data_1TIL # _model_server_result.job_id lglw-B6Q8tBkl8BqFvt0ag _model_server_result.datetime_utc '2025-04-08 01:43:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1til # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 1TIL # _exptl.entry_id 1TIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TIL _cell.length_a 115.133 _cell.length_b 115.133 _cell.length_c 256.82 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,G,H,I,J,M,N,O,P 1 1 E,F,K,L,Q,R 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x,-y,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 0 128.41 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 50 A ASN 50 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 A ND2 ASN 50 A ASN 50 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc3 H O1A ATP . A ATP 200 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc4 H O2G ATP . A ATP 200 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 H O1B ATP . A ATP 200 1_555 G MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc6 C OD1 ASN 50 C ASN 50 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 J O2G ATP . C ATP 201 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc8 J O1A ATP . C ATP 201 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc9 J O1B ATP . C ATP 201 1_555 I MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc10 E OD1 ASN 50 E ASN 50 1_555 K MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc11 L O1B ATP . E ATP 202 1_555 K MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc12 L O1A ATP . E ATP 202 1_555 K MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc13 L O2G ATP . E ATP 202 1_555 K MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1TIL _atom_sites.fract_transf_matrix[1][1] 0.008686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 MG A 1 300 300 MG MG2 . H 4 ATP A 1 200 200 ATP ATP . I 3 MG C 1 301 300 MG MG2 . J 4 ATP C 1 201 200 ATP ATP . K 3 MG E 1 302 300 MG MG2 . L 4 ATP E 1 202 200 ATP ATP . M 5 HOH A 1 301 4 HOH TIP . M 5 HOH A 2 302 9 HOH TIP . M 5 HOH A 3 303 14 HOH TIP . M 5 HOH A 4 304 16 HOH TIP . M 5 HOH A 5 305 17 HOH TIP . M 5 HOH A 6 306 18 HOH TIP . M 5 HOH A 7 307 21 HOH TIP . M 5 HOH A 8 308 25 HOH TIP . M 5 HOH A 9 309 30 HOH TIP . M 5 HOH A 10 310 36 HOH TIP . M 5 HOH A 11 311 37 HOH TIP . M 5 HOH A 12 312 38 HOH TIP . M 5 HOH A 13 313 41 HOH TIP . M 5 HOH A 14 314 43 HOH TIP . M 5 HOH A 15 315 47 HOH TIP . M 5 HOH A 16 316 51 HOH TIP . M 5 HOH A 17 317 55 HOH TIP . M 5 HOH A 18 318 57 HOH TIP . M 5 HOH A 19 319 58 HOH TIP . M 5 HOH A 20 320 59 HOH TIP . M 5 HOH A 21 321 64 HOH TIP . M 5 HOH A 22 322 66 HOH TIP . M 5 HOH A 23 323 67 HOH TIP . M 5 HOH A 24 324 69 HOH TIP . M 5 HOH A 25 325 70 HOH TIP . M 5 HOH A 26 326 74 HOH TIP . M 5 HOH A 27 327 76 HOH TIP . M 5 HOH A 28 328 78 HOH TIP . M 5 HOH A 29 329 84 HOH TIP . M 5 HOH A 30 330 89 HOH TIP . M 5 HOH A 31 331 91 HOH TIP . M 5 HOH A 32 332 92 HOH TIP . M 5 HOH A 33 333 97 HOH TIP . M 5 HOH A 34 334 98 HOH TIP . M 5 HOH A 35 335 105 HOH TIP . M 5 HOH A 36 336 111 HOH TIP . M 5 HOH A 37 337 116 HOH TIP . M 5 HOH A 38 338 129 HOH TIP . M 5 HOH A 39 339 131 HOH TIP . M 5 HOH A 40 340 137 HOH TIP . M 5 HOH A 41 341 152 HOH TIP . M 5 HOH A 42 342 155 HOH TIP . N 5 HOH B 1 117 6 HOH TIP . N 5 HOH B 2 118 8 HOH TIP . N 5 HOH B 3 119 32 HOH TIP . N 5 HOH B 4 120 40 HOH TIP . N 5 HOH B 5 121 46 HOH TIP . N 5 HOH B 6 122 86 HOH TIP . N 5 HOH B 7 123 96 HOH TIP . N 5 HOH B 8 124 99 HOH TIP . N 5 HOH B 9 125 108 HOH TIP . N 5 HOH B 10 126 117 HOH TIP . N 5 HOH B 11 127 123 HOH TIP . N 5 HOH B 12 128 134 HOH TIP . N 5 HOH B 13 129 135 HOH TIP . N 5 HOH B 14 130 144 HOH TIP . N 5 HOH B 15 131 148 HOH TIP . N 5 HOH B 16 132 149 HOH TIP . N 5 HOH B 17 133 151 HOH TIP . N 5 HOH B 18 134 154 HOH TIP . O 5 HOH C 1 302 1 HOH TIP . O 5 HOH C 2 303 7 HOH TIP . O 5 HOH C 3 304 19 HOH TIP . O 5 HOH C 4 305 20 HOH TIP . O 5 HOH C 5 306 22 HOH TIP . O 5 HOH C 6 307 23 HOH TIP . O 5 HOH C 7 308 28 HOH TIP . O 5 HOH C 8 309 48 HOH TIP . O 5 HOH C 9 310 50 HOH TIP . O 5 HOH C 10 311 53 HOH TIP . O 5 HOH C 11 312 54 HOH TIP . O 5 HOH C 12 313 56 HOH TIP . O 5 HOH C 13 314 60 HOH TIP . O 5 HOH C 14 315 62 HOH TIP . O 5 HOH C 15 316 71 HOH TIP . O 5 HOH C 16 317 72 HOH TIP . O 5 HOH C 17 318 73 HOH TIP . O 5 HOH C 18 319 77 HOH TIP . O 5 HOH C 19 320 81 HOH TIP . O 5 HOH C 20 321 82 HOH TIP . O 5 HOH C 21 322 85 HOH TIP . O 5 HOH C 22 323 88 HOH TIP . O 5 HOH C 23 324 90 HOH TIP . O 5 HOH C 24 325 95 HOH TIP . O 5 HOH C 25 326 100 HOH TIP . O 5 HOH C 26 327 102 HOH TIP . O 5 HOH C 27 328 103 HOH TIP . O 5 HOH C 28 329 107 HOH TIP . O 5 HOH C 29 330 121 HOH TIP . O 5 HOH C 30 331 125 HOH TIP . O 5 HOH C 31 332 126 HOH TIP . O 5 HOH C 32 333 138 HOH TIP . O 5 HOH C 33 334 140 HOH TIP . O 5 HOH C 34 335 141 HOH TIP . O 5 HOH C 35 336 143 HOH TIP . P 5 HOH D 1 117 2 HOH TIP . P 5 HOH D 2 118 5 HOH TIP . P 5 HOH D 3 119 10 HOH TIP . P 5 HOH D 4 120 15 HOH TIP . P 5 HOH D 5 121 27 HOH TIP . P 5 HOH D 6 122 44 HOH TIP . P 5 HOH D 7 123 49 HOH TIP . P 5 HOH D 8 124 63 HOH TIP . P 5 HOH D 9 125 75 HOH TIP . P 5 HOH D 10 126 101 HOH TIP . P 5 HOH D 11 127 106 HOH TIP . P 5 HOH D 12 128 110 HOH TIP . P 5 HOH D 13 129 114 HOH TIP . P 5 HOH D 14 130 118 HOH TIP . P 5 HOH D 15 131 120 HOH TIP . P 5 HOH D 16 132 127 HOH TIP . P 5 HOH D 17 133 133 HOH TIP . Q 5 HOH E 1 303 3 HOH TIP . Q 5 HOH E 2 304 13 HOH TIP . Q 5 HOH E 3 305 24 HOH TIP . Q 5 HOH E 4 306 31 HOH TIP . Q 5 HOH E 5 307 33 HOH TIP . Q 5 HOH E 6 308 34 HOH TIP . Q 5 HOH E 7 309 42 HOH TIP . Q 5 HOH E 8 310 45 HOH TIP . Q 5 HOH E 9 311 52 HOH TIP . Q 5 HOH E 10 312 61 HOH TIP . Q 5 HOH E 11 313 65 HOH TIP . Q 5 HOH E 12 314 79 HOH TIP . Q 5 HOH E 13 315 94 HOH TIP . Q 5 HOH E 14 316 113 HOH TIP . Q 5 HOH E 15 317 124 HOH TIP . Q 5 HOH E 16 318 132 HOH TIP . Q 5 HOH E 17 319 136 HOH TIP . Q 5 HOH E 18 320 142 HOH TIP . Q 5 HOH E 19 321 150 HOH TIP . Q 5 HOH E 20 322 153 HOH TIP . R 5 HOH F 1 117 11 HOH TIP . R 5 HOH F 2 118 12 HOH TIP . R 5 HOH F 3 119 26 HOH TIP . R 5 HOH F 4 120 29 HOH TIP . R 5 HOH F 5 121 35 HOH TIP . R 5 HOH F 6 122 39 HOH TIP . R 5 HOH F 7 123 68 HOH TIP . R 5 HOH F 8 124 80 HOH TIP . R 5 HOH F 9 125 83 HOH TIP . R 5 HOH F 10 126 87 HOH TIP . R 5 HOH F 11 127 93 HOH TIP . R 5 HOH F 12 128 104 HOH TIP . R 5 HOH F 13 129 109 HOH TIP . R 5 HOH F 14 130 112 HOH TIP . R 5 HOH F 15 131 115 HOH TIP . R 5 HOH F 16 132 119 HOH TIP . R 5 HOH F 17 133 122 HOH TIP . R 5 HOH F 18 134 128 HOH TIP . R 5 HOH F 19 135 130 HOH TIP . R 5 HOH F 20 136 139 HOH TIP . R 5 HOH F 21 137 145 HOH TIP . R 5 HOH F 22 138 146 HOH TIP . R 5 HOH F 23 139 147 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 4 76.221 4.574 148.637 1 47.57 ? PG ATP 201 C 1 HETATM 2 O O1G ATP . . . J 4 77.655 4.532 149.062 1 48.02 ? O1G ATP 201 C 1 HETATM 3 O O2G ATP . . . J 4 75.945 5.24 147.334 1 49.23 ? O2G ATP 201 C 1 HETATM 4 O O3G ATP . . . J 4 75.635 3.213 148.664 1 45.34 ? O3G ATP 201 C 1 HETATM 5 P PB ATP . . . J 4 73.821 5.656 149.665 1 38.79 ? PB ATP 201 C 1 HETATM 6 O O1B ATP . . . J 4 73.205 5.82 148.396 1 41.75 ? O1B ATP 201 C 1 HETATM 7 O O2B ATP . . . J 4 73.085 5.523 150.891 1 40.53 ? O2B ATP 201 C 1 HETATM 8 O O3B ATP . . . J 4 75.361 5.451 149.63 1 42.39 ? O3B ATP 201 C 1 HETATM 9 P PA ATP . . . J 4 75.003 8.279 149.25 1 32.98 ? PA ATP 201 C 1 HETATM 10 O O1A ATP . . . J 4 74.824 8.88 147.967 1 33.39 ? O1A ATP 201 C 1 HETATM 11 O O2A ATP . . . J 4 76.175 8.519 150.072 1 34.74 ? O2A ATP 201 C 1 HETATM 12 O O3A ATP . . . J 4 73.951 7.283 149.713 1 35.56 ? O3A ATP 201 C 1 HETATM 13 O O5' ATP . . . J 4 74.142 9.365 149.701 1 31.49 ? O5' ATP 201 C 1 HETATM 14 C C5' ATP . . . J 4 73.058 9.912 150.066 1 30.44 ? C5' ATP 201 C 1 HETATM 15 C C4' ATP . . . J 4 71.847 9.957 150.92 1 31.22 ? C4' ATP 201 C 1 HETATM 16 O O4' ATP . . . J 4 71.188 11.136 150.368 1 32.56 ? O4' ATP 201 C 1 HETATM 17 C C3' ATP . . . J 4 71.192 8.731 150.413 1 30.55 ? C3' ATP 201 C 1 HETATM 18 O O3' ATP . . . J 4 71.362 7.548 151.162 1 30.99 ? O3' ATP 201 C 1 HETATM 19 C C2' ATP . . . J 4 69.747 9.242 150.249 1 31.27 ? C2' ATP 201 C 1 HETATM 20 O O2' ATP . . . J 4 69.079 9.142 151.505 1 26.84 ? O2' ATP 201 C 1 HETATM 21 C C1' ATP . . . J 4 69.883 10.727 149.806 1 31.63 ? C1' ATP 201 C 1 HETATM 22 N N9 ATP . . . J 4 69.936 10.925 148.316 1 31.45 ? N9 ATP 201 C 1 HETATM 23 C C8 ATP . . . J 4 71.033 10.959 147.434 1 33.19 ? C8 ATP 201 C 1 HETATM 24 N N7 ATP . . . J 4 70.733 11.156 146.188 1 33.93 ? N7 ATP 201 C 1 HETATM 25 C C5 ATP . . . J 4 69.358 11.26 146.232 1 31.88 ? C5 ATP 201 C 1 HETATM 26 C C6 ATP . . . J 4 68.379 11.487 145.21 1 31.26 ? C6 ATP 201 C 1 HETATM 27 N N6 ATP . . . J 4 68.725 11.638 143.943 1 29.45 ? N6 ATP 201 C 1 HETATM 28 N N1 ATP . . . J 4 67.038 11.544 145.575 1 32.75 ? N1 ATP 201 C 1 HETATM 29 C C2 ATP . . . J 4 66.671 11.392 146.869 1 33.43 ? C2 ATP 201 C 1 HETATM 30 N N3 ATP . . . J 4 67.499 11.175 147.921 1 32.56 ? N3 ATP 201 C 1 HETATM 31 C C4 ATP . . . J 4 68.862 11.123 147.515 1 31.76 ? C4 ATP 201 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 513 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #