data_1TL2 # _model_server_result.job_id w854_OjvlG-Ohqldw3ujmQ _model_server_result.datetime_utc '2024-11-29 04:34:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":239}' # _entry.id 1TL2 # _exptl.entry_id 1TL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TL2 _cell.length_a 89.46 _cell.length_b 89.46 _cell.length_c 73.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 224 n n C1 O5 NDG sing 225 n n C1 O1 NDG sing 226 n n C1 H1 NDG sing 227 n n C2 C3 NDG sing 228 n n C2 N2 NDG sing 229 n n C2 H2 NDG sing 230 n n C3 C4 NDG sing 231 n n C3 O3 NDG sing 232 n n C3 H3 NDG sing 233 n n C4 C5 NDG sing 234 n n C4 O4 NDG sing 235 n n C4 H4 NDG sing 236 n n C5 C6 NDG sing 237 n n C5 O5 NDG sing 238 n n C5 H5 NDG sing 239 n n C6 O6 NDG sing 240 n n C6 H61 NDG sing 241 n n C6 H62 NDG sing 242 n n C7 C8 NDG sing 243 n n C7 O7 NDG doub 244 n n C7 N2 NDG sing 245 n n C8 H81 NDG sing 246 n n C8 H82 NDG sing 247 n n C8 H83 NDG sing 248 n n O3 HO3 NDG sing 249 n n O4 HO4 NDG sing 250 n n O6 HO6 NDG sing 251 n n N2 HN2 NDG sing 252 n n O1 HO1 NDG sing 253 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1TL2 _atom_sites.fract_transf_matrix[1][1] 0.011178 _atom_sites.fract_transf_matrix[1][2] 0.006454 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDG A 1 237 237 NDG NAG . C 2 NDG A 1 238 238 NDG NAG . D 2 NDG A 1 239 239 NDG NAG . E 2 NDG A 1 240 240 NDG NAG . F 2 NDG A 1 241 241 NDG NAG . G 3 HOH A 1 242 1 HOH HOH . G 3 HOH A 2 243 2 HOH HOH . G 3 HOH A 3 244 3 HOH HOH . G 3 HOH A 4 245 4 HOH HOH . G 3 HOH A 5 246 5 HOH HOH . G 3 HOH A 6 247 6 HOH HOH . G 3 HOH A 7 248 7 HOH HOH . G 3 HOH A 8 249 8 HOH HOH . G 3 HOH A 9 250 9 HOH HOH . G 3 HOH A 10 251 10 HOH HOH . G 3 HOH A 11 252 11 HOH HOH . G 3 HOH A 12 253 12 HOH HOH . G 3 HOH A 13 254 13 HOH HOH . G 3 HOH A 14 255 14 HOH HOH . G 3 HOH A 15 256 15 HOH HOH . G 3 HOH A 16 257 16 HOH HOH . G 3 HOH A 17 258 17 HOH HOH . G 3 HOH A 18 259 19 HOH HOH . G 3 HOH A 19 260 20 HOH HOH . G 3 HOH A 20 261 21 HOH HOH . G 3 HOH A 21 262 22 HOH HOH . G 3 HOH A 22 263 23 HOH HOH . G 3 HOH A 23 264 24 HOH HOH . G 3 HOH A 24 265 25 HOH HOH . G 3 HOH A 25 266 26 HOH HOH . G 3 HOH A 26 267 27 HOH HOH . G 3 HOH A 27 268 28 HOH HOH . G 3 HOH A 28 269 29 HOH HOH . G 3 HOH A 29 270 30 HOH HOH . G 3 HOH A 30 271 31 HOH HOH . G 3 HOH A 31 272 32 HOH HOH . G 3 HOH A 32 273 33 HOH HOH . G 3 HOH A 33 274 34 HOH HOH . G 3 HOH A 34 275 35 HOH HOH . G 3 HOH A 35 276 36 HOH HOH . G 3 HOH A 36 277 37 HOH HOH . G 3 HOH A 37 278 38 HOH HOH . G 3 HOH A 38 279 39 HOH HOH . G 3 HOH A 39 280 40 HOH HOH . G 3 HOH A 40 281 41 HOH HOH . G 3 HOH A 41 282 42 HOH HOH . G 3 HOH A 42 283 43 HOH HOH . G 3 HOH A 43 284 44 HOH HOH . G 3 HOH A 44 285 45 HOH HOH . G 3 HOH A 45 286 46 HOH HOH . G 3 HOH A 46 287 47 HOH HOH . G 3 HOH A 47 288 48 HOH HOH . G 3 HOH A 48 289 49 HOH HOH . G 3 HOH A 49 290 50 HOH HOH . G 3 HOH A 50 291 51 HOH HOH . G 3 HOH A 51 292 52 HOH HOH . G 3 HOH A 52 293 53 HOH HOH . G 3 HOH A 53 294 54 HOH HOH . G 3 HOH A 54 295 55 HOH HOH . G 3 HOH A 55 296 56 HOH HOH . G 3 HOH A 56 297 57 HOH HOH . G 3 HOH A 57 298 58 HOH HOH . G 3 HOH A 58 299 59 HOH HOH . G 3 HOH A 59 300 60 HOH HOH . G 3 HOH A 60 301 61 HOH HOH . G 3 HOH A 61 302 62 HOH HOH . G 3 HOH A 62 303 63 HOH HOH . G 3 HOH A 63 304 64 HOH HOH . G 3 HOH A 64 305 65 HOH HOH . G 3 HOH A 65 306 66 HOH HOH . G 3 HOH A 66 307 67 HOH HOH . G 3 HOH A 67 308 68 HOH HOH . G 3 HOH A 68 309 69 HOH HOH . G 3 HOH A 69 310 70 HOH HOH . G 3 HOH A 70 311 71 HOH HOH . G 3 HOH A 71 312 72 HOH HOH . G 3 HOH A 72 313 73 HOH HOH . G 3 HOH A 73 314 74 HOH HOH . G 3 HOH A 74 315 75 HOH HOH . G 3 HOH A 75 316 76 HOH HOH . G 3 HOH A 76 317 77 HOH HOH . G 3 HOH A 77 318 78 HOH HOH . G 3 HOH A 78 319 79 HOH HOH . G 3 HOH A 79 320 80 HOH HOH . G 3 HOH A 80 321 81 HOH HOH . G 3 HOH A 81 322 82 HOH HOH . G 3 HOH A 82 323 83 HOH HOH . G 3 HOH A 83 324 84 HOH HOH . G 3 HOH A 84 325 85 HOH HOH . G 3 HOH A 85 326 86 HOH HOH . G 3 HOH A 86 327 87 HOH HOH . G 3 HOH A 87 328 88 HOH HOH . G 3 HOH A 88 329 89 HOH HOH . G 3 HOH A 89 330 91 HOH HOH . G 3 HOH A 90 331 92 HOH HOH . G 3 HOH A 91 332 93 HOH HOH . G 3 HOH A 92 333 94 HOH HOH . G 3 HOH A 93 334 95 HOH HOH . G 3 HOH A 94 335 96 HOH HOH . G 3 HOH A 95 336 97 HOH HOH . G 3 HOH A 96 337 98 HOH HOH . G 3 HOH A 97 338 99 HOH HOH . G 3 HOH A 98 339 100 HOH HOH . G 3 HOH A 99 340 101 HOH HOH . G 3 HOH A 100 341 102 HOH HOH . G 3 HOH A 101 342 103 HOH HOH . G 3 HOH A 102 343 104 HOH HOH . G 3 HOH A 103 344 105 HOH HOH . G 3 HOH A 104 345 106 HOH HOH . G 3 HOH A 105 346 107 HOH HOH . G 3 HOH A 106 347 108 HOH HOH . G 3 HOH A 107 348 109 HOH HOH . G 3 HOH A 108 349 110 HOH HOH . G 3 HOH A 109 350 111 HOH HOH . G 3 HOH A 110 351 112 HOH HOH . G 3 HOH A 111 352 113 HOH HOH . G 3 HOH A 112 353 114 HOH HOH . G 3 HOH A 113 354 115 HOH HOH . G 3 HOH A 114 355 116 HOH HOH . G 3 HOH A 115 356 117 HOH HOH . G 3 HOH A 116 357 118 HOH HOH . G 3 HOH A 117 358 119 HOH HOH . G 3 HOH A 118 359 120 HOH HOH . G 3 HOH A 119 360 121 HOH HOH . G 3 HOH A 120 361 122 HOH HOH . G 3 HOH A 121 362 123 HOH HOH . G 3 HOH A 122 363 124 HOH HOH . G 3 HOH A 123 364 125 HOH HOH . G 3 HOH A 124 365 126 HOH HOH . G 3 HOH A 125 366 127 HOH HOH . G 3 HOH A 126 367 128 HOH HOH . G 3 HOH A 127 368 129 HOH HOH . G 3 HOH A 128 369 130 HOH HOH . G 3 HOH A 129 370 131 HOH HOH . G 3 HOH A 130 371 132 HOH HOH . G 3 HOH A 131 372 133 HOH HOH . G 3 HOH A 132 373 134 HOH HOH . G 3 HOH A 133 374 135 HOH HOH . G 3 HOH A 134 375 137 HOH HOH . G 3 HOH A 135 376 138 HOH HOH . G 3 HOH A 136 377 139 HOH HOH . G 3 HOH A 137 378 140 HOH HOH . G 3 HOH A 138 379 141 HOH HOH . G 3 HOH A 139 380 143 HOH HOH . G 3 HOH A 140 381 144 HOH HOH . G 3 HOH A 141 382 145 HOH HOH . G 3 HOH A 142 383 147 HOH HOH . G 3 HOH A 143 384 149 HOH HOH . G 3 HOH A 144 385 151 HOH HOH . G 3 HOH A 145 386 153 HOH HOH . G 3 HOH A 146 387 154 HOH HOH . G 3 HOH A 147 388 155 HOH HOH . G 3 HOH A 148 389 156 HOH HOH . G 3 HOH A 149 390 157 HOH HOH . G 3 HOH A 150 391 158 HOH HOH . G 3 HOH A 151 392 159 HOH HOH . G 3 HOH A 152 393 161 HOH HOH . G 3 HOH A 153 394 162 HOH HOH . G 3 HOH A 154 395 164 HOH HOH . G 3 HOH A 155 396 165 HOH HOH . G 3 HOH A 156 397 167 HOH HOH . G 3 HOH A 157 398 168 HOH HOH . G 3 HOH A 158 399 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . D 2 -12.704 64.251 21.793 1 28.01 ? C1 NDG 239 A 1 HETATM 2 C C2 NDG . . . D 2 -12.046 63.164 20.945 1 25.73 ? C2 NDG 239 A 1 HETATM 3 C C3 NDG . . . D 2 -10.715 63.708 20.481 1 26.27 ? C3 NDG 239 A 1 HETATM 4 C C4 NDG . . . D 2 -10.905 64.959 19.657 1 28.82 ? C4 NDG 239 A 1 HETATM 5 C C5 NDG . . . D 2 -11.783 65.986 20.389 1 30.62 ? C5 NDG 239 A 1 HETATM 6 C C6 NDG . . . D 2 -12.288 67.068 19.413 1 32.63 ? C6 NDG 239 A 1 HETATM 7 C C7 NDG . . . D 2 -12.66 60.959 21.741 1 27.25 ? C7 NDG 239 A 1 HETATM 8 C C8 NDG . . . D 2 -12.248 59.78 22.599 1 25.71 ? C8 NDG 239 A 1 HETATM 9 O O5 NDG . . . D 2 -12.959 65.348 20.922 1 28.17 ? O5 NDG 239 A 1 HETATM 10 O O3 NDG . . . D 2 -10.007 62.723 19.716 1 23.96 ? O3 NDG 239 A 1 HETATM 11 O O4 NDG . . . D 2 -9.681 65.614 19.321 1 24.84 ? O4 NDG 239 A 1 HETATM 12 O O6 NDG . . . D 2 -12.857 68.127 20.216 1 38.78 ? O6 NDG 239 A 1 HETATM 13 O O7 NDG . . . D 2 -13.695 60.974 21.092 1 27.67 ? O7 NDG 239 A 1 HETATM 14 N N2 NDG . . . D 2 -11.798 61.971 21.755 1 23.57 ? N2 NDG 239 A 1 HETATM 15 O O1 NDG . . . D 2 -12.159 64.516 22.807 1 26.66 ? O1 NDG 239 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #