data_1TI8
#
_model_server_result.job_id            mnCE-zaV32ZdEacJmDq8FA 
_model_server_result.datetime_utc      '2024-11-29 13:00:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ti8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":340}' 
#
_entry.id    1TI8 
#
_exptl.entry_id    1TI8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1TI8 
_cell.length_a            118.2 
_cell.length_b            118.2 
_cell.length_c            298.7 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 118.2 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 59.1 102.364203 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 40 A CYS 52 1_555 A SG CYS 266 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 52 A CYS 64 1_555 A SG CYS 64 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 A SG CYS 85 A CYS 97 1_555 A SG CYS 127 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 A SG CYS 270 A CYS 281 1_555 A SG CYS 294 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NDG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDG sing 291 n n 
C1 O5 NDG sing 292 n n 
C1 O1 NDG sing 293 n n 
C1 H1 NDG sing 294 n n 
C2 C3 NDG sing 295 n n 
C2 N2 NDG sing 296 n n 
C2 H2 NDG sing 297 n n 
C3 C4 NDG sing 298 n n 
C3 O3 NDG sing 299 n n 
C3 H3 NDG sing 300 n n 
C4 C5 NDG sing 301 n n 
C4 O4 NDG sing 302 n n 
C4 H4 NDG sing 303 n n 
C5 C6 NDG sing 304 n n 
C5 O5 NDG sing 305 n n 
C5 H5 NDG sing 306 n n 
C6 O6 NDG sing 307 n n 
C6 H61 NDG sing 308 n n 
C6 H62 NDG sing 309 n n 
C7 C8 NDG sing 310 n n 
C7 O7 NDG doub 311 n n 
C7 N2 NDG sing 312 n n 
C8 H81 NDG sing 313 n n 
C8 H82 NDG sing 314 n n 
C8 H83 NDG sing 315 n n 
O3 HO3 NDG sing 316 n n 
O4 HO4 NDG sing 317 n n 
O6 HO6 NDG sing 318 n n 
N2 HN2 NDG sing 319 n n 
O1 HO1 NDG sing 320 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 
NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1TI8 
_atom_sites.fract_transf_matrix[1][1]    0.00846 
_atom_sites.fract_transf_matrix[1][2]    0.004885 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NDG A 1 340 340 NDG NAG . 
D 4 MAN A 1 341 341 MAN MAN . 
E 4 MAN A 1 342 342 MAN MAN . 
F 4 MAN A 1 343 343 MAN MAN . 
G 4 MAN A 1 344 344 MAN MAN . 
H 4 MAN A 1 345 345 MAN MAN . 
I 5 NAG A 1 349 349 NAG NAG . 
J 5 NAG B 1 339 339 NAG NAG . 
K 6 HOH A 1 350 2 HOH TIP . 
K 6 HOH A 2 351 6 HOH TIP . 
K 6 HOH A 3 352 9 HOH TIP . 
K 6 HOH A 4 353 10 HOH TIP . 
K 6 HOH A 5 354 11 HOH TIP . 
K 6 HOH A 6 355 12 HOH TIP . 
K 6 HOH A 7 356 13 HOH TIP . 
K 6 HOH A 8 357 15 HOH TIP . 
K 6 HOH A 9 358 17 HOH TIP . 
K 6 HOH A 10 359 19 HOH TIP . 
K 6 HOH A 11 360 20 HOH TIP . 
K 6 HOH A 12 361 21 HOH TIP . 
K 6 HOH A 13 362 24 HOH TIP . 
K 6 HOH A 14 363 25 HOH TIP . 
K 6 HOH A 15 364 26 HOH TIP . 
K 6 HOH A 16 365 27 HOH TIP . 
K 6 HOH A 17 366 28 HOH TIP . 
K 6 HOH A 18 367 29 HOH TIP . 
K 6 HOH A 19 368 31 HOH TIP . 
K 6 HOH A 20 369 32 HOH TIP . 
K 6 HOH A 21 370 33 HOH TIP . 
K 6 HOH A 22 371 34 HOH TIP . 
K 6 HOH A 23 372 36 HOH TIP . 
K 6 HOH A 24 373 37 HOH TIP . 
K 6 HOH A 25 374 38 HOH TIP . 
K 6 HOH A 26 375 39 HOH TIP . 
K 6 HOH A 27 376 40 HOH TIP . 
K 6 HOH A 28 377 42 HOH TIP . 
K 6 HOH A 29 378 43 HOH TIP . 
K 6 HOH A 30 379 44 HOH TIP . 
K 6 HOH A 31 380 45 HOH TIP . 
K 6 HOH A 32 381 46 HOH TIP . 
K 6 HOH A 33 382 47 HOH TIP . 
K 6 HOH A 34 383 48 HOH TIP . 
K 6 HOH A 35 384 49 HOH TIP . 
K 6 HOH A 36 385 50 HOH TIP . 
K 6 HOH A 37 386 51 HOH TIP . 
K 6 HOH A 38 387 52 HOH TIP . 
K 6 HOH A 39 388 53 HOH TIP . 
K 6 HOH A 40 389 54 HOH TIP . 
K 6 HOH A 41 390 57 HOH TIP . 
K 6 HOH A 42 391 59 HOH TIP . 
K 6 HOH A 43 392 61 HOH TIP . 
K 6 HOH A 44 393 62 HOH TIP . 
K 6 HOH A 45 394 63 HOH TIP . 
K 6 HOH A 46 395 64 HOH TIP . 
K 6 HOH A 47 396 65 HOH TIP . 
K 6 HOH A 48 397 66 HOH TIP . 
K 6 HOH A 49 398 69 HOH TIP . 
K 6 HOH A 50 399 71 HOH TIP . 
K 6 HOH A 51 400 72 HOH TIP . 
K 6 HOH A 52 401 75 HOH TIP . 
K 6 HOH A 53 402 78 HOH TIP . 
K 6 HOH A 54 403 79 HOH TIP . 
K 6 HOH A 55 404 80 HOH TIP . 
K 6 HOH A 56 405 81 HOH TIP . 
K 6 HOH A 57 406 82 HOH TIP . 
K 6 HOH A 58 407 83 HOH TIP . 
K 6 HOH A 59 408 84 HOH TIP . 
K 6 HOH A 60 409 86 HOH TIP . 
K 6 HOH A 61 410 87 HOH TIP . 
K 6 HOH A 62 411 89 HOH TIP . 
K 6 HOH A 63 412 90 HOH TIP . 
K 6 HOH A 64 413 91 HOH TIP . 
K 6 HOH A 65 414 92 HOH TIP . 
K 6 HOH A 66 415 93 HOH TIP . 
K 6 HOH A 67 416 94 HOH TIP . 
K 6 HOH A 68 417 95 HOH TIP . 
K 6 HOH A 69 418 96 HOH TIP . 
K 6 HOH A 70 419 97 HOH TIP . 
K 6 HOH A 71 420 98 HOH TIP . 
K 6 HOH A 72 421 99 HOH TIP . 
K 6 HOH A 73 422 100 HOH TIP . 
K 6 HOH A 74 423 102 HOH TIP . 
K 6 HOH A 75 424 103 HOH TIP . 
K 6 HOH A 76 425 104 HOH TIP . 
K 6 HOH A 77 426 105 HOH TIP . 
K 6 HOH A 78 427 106 HOH TIP . 
K 6 HOH A 79 428 107 HOH TIP . 
K 6 HOH A 80 429 108 HOH TIP . 
K 6 HOH A 81 430 109 HOH TIP . 
K 6 HOH A 82 431 110 HOH TIP . 
K 6 HOH A 83 432 111 HOH TIP . 
K 6 HOH A 84 433 112 HOH TIP . 
K 6 HOH A 85 434 113 HOH TIP . 
K 6 HOH A 86 435 116 HOH TIP . 
K 6 HOH A 87 436 117 HOH TIP . 
K 6 HOH A 88 437 118 HOH TIP . 
K 6 HOH A 89 438 120 HOH TIP . 
K 6 HOH A 90 439 122 HOH TIP . 
K 6 HOH A 91 440 123 HOH TIP . 
K 6 HOH A 92 441 124 HOH TIP . 
K 6 HOH A 93 442 126 HOH TIP . 
K 6 HOH A 94 443 127 HOH TIP . 
L 6 HOH B 1 340 1 HOH TIP . 
L 6 HOH B 2 341 3 HOH TIP . 
L 6 HOH B 3 342 4 HOH TIP . 
L 6 HOH B 4 343 5 HOH TIP . 
L 6 HOH B 5 344 7 HOH TIP . 
L 6 HOH B 6 345 8 HOH TIP . 
L 6 HOH B 7 346 14 HOH TIP . 
L 6 HOH B 8 347 16 HOH TIP . 
L 6 HOH B 9 348 18 HOH TIP . 
L 6 HOH B 10 349 22 HOH TIP . 
L 6 HOH B 11 350 23 HOH TIP . 
L 6 HOH B 12 351 30 HOH TIP . 
L 6 HOH B 13 352 35 HOH TIP . 
L 6 HOH B 14 353 41 HOH TIP . 
L 6 HOH B 15 354 55 HOH TIP . 
L 6 HOH B 16 355 56 HOH TIP . 
L 6 HOH B 17 356 58 HOH TIP . 
L 6 HOH B 18 357 60 HOH TIP . 
L 6 HOH B 19 358 67 HOH TIP . 
L 6 HOH B 20 359 68 HOH TIP . 
L 6 HOH B 21 360 70 HOH TIP . 
L 6 HOH B 22 361 76 HOH TIP . 
L 6 HOH B 23 362 77 HOH TIP . 
L 6 HOH B 24 363 85 HOH TIP . 
L 6 HOH B 25 364 88 HOH TIP . 
L 6 HOH B 26 365 101 HOH TIP . 
L 6 HOH B 27 366 114 HOH TIP . 
L 6 HOH B 28 367 115 HOH TIP . 
L 6 HOH B 29 368 119 HOH TIP . 
L 6 HOH B 30 369 121 HOH TIP . 
L 6 HOH B 31 370 125 HOH TIP . 
L 6 HOH B 32 371 128 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDG . . . C 3 58.645 52.156 -0.656 1 68.6 ? C1 NDG 340 A 1 
HETATM 2 C C2 NDG . . . C 3 59.902 52.967 -0.856 1 68.53 ? C2 NDG 340 A 1 
HETATM 3 C C3 NDG . . . C 3 59.506 54.4 -1.204 1 68.36 ? C3 NDG 340 A 1 
HETATM 4 C C4 NDG . . . C 3 58.363 54.502 -2.25 1 67.58 ? C4 NDG 340 A 1 
HETATM 5 C C5 NDG . . . C 3 57.316 53.383 -2.189 1 66.87 ? C5 NDG 340 A 1 
HETATM 6 C C6 NDG . . . C 3 56.618 53.223 -3.521 1 65.73 ? C6 NDG 340 A 1 
HETATM 7 C C7 NDG . . . C 3 61.259 51.81 0.781 1 68.97 ? C7 NDG 340 A 1 
HETATM 8 C C8 NDG . . . C 3 60.646 51.177 2.02 1 69.1 ? C8 NDG 340 A 1 
HETATM 9 O O5 NDG . . . C 3 57.925 52.12 -1.885 1 67.52 ? O5 NDG 340 A 1 
HETATM 10 O O3 NDG . . . C 3 60.649 55.082 -1.698 1 69.27 ? O3 NDG 340 A 1 
HETATM 11 O O4 NDG . . . C 3 57.676 55.725 -2.046 1 67.15 ? O4 NDG 340 A 1 
HETATM 12 O O6 NDG . . . C 3 57.564 53.126 -4.575 1 65.08 ? O6 NDG 340 A 1 
HETATM 13 O O7 NDG . . . C 3 62.219 51.271 0.226 1 68.02 ? O7 NDG 340 A 1 
HETATM 14 N N2 NDG . . . C 3 60.715 52.946 0.349 1 68.81 ? N2 NDG 340 A 1 
HETATM 15 O O1 NDG . . . C 3 57.836 52.751 0.301 1 70.95 ? O1 NDG 340 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#