data_1TG8 # _model_server_result.job_id HNmJ3tOCmxsUksEnpwcBYw _model_server_result.datetime_utc '2024-12-26 21:02:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 1TG8 # _exptl.entry_id 1TG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TG8 _cell.length_a 71.919 _cell.length_b 71.919 _cell.length_c 140.856 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? disulf ? disulf2 A SG CYS 74 A CYS 74 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 92 A CYS 92 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 185 A CYS 185 1_555 A SG CYS 285 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf5 A SG CYS 302 A CYS 302 1_555 A SG CYS 333 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 237 n n C1 O5 NDG sing 238 n n C1 O1 NDG sing 239 n n C1 H1 NDG sing 240 n n C2 C3 NDG sing 241 n n C2 N2 NDG sing 242 n n C2 H2 NDG sing 243 n n C3 C4 NDG sing 244 n n C3 O3 NDG sing 245 n n C3 H3 NDG sing 246 n n C4 C5 NDG sing 247 n n C4 O4 NDG sing 248 n n C4 H4 NDG sing 249 n n C5 C6 NDG sing 250 n n C5 O5 NDG sing 251 n n C5 H5 NDG sing 252 n n C6 O6 NDG sing 253 n n C6 H61 NDG sing 254 n n C6 H62 NDG sing 255 n n C7 C8 NDG sing 256 n n C7 O7 NDG doub 257 n n C7 N2 NDG sing 258 n n C8 H81 NDG sing 259 n n C8 H82 NDG sing 260 n n C8 H83 NDG sing 261 n n O3 HO3 NDG sing 262 n n O4 HO4 NDG sing 263 n n O6 HO6 NDG sing 264 n n N2 HN2 NDG sing 265 n n O1 HO1 NDG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1TG8 _atom_sites.fract_transf_matrix[1][1] 0.013905 _atom_sites.fract_transf_matrix[1][2] 0.008028 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDG A 1 401 401 NDG NAG . C 2 NDG A 1 402 402 NDG NAG . D 3 HOH A 1 403 1 HOH HOH . D 3 HOH A 2 404 2 HOH HOH . D 3 HOH A 3 405 3 HOH HOH . D 3 HOH A 4 406 4 HOH HOH . D 3 HOH A 5 407 6 HOH HOH . D 3 HOH A 6 408 7 HOH HOH . D 3 HOH A 7 409 8 HOH HOH . D 3 HOH A 8 410 9 HOH HOH . D 3 HOH A 9 411 10 HOH HOH . D 3 HOH A 10 412 11 HOH HOH . D 3 HOH A 11 413 13 HOH HOH . D 3 HOH A 12 414 14 HOH HOH . D 3 HOH A 13 415 15 HOH HOH . D 3 HOH A 14 416 17 HOH HOH . D 3 HOH A 15 417 19 HOH HOH . D 3 HOH A 16 418 20 HOH HOH . D 3 HOH A 17 419 21 HOH HOH . D 3 HOH A 18 420 22 HOH HOH . D 3 HOH A 19 421 24 HOH HOH . D 3 HOH A 20 422 25 HOH HOH . D 3 HOH A 21 423 26 HOH HOH . D 3 HOH A 22 424 27 HOH HOH . D 3 HOH A 23 425 30 HOH HOH . D 3 HOH A 24 426 31 HOH HOH . D 3 HOH A 25 427 32 HOH HOH . D 3 HOH A 26 428 33 HOH HOH . D 3 HOH A 27 429 34 HOH HOH . D 3 HOH A 28 430 36 HOH HOH . D 3 HOH A 29 431 38 HOH HOH . D 3 HOH A 30 432 39 HOH HOH . D 3 HOH A 31 433 40 HOH HOH . D 3 HOH A 32 434 41 HOH HOH . D 3 HOH A 33 435 42 HOH HOH . D 3 HOH A 34 436 43 HOH HOH . D 3 HOH A 35 437 44 HOH HOH . D 3 HOH A 36 438 46 HOH HOH . D 3 HOH A 37 439 47 HOH HOH . D 3 HOH A 38 440 48 HOH HOH . D 3 HOH A 39 441 52 HOH HOH . D 3 HOH A 40 442 53 HOH HOH . D 3 HOH A 41 443 54 HOH HOH . D 3 HOH A 42 444 55 HOH HOH . D 3 HOH A 43 445 56 HOH HOH . D 3 HOH A 44 446 60 HOH HOH . D 3 HOH A 45 447 61 HOH HOH . D 3 HOH A 46 448 62 HOH HOH . D 3 HOH A 47 449 63 HOH HOH . D 3 HOH A 48 450 64 HOH HOH . D 3 HOH A 49 451 65 HOH HOH . D 3 HOH A 50 452 67 HOH HOH . D 3 HOH A 51 453 68 HOH HOH . D 3 HOH A 52 454 70 HOH HOH . D 3 HOH A 53 455 73 HOH HOH . D 3 HOH A 54 456 74 HOH HOH . D 3 HOH A 55 457 75 HOH HOH . D 3 HOH A 56 458 77 HOH HOH . D 3 HOH A 57 459 78 HOH HOH . D 3 HOH A 58 460 79 HOH HOH . D 3 HOH A 59 461 80 HOH HOH . D 3 HOH A 60 462 83 HOH HOH . D 3 HOH A 61 463 85 HOH HOH . D 3 HOH A 62 464 86 HOH HOH . D 3 HOH A 63 465 87 HOH HOH . D 3 HOH A 64 466 89 HOH HOH . D 3 HOH A 65 467 90 HOH HOH . D 3 HOH A 66 468 91 HOH HOH . D 3 HOH A 67 469 92 HOH HOH . D 3 HOH A 68 470 94 HOH HOH . D 3 HOH A 69 471 95 HOH HOH . D 3 HOH A 70 472 96 HOH HOH . D 3 HOH A 71 473 98 HOH HOH . D 3 HOH A 72 474 99 HOH HOH . D 3 HOH A 73 475 100 HOH HOH . D 3 HOH A 74 476 102 HOH HOH . D 3 HOH A 75 477 103 HOH HOH . D 3 HOH A 76 478 105 HOH HOH . D 3 HOH A 77 479 109 HOH HOH . D 3 HOH A 78 480 110 HOH HOH . D 3 HOH A 79 481 113 HOH HOH . D 3 HOH A 80 482 114 HOH HOH . D 3 HOH A 81 483 115 HOH HOH . D 3 HOH A 82 484 116 HOH HOH . D 3 HOH A 83 485 117 HOH HOH . D 3 HOH A 84 486 119 HOH HOH . D 3 HOH A 85 487 121 HOH HOH . D 3 HOH A 86 488 122 HOH HOH . D 3 HOH A 87 489 124 HOH HOH . D 3 HOH A 88 490 125 HOH HOH . D 3 HOH A 89 491 126 HOH HOH . D 3 HOH A 90 492 129 HOH HOH . D 3 HOH A 91 493 130 HOH HOH . D 3 HOH A 92 494 131 HOH HOH . D 3 HOH A 93 495 133 HOH HOH . D 3 HOH A 94 496 134 HOH HOH . D 3 HOH A 95 497 136 HOH HOH . D 3 HOH A 96 498 137 HOH HOH . D 3 HOH A 97 499 138 HOH HOH . D 3 HOH A 98 500 139 HOH HOH . D 3 HOH A 99 501 147 HOH HOH . D 3 HOH A 100 502 150 HOH HOH . D 3 HOH A 101 503 152 HOH HOH . D 3 HOH A 102 504 155 HOH HOH . D 3 HOH A 103 505 158 HOH HOH . D 3 HOH A 104 506 160 HOH HOH . D 3 HOH A 105 507 161 HOH HOH . D 3 HOH A 106 508 162 HOH HOH . D 3 HOH A 107 509 163 HOH HOH . D 3 HOH A 108 510 165 HOH HOH . D 3 HOH A 109 511 166 HOH HOH . D 3 HOH A 110 512 167 HOH HOH . D 3 HOH A 111 513 169 HOH HOH . D 3 HOH A 112 514 172 HOH HOH . D 3 HOH A 113 515 175 HOH HOH . D 3 HOH A 114 516 176 HOH HOH . D 3 HOH A 115 517 178 HOH HOH . D 3 HOH A 116 518 180 HOH HOH . D 3 HOH A 117 519 182 HOH HOH . D 3 HOH A 118 520 183 HOH HOH . D 3 HOH A 119 521 184 HOH HOH . D 3 HOH A 120 522 185 HOH HOH . D 3 HOH A 121 523 186 HOH HOH . D 3 HOH A 122 524 188 HOH HOH . D 3 HOH A 123 525 189 HOH HOH . D 3 HOH A 124 526 190 HOH HOH . D 3 HOH A 125 527 191 HOH HOH . D 3 HOH A 126 528 192 HOH HOH . D 3 HOH A 127 529 194 HOH HOH . D 3 HOH A 128 530 197 HOH HOH . D 3 HOH A 129 531 198 HOH HOH . D 3 HOH A 130 532 200 HOH HOH . D 3 HOH A 131 533 203 HOH HOH . D 3 HOH A 132 534 207 HOH HOH . D 3 HOH A 133 535 210 HOH HOH . D 3 HOH A 134 536 211 HOH HOH . D 3 HOH A 135 537 212 HOH HOH . D 3 HOH A 136 538 213 HOH HOH . D 3 HOH A 137 539 214 HOH HOH . D 3 HOH A 138 540 215 HOH HOH . D 3 HOH A 139 541 217 HOH HOH . D 3 HOH A 140 542 220 HOH HOH . D 3 HOH A 141 543 222 HOH HOH . D 3 HOH A 142 544 223 HOH HOH . D 3 HOH A 143 545 225 HOH HOH . D 3 HOH A 144 546 226 HOH HOH . D 3 HOH A 145 547 227 HOH HOH . D 3 HOH A 146 548 232 HOH HOH . D 3 HOH A 147 549 233 HOH HOH . D 3 HOH A 148 550 238 HOH HOH . D 3 HOH A 149 551 239 HOH HOH . D 3 HOH A 150 552 240 HOH HOH . D 3 HOH A 151 553 242 HOH HOH . D 3 HOH A 152 554 244 HOH HOH . D 3 HOH A 153 555 245 HOH HOH . D 3 HOH A 154 556 246 HOH HOH . D 3 HOH A 155 557 248 HOH HOH . D 3 HOH A 156 558 249 HOH HOH . D 3 HOH A 157 559 250 HOH HOH . D 3 HOH A 158 560 251 HOH HOH . D 3 HOH A 159 561 252 HOH HOH . D 3 HOH A 160 562 253 HOH HOH . D 3 HOH A 161 563 255 HOH HOH . D 3 HOH A 162 564 257 HOH HOH . D 3 HOH A 163 565 260 HOH HOH . D 3 HOH A 164 566 264 HOH HOH . D 3 HOH A 165 567 267 HOH HOH . D 3 HOH A 166 568 269 HOH HOH . D 3 HOH A 167 569 270 HOH HOH . D 3 HOH A 168 570 273 HOH HOH . D 3 HOH A 169 571 274 HOH HOH . D 3 HOH A 170 572 275 HOH HOH . D 3 HOH A 171 573 276 HOH HOH . D 3 HOH A 172 574 277 HOH HOH . D 3 HOH A 173 575 279 HOH HOH . D 3 HOH A 174 576 280 HOH HOH . D 3 HOH A 175 577 281 HOH HOH . D 3 HOH A 176 578 282 HOH HOH . D 3 HOH A 177 579 284 HOH HOH . D 3 HOH A 178 580 285 HOH HOH . D 3 HOH A 179 581 287 HOH HOH . D 3 HOH A 180 582 289 HOH HOH . D 3 HOH A 181 583 293 HOH HOH . D 3 HOH A 182 584 294 HOH HOH . D 3 HOH A 183 585 297 HOH HOH . D 3 HOH A 184 586 298 HOH HOH . D 3 HOH A 185 587 300 HOH HOH . D 3 HOH A 186 588 301 HOH HOH . D 3 HOH A 187 589 307 HOH HOH . D 3 HOH A 188 590 308 HOH HOH . D 3 HOH A 189 591 313 HOH HOH . D 3 HOH A 190 592 317 HOH HOH . D 3 HOH A 191 593 319 HOH HOH . D 3 HOH A 192 594 320 HOH HOH . D 3 HOH A 193 595 321 HOH HOH . D 3 HOH A 194 596 323 HOH HOH . D 3 HOH A 195 597 324 HOH HOH . D 3 HOH A 196 598 327 HOH HOH . D 3 HOH A 197 599 330 HOH HOH . D 3 HOH A 198 600 333 HOH HOH . D 3 HOH A 199 601 336 HOH HOH . D 3 HOH A 200 602 337 HOH HOH . D 3 HOH A 201 603 347 HOH HOH . D 3 HOH A 202 604 349 HOH HOH . D 3 HOH A 203 605 350 HOH HOH . D 3 HOH A 204 606 352 HOH HOH . D 3 HOH A 205 607 355 HOH HOH . D 3 HOH A 206 608 357 HOH HOH . D 3 HOH A 207 609 358 HOH HOH . D 3 HOH A 208 610 359 HOH HOH . D 3 HOH A 209 611 361 HOH HOH . D 3 HOH A 210 612 362 HOH HOH . D 3 HOH A 211 613 363 HOH HOH . D 3 HOH A 212 614 365 HOH HOH . D 3 HOH A 213 615 369 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . C 2 9.608 5.003 40.739 1 78.5 ? C1 NDG 402 A 1 HETATM 2 C C2 NDG . . . C 2 10.47 3.877 41.239 1 77.15 ? C2 NDG 402 A 1 HETATM 3 C C3 NDG . . . C 2 9.762 2.566 40.901 1 78.3 ? C3 NDG 402 A 1 HETATM 4 C C4 NDG . . . C 2 8.272 2.57 41.367 1 79.85 ? C4 NDG 402 A 1 HETATM 5 C C5 NDG . . . C 2 7.531 3.921 41.171 1 79.21 ? C5 NDG 402 A 1 HETATM 6 C C6 NDG . . . C 2 6.286 4.059 42.043 1 78.62 ? C6 NDG 402 A 1 HETATM 7 C C7 NDG . . . C 2 12.616 4.937 40.965 1 76.37 ? C7 NDG 402 A 1 HETATM 8 C C8 NDG . . . C 2 12.846 6.044 39.946 1 78.79 ? C8 NDG 402 A 1 HETATM 9 O O5 NDG . . . C 2 8.382 5.038 41.476 1 79.04 ? O5 NDG 402 A 1 HETATM 10 O O3 NDG . . . C 2 10.453 1.492 41.526 1 75.78 ? O3 NDG 402 A 1 HETATM 11 O O4 NDG . . . C 2 7.561 1.578 40.636 1 81.87 ? O4 NDG 402 A 1 HETATM 12 O O6 NDG . . . C 2 6.551 4.771 43.243 1 79.03 ? O6 NDG 402 A 1 HETATM 13 O O7 NDG . . . C 2 13.189 4.982 42.055 1 73.45 ? O7 NDG 402 A 1 HETATM 14 N N2 NDG . . . C 2 11.784 3.954 40.627 1 76.25 ? N2 NDG 402 A 1 HETATM 15 O O1 NDG . . . C 2 9.321 4.837 39.393 1 84.13 ? O1 NDG 402 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #