data_1TKY # _model_server_result.job_id vlWRklsVSaLJ7wrI8NKTwg _model_server_result.datetime_utc '2024-10-19 17:24:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1TKY # _exptl.entry_id 1TKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "SERINE-3'-AMINOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TKY _cell.length_a 43.563 _cell.length_b 45.429 _cell.length_c 116.532 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H19 N7 O5' _chem_comp.formula_weight 353.334 _chem_comp.id A3S _chem_comp.mon_nstd_flag . _chem_comp.name "SERINE-3'-AMINOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "N'-L-SERYL-3'-AMINO-(3'-DEOXY)-ADENOSINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' A3S sing 1 n n O5' H5' A3S sing 2 n n C5' C4' A3S sing 3 n n C5' "H5'1" A3S sing 4 n n C5' "H5'2" A3S sing 5 n n C4' O4' A3S sing 6 n n C4' C3' A3S sing 7 n n C4' H4' A3S sing 8 n n O4' C1' A3S sing 9 n n C1' N9 A3S sing 10 n n C1' C2' A3S sing 11 n n C1' H1' A3S sing 12 n n N9 C4 A3S sing 13 n y N9 C8 A3S sing 14 n y C4 N3 A3S sing 15 n y C4 C5 A3S doub 16 n y N3 C2 A3S doub 17 n y C2 N1 A3S sing 18 n y C2 H2 A3S sing 19 n n N1 C6 A3S doub 20 n y C6 N6 A3S sing 21 n n C6 C5 A3S sing 22 n y N6 HN61 A3S sing 23 n n N6 HN62 A3S sing 24 n n C5 N7 A3S sing 25 n y N7 C8 A3S doub 26 n y C8 H8 A3S sing 27 n n C2' O2' A3S sing 28 n n C2' C3' A3S sing 29 n n C2' H2' A3S sing 30 n n O2' H1 A3S sing 31 n n C3' N8 A3S sing 32 n n C3' H3' A3S sing 33 n n N8 C A3S sing 34 n n N8 HN8 A3S sing 35 n n N CA A3S sing 36 n n N HN1 A3S sing 37 n n N HN2 A3S sing 38 n n CA CB A3S sing 39 n n CA C A3S sing 40 n n CA HA A3S sing 41 n n CB OG A3S sing 42 n n CB HB1 A3S sing 43 n n CB HB2 A3S sing 44 n n OG HOG A3S sing 45 n n C O A3S doub 46 n n # _atom_sites.entry_id 1TKY _atom_sites.fract_transf_matrix[1][1] 0.022955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3S A 1 500 500 A3S A3S . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . C 3 HOH A 58 558 58 HOH HOH . C 3 HOH A 59 559 59 HOH HOH . C 3 HOH A 60 560 60 HOH HOH . C 3 HOH A 61 561 61 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . C 3 HOH A 63 563 63 HOH HOH . C 3 HOH A 64 564 64 HOH HOH . C 3 HOH A 65 565 65 HOH HOH . C 3 HOH A 66 566 66 HOH HOH . C 3 HOH A 67 567 67 HOH HOH . C 3 HOH A 68 568 68 HOH HOH . C 3 HOH A 69 569 69 HOH HOH . C 3 HOH A 70 570 70 HOH HOH . C 3 HOH A 71 571 71 HOH HOH . C 3 HOH A 72 572 72 HOH HOH . C 3 HOH A 73 573 73 HOH HOH . C 3 HOH A 74 574 74 HOH HOH . C 3 HOH A 75 575 75 HOH HOH . C 3 HOH A 76 576 76 HOH HOH . C 3 HOH A 77 577 77 HOH HOH . C 3 HOH A 78 578 78 HOH HOH . C 3 HOH A 79 579 79 HOH HOH . C 3 HOH A 80 580 80 HOH HOH . C 3 HOH A 81 581 81 HOH HOH . C 3 HOH A 82 582 82 HOH HOH . C 3 HOH A 83 583 83 HOH HOH . C 3 HOH A 84 584 84 HOH HOH . C 3 HOH A 85 585 85 HOH HOH . C 3 HOH A 86 586 86 HOH HOH . C 3 HOH A 87 587 87 HOH HOH . C 3 HOH A 88 588 88 HOH HOH . C 3 HOH A 89 589 89 HOH HOH . C 3 HOH A 90 590 90 HOH HOH . C 3 HOH A 91 591 91 HOH HOH . C 3 HOH A 92 592 92 HOH HOH . C 3 HOH A 93 593 93 HOH HOH . C 3 HOH A 94 594 94 HOH HOH . C 3 HOH A 95 595 95 HOH HOH . C 3 HOH A 96 596 96 HOH HOH . C 3 HOH A 97 597 97 HOH HOH . C 3 HOH A 98 598 98 HOH HOH . C 3 HOH A 99 599 99 HOH HOH . C 3 HOH A 100 600 100 HOH HOH . C 3 HOH A 101 601 101 HOH HOH . C 3 HOH A 102 602 102 HOH HOH . C 3 HOH A 103 603 103 HOH HOH . C 3 HOH A 104 604 104 HOH HOH . C 3 HOH A 105 605 105 HOH HOH . C 3 HOH A 106 606 106 HOH HOH . C 3 HOH A 107 607 107 HOH HOH . C 3 HOH A 108 608 108 HOH HOH . C 3 HOH A 109 609 109 HOH HOH . C 3 HOH A 110 610 110 HOH HOH . C 3 HOH A 111 611 111 HOH HOH . C 3 HOH A 112 612 112 HOH HOH . C 3 HOH A 113 613 113 HOH HOH . C 3 HOH A 114 614 114 HOH HOH . C 3 HOH A 115 615 115 HOH HOH . C 3 HOH A 116 616 116 HOH HOH . C 3 HOH A 117 617 117 HOH HOH . C 3 HOH A 118 618 118 HOH HOH . C 3 HOH A 119 619 119 HOH HOH . C 3 HOH A 120 620 120 HOH HOH . C 3 HOH A 121 621 121 HOH HOH . C 3 HOH A 122 622 122 HOH HOH . C 3 HOH A 123 623 123 HOH HOH . C 3 HOH A 124 624 124 HOH HOH . C 3 HOH A 125 625 125 HOH HOH . C 3 HOH A 126 626 126 HOH HOH . C 3 HOH A 127 627 127 HOH HOH . C 3 HOH A 128 628 128 HOH HOH . C 3 HOH A 129 629 129 HOH HOH . C 3 HOH A 130 630 130 HOH HOH . C 3 HOH A 131 631 131 HOH HOH . C 3 HOH A 132 632 132 HOH HOH . C 3 HOH A 133 633 133 HOH HOH . C 3 HOH A 134 634 134 HOH HOH . C 3 HOH A 135 635 135 HOH HOH . C 3 HOH A 136 636 136 HOH HOH . C 3 HOH A 137 637 137 HOH HOH . C 3 HOH A 138 638 138 HOH HOH . C 3 HOH A 139 639 139 HOH HOH . C 3 HOH A 140 640 140 HOH HOH . C 3 HOH A 141 641 141 HOH HOH . C 3 HOH A 142 642 142 HOH HOH . C 3 HOH A 143 643 143 HOH HOH . C 3 HOH A 144 644 144 HOH HOH . C 3 HOH A 145 645 145 HOH HOH . C 3 HOH A 146 646 146 HOH HOH . C 3 HOH A 147 647 147 HOH HOH . C 3 HOH A 148 648 148 HOH HOH . C 3 HOH A 149 649 149 HOH HOH . C 3 HOH A 150 650 150 HOH HOH . C 3 HOH A 151 651 151 HOH HOH . C 3 HOH A 152 652 152 HOH HOH . C 3 HOH A 153 653 153 HOH HOH . C 3 HOH A 154 654 154 HOH HOH . C 3 HOH A 155 655 155 HOH HOH . C 3 HOH A 156 656 156 HOH HOH . C 3 HOH A 157 657 157 HOH HOH . C 3 HOH A 158 658 158 HOH HOH . C 3 HOH A 159 659 159 HOH HOH . C 3 HOH A 160 660 160 HOH HOH . C 3 HOH A 161 661 161 HOH HOH . C 3 HOH A 162 662 162 HOH HOH . C 3 HOH A 163 663 163 HOH HOH . C 3 HOH A 164 664 164 HOH HOH . C 3 HOH A 165 665 165 HOH HOH . C 3 HOH A 166 666 166 HOH HOH . C 3 HOH A 167 667 167 HOH HOH . C 3 HOH A 168 668 168 HOH HOH . C 3 HOH A 169 669 169 HOH HOH . C 3 HOH A 170 670 170 HOH HOH . C 3 HOH A 171 671 171 HOH HOH . C 3 HOH A 172 672 172 HOH HOH . C 3 HOH A 173 673 173 HOH HOH . C 3 HOH A 174 674 174 HOH HOH . C 3 HOH A 175 675 175 HOH HOH . C 3 HOH A 176 676 177 HOH HOH . C 3 HOH A 177 677 178 HOH HOH . C 3 HOH A 178 678 179 HOH HOH . C 3 HOH A 179 679 180 HOH HOH . C 3 HOH A 180 680 181 HOH HOH . C 3 HOH A 181 681 182 HOH HOH . C 3 HOH A 182 682 183 HOH HOH . C 3 HOH A 183 683 184 HOH HOH . C 3 HOH A 184 684 185 HOH HOH . C 3 HOH A 185 685 186 HOH HOH . C 3 HOH A 186 686 187 HOH HOH . C 3 HOH A 187 687 188 HOH HOH . C 3 HOH A 188 688 189 HOH HOH . C 3 HOH A 189 689 190 HOH HOH . C 3 HOH A 190 690 191 HOH HOH . C 3 HOH A 191 691 192 HOH HOH . C 3 HOH A 192 692 193 HOH HOH . C 3 HOH A 193 693 194 HOH HOH . C 3 HOH A 194 694 195 HOH HOH . C 3 HOH A 195 695 196 HOH HOH . C 3 HOH A 196 696 197 HOH HOH . C 3 HOH A 197 697 199 HOH HOH . C 3 HOH A 198 698 200 HOH HOH . C 3 HOH A 199 699 201 HOH HOH . C 3 HOH A 200 700 202 HOH HOH . C 3 HOH A 201 701 203 HOH HOH . C 3 HOH A 202 702 204 HOH HOH . C 3 HOH A 203 703 205 HOH HOH . C 3 HOH A 204 704 206 HOH HOH . C 3 HOH A 205 705 207 HOH HOH . C 3 HOH A 206 706 208 HOH HOH . C 3 HOH A 207 707 209 HOH HOH . C 3 HOH A 208 708 210 HOH HOH . C 3 HOH A 209 709 211 HOH HOH . C 3 HOH A 210 710 212 HOH HOH . C 3 HOH A 211 711 213 HOH HOH . C 3 HOH A 212 712 214 HOH HOH . C 3 HOH A 213 713 215 HOH HOH . C 3 HOH A 214 714 216 HOH HOH . C 3 HOH A 215 715 217 HOH HOH . C 3 HOH A 216 716 218 HOH HOH . C 3 HOH A 217 717 219 HOH HOH . C 3 HOH A 218 718 220 HOH HOH . C 3 HOH A 219 719 221 HOH HOH . C 3 HOH A 220 720 222 HOH HOH . C 3 HOH A 221 721 223 HOH HOH . C 3 HOH A 222 722 224 HOH HOH . C 3 HOH A 223 723 225 HOH HOH . C 3 HOH A 224 724 226 HOH HOH . C 3 HOH A 225 725 227 HOH HOH . C 3 HOH A 226 726 228 HOH HOH . C 3 HOH A 227 727 229 HOH HOH . C 3 HOH A 228 728 230 HOH HOH . C 3 HOH A 229 729 231 HOH HOH . C 3 HOH A 230 730 233 HOH HOH . C 3 HOH A 231 731 234 HOH HOH . C 3 HOH A 232 732 235 HOH HOH . C 3 HOH A 233 733 236 HOH HOH . C 3 HOH A 234 734 237 HOH HOH . C 3 HOH A 235 735 238 HOH HOH . C 3 HOH A 236 736 239 HOH HOH . C 3 HOH A 237 737 240 HOH HOH . C 3 HOH A 238 738 241 HOH HOH . C 3 HOH A 239 739 242 HOH HOH . C 3 HOH A 240 740 243 HOH HOH . C 3 HOH A 241 741 244 HOH HOH . C 3 HOH A 242 742 245 HOH HOH . C 3 HOH A 243 743 246 HOH HOH . C 3 HOH A 244 744 247 HOH HOH . C 3 HOH A 245 745 248 HOH HOH . C 3 HOH A 246 746 249 HOH HOH . C 3 HOH A 247 747 250 HOH HOH . C 3 HOH A 248 748 251 HOH HOH . C 3 HOH A 249 749 252 HOH HOH . C 3 HOH A 250 750 253 HOH HOH . C 3 HOH A 251 751 254 HOH HOH . C 3 HOH A 252 752 255 HOH HOH . C 3 HOH A 253 753 256 HOH HOH . C 3 HOH A 254 754 257 HOH HOH . C 3 HOH A 255 755 258 HOH HOH . C 3 HOH A 256 756 259 HOH HOH . C 3 HOH A 257 757 260 HOH HOH . C 3 HOH A 258 758 261 HOH HOH . C 3 HOH A 259 759 262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' A3S . . . B 2 13.784 12.887 43.539 1 59.69 ? O5' A3S 500 A 1 HETATM 2 C C5' A3S . . . B 2 14.145 12.035 42.455 1 58.27 ? C5' A3S 500 A 1 HETATM 3 C C4' A3S . . . B 2 15.118 10.977 42.924 1 56.53 ? C4' A3S 500 A 1 HETATM 4 O O4' A3S . . . B 2 16.321 11.628 43.42 1 55.62 ? O4' A3S 500 A 1 HETATM 5 C C1' A3S . . . B 2 16.542 11.258 44.767 1 54.69 ? C1' A3S 500 A 1 HETATM 6 N N9 A3S . . . B 2 17.046 12.427 45.486 1 53.15 ? N9 A3S 500 A 1 HETATM 7 C C4 A3S . . . B 2 18.133 12.463 46.326 1 51.35 ? C4 A3S 500 A 1 HETATM 8 N N3 A3S . . . B 2 18.95 11.446 46.647 1 50.57 ? N3 A3S 500 A 1 HETATM 9 C C2 A3S . . . B 2 19.893 11.85 47.497 1 49.93 ? C2 A3S 500 A 1 HETATM 10 N N1 A3S . . . B 2 20.096 13.066 48.024 1 50.38 ? N1 A3S 500 A 1 HETATM 11 C C6 A3S . . . B 2 19.255 14.067 47.681 1 50.66 ? C6 A3S 500 A 1 HETATM 12 N N6 A3S . . . B 2 19.452 15.277 48.209 1 49.84 ? N6 A3S 500 A 1 HETATM 13 C C5 A3S . . . B 2 18.214 13.767 46.783 1 51.31 ? C5 A3S 500 A 1 HETATM 14 N N7 A3S . . . B 2 17.2 14.542 46.235 1 52.12 ? N7 A3S 500 A 1 HETATM 15 C C8 A3S . . . B 2 16.539 13.704 45.474 1 52.77 ? C8 A3S 500 A 1 HETATM 16 C C2' A3S . . . B 2 15.196 10.77 45.297 1 55.15 ? C2' A3S 500 A 1 HETATM 17 O O2' A3S . . . B 2 15.386 9.88 46.38 1 55.29 ? O2' A3S 500 A 1 HETATM 18 C C3' A3S . . . B 2 14.616 10.092 44.061 1 55.38 ? C3' A3S 500 A 1 HETATM 19 N N8 A3S . . . B 2 15.14 8.769 44.021 1 53.32 ? N8 A3S 500 A 1 HETATM 20 N N A3S . . . B 2 16.067 6.257 44.132 1 50.35 ? N A3S 500 A 1 HETATM 21 C CA A3S . . . B 2 15.373 6.557 42.884 1 50.7 ? CA A3S 500 A 1 HETATM 22 C CB A3S . . . B 2 14.294 5.502 42.624 1 50.38 ? CB A3S 500 A 1 HETATM 23 O OG A3S . . . B 2 13.54 5.246 43.796 1 49.69 ? OG A3S 500 A 1 HETATM 24 C C A3S . . . B 2 14.751 7.95 42.925 1 51.98 ? C A3S 500 A 1 HETATM 25 O O A3S . . . B 2 13.968 8.321 42.049 1 50.4 ? O A3S 500 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #