data_1TGJ # _model_server_result.job_id lGrA_MHpJjINtypMQNf9WA _model_server_result.datetime_utc '2024-12-23 06:59:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tgj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":113}' # _entry.id 1TGJ # _exptl.entry_id 1TGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TGJ _cell.length_a 49.3 _cell.length_b 49.3 _cell.length_c 78.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 85.390105 26.3 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 16 A CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 78 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 A SG CYS 44 A CYS 44 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 48 A CYS 48 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 77 A CYS 77 1_555 A SG CYS 77 A CYS 77 5_675 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 1TGJ _atom_sites.fract_transf_matrix[1][1] 0.020284 _atom_sites.fract_transf_matrix[1][2] 0.011711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DIO A 1 113 113 DIO DIO . C 3 HOH A 1 114 114 HOH HOH . C 3 HOH A 2 115 115 HOH HOH . C 3 HOH A 3 116 116 HOH HOH . C 3 HOH A 4 117 117 HOH HOH . C 3 HOH A 5 118 118 HOH HOH . C 3 HOH A 6 119 119 HOH HOH . C 3 HOH A 7 120 120 HOH HOH . C 3 HOH A 8 121 121 HOH HOH . C 3 HOH A 9 122 122 HOH HOH . C 3 HOH A 10 123 123 HOH HOH . C 3 HOH A 11 124 124 HOH HOH . C 3 HOH A 12 125 125 HOH HOH . C 3 HOH A 13 126 126 HOH HOH . C 3 HOH A 14 127 127 HOH HOH . C 3 HOH A 15 128 128 HOH HOH . C 3 HOH A 16 129 129 HOH HOH . C 3 HOH A 17 130 130 HOH HOH . C 3 HOH A 18 131 131 HOH HOH . C 3 HOH A 19 132 132 HOH HOH . C 3 HOH A 20 133 133 HOH HOH . C 3 HOH A 21 134 134 HOH HOH . C 3 HOH A 22 135 135 HOH HOH . C 3 HOH A 23 136 136 HOH HOH . C 3 HOH A 24 137 137 HOH HOH . C 3 HOH A 25 138 138 HOH HOH . C 3 HOH A 26 139 139 HOH HOH . C 3 HOH A 27 140 140 HOH HOH . C 3 HOH A 28 141 141 HOH HOH . C 3 HOH A 29 142 142 HOH HOH . C 3 HOH A 30 143 143 HOH HOH . C 3 HOH A 31 144 144 HOH HOH . C 3 HOH A 32 145 145 HOH HOH . C 3 HOH A 33 146 146 HOH HOH . C 3 HOH A 34 147 147 HOH HOH . C 3 HOH A 35 148 148 HOH HOH . C 3 HOH A 36 149 149 HOH HOH . C 3 HOH A 37 150 150 HOH HOH . C 3 HOH A 38 151 151 HOH HOH . C 3 HOH A 39 152 152 HOH HOH . C 3 HOH A 40 153 153 HOH HOH . C 3 HOH A 41 154 154 HOH HOH . C 3 HOH A 42 155 155 HOH HOH . C 3 HOH A 43 156 156 HOH HOH . C 3 HOH A 44 157 157 HOH HOH . C 3 HOH A 45 158 158 HOH HOH . C 3 HOH A 46 159 159 HOH HOH . C 3 HOH A 47 160 160 HOH HOH . C 3 HOH A 48 161 161 HOH HOH . C 3 HOH A 49 162 162 HOH HOH . C 3 HOH A 50 163 163 HOH HOH . C 3 HOH A 51 164 164 HOH HOH . C 3 HOH A 52 165 165 HOH HOH . C 3 HOH A 53 166 166 HOH HOH . C 3 HOH A 54 167 167 HOH HOH . C 3 HOH A 55 168 168 HOH HOH . C 3 HOH A 56 169 169 HOH HOH . C 3 HOH A 57 170 170 HOH HOH . C 3 HOH A 58 171 171 HOH HOH . C 3 HOH A 59 172 172 HOH HOH . C 3 HOH A 60 173 173 HOH HOH . C 3 HOH A 61 174 174 HOH HOH . C 3 HOH A 62 175 175 HOH HOH . C 3 HOH A 63 176 176 HOH HOH . C 3 HOH A 64 177 177 HOH HOH . C 3 HOH A 65 178 178 HOH HOH . C 3 HOH A 66 179 179 HOH HOH . C 3 HOH A 67 180 180 HOH HOH . C 3 HOH A 68 181 181 HOH HOH . C 3 HOH A 69 182 182 HOH HOH . C 3 HOH A 70 183 183 HOH HOH . C 3 HOH A 71 184 184 HOH HOH . C 3 HOH A 72 185 185 HOH HOH . C 3 HOH A 73 186 186 HOH HOH . C 3 HOH A 74 187 187 HOH HOH . C 3 HOH A 75 188 188 HOH HOH . C 3 HOH A 76 189 189 HOH HOH . C 3 HOH A 77 190 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . B 2 -20.179 21.298 22.796 1 41.37 ? C1 DIO 113 A 1 HETATM 2 C C2 DIO . . . B 2 -21.591 19.785 23.863 1 41 ? C2 DIO 113 A 1 HETATM 3 C C1' DIO . . . B 2 -20.869 22.42 23.481 1 42.65 ? C1' DIO 113 A 1 HETATM 4 C C2' DIO . . . B 2 -22.467 20.923 24.347 1 39.56 ? C2' DIO 113 A 1 HETATM 5 O O1 DIO . . . B 2 -20.231 20.268 23.78 1 42.8 ? O1 DIO 113 A 1 HETATM 6 O O1' DIO . . . B 2 -22.263 22.047 23.471 1 41.54 ? O1' DIO 113 A 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #