data_1TL7 # _model_server_result.job_id 6mK-vJ5W9cLz1zdHGqq7lw _model_server_result.datetime_utc '2024-11-23 07:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":100}' # _entry.id 1TL7 # _exptl.entry_id 1TL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 656.328 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TL7 _cell.length_a 118.23 _cell.length_b 133.6 _cell.length_c 70.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O2A ONM . A ONM 100 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc2 G O3B ONM . A ONM 100 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 G O1B ONM . A ONM 100 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 G O3B ONM . A ONM 100 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc5 A OD1 ASP 33 A ASP 396 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc6 A OD2 ASP 33 A ASP 396 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc7 A O ILE 34 A ILE 397 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 A OD1 ASP 77 A ASP 440 1_555 D MN MN . A MN 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc9 A OD2 ASP 77 A ASP 440 1_555 E MN MN . A MN 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc10 C OG SER 54 C SER 54 1_555 H MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc11 C OG1 THR 204 C THR 204 1_555 H MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc12 H MG MG . C MG 403 1_555 J O3G GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc13 H MG MG . C MG 403 1_555 J O2G GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc14 H MG MG . C MG 403 1_555 J O2B GSP . C GSP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc15 H MG MG . C MG 403 1_555 M O HOH . C HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C18 H23 N6 O15 P3' _chem_comp.formula_weight 656.328 _chem_comp.id ONM _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA7 NA1 ONM sing 352 n n CA7 HA71 ONM sing 353 n n CA7 HA72 ONM sing 354 n n CA7 HA73 ONM sing 355 n n NA1 CA6 ONM sing 356 n n NA1 HA1 ONM sing 357 n n CA6 CA5 ONM doub 358 n y CA6 CA1 ONM sing 359 n y CA5 CA4 ONM sing 360 n y CA5 HA5 ONM sing 361 n n CA4 CA3 ONM doub 362 n y CA4 HA4 ONM sing 363 n n CA3 CA2 ONM sing 364 n y CA3 HA3 ONM sing 365 n n CA2 CA1 ONM doub 366 n y CA2 HA2 ONM sing 367 n n CA1 CA ONM sing 368 n n CA OA ONM doub 369 n n CA O3' ONM sing 370 n n O3' C3' ONM sing 371 n n C3' C2' ONM sing 372 n n C3' C4' ONM sing 373 n n C3' H3' ONM sing 374 n n C2' O2' ONM sing 375 n n C2' C1' ONM sing 376 n n C2' H1 ONM sing 377 n n O2' H2' ONM sing 378 n n C4' C5' ONM sing 379 n n C4' O4' ONM sing 380 n n C4' H4' ONM sing 381 n n C5' O5' ONM sing 382 n n C5' "H5'1" ONM sing 383 n n C5' "H5'2" ONM sing 384 n n O5' PA ONM sing 385 n n PA O3A ONM doub 386 n n PA O2A ONM sing 387 n n PA O1A ONM sing 388 n n O2A H2A ONM sing 389 n n O1A PB ONM sing 390 n n PB O3B ONM doub 391 n n PB O2B ONM sing 392 n n PB O1B ONM sing 393 n n O2B H2B ONM sing 394 n n O1B PG ONM sing 395 n n PG O2G ONM doub 396 n n PG O3G ONM sing 397 n n PG O1G ONM sing 398 n n O3G H3G ONM sing 399 n n O1G H1G ONM sing 400 n n O4' C1' ONM sing 401 n n C1' N9 ONM sing 402 n n C1' H1' ONM sing 403 n n N9 C8 ONM sing 404 n y N9 C4 ONM sing 405 n y C8 N7 ONM doub 406 n y C8 H8 ONM sing 407 n n N7 C5 ONM sing 408 n y C5 C4 ONM doub 409 n y C5 C6 ONM sing 410 n n C4 N3 ONM sing 411 n n N3 C2 ONM doub 412 n n C2 N2 ONM sing 413 n n C2 N1 ONM sing 414 n n N2 HN21 ONM sing 415 n n N2 HN22 ONM sing 416 n n N1 C6 ONM sing 417 n n N1 HN1 ONM sing 418 n n C6 O6 ONM doub 419 n n # _atom_sites.entry_id 1TL7 _atom_sites.fract_transf_matrix[1][1] 0.008458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 581 502 MN MN . E 4 MN A 1 582 503 MN MN . F 5 FOK A 1 101 101 FOK FOK . G 6 ONM A 1 100 100 ONM ONM . H 7 MG C 1 403 396 MG MG . I 8 CL C 1 404 397 CL CL . J 9 GSP C 1 405 395 GSP GSP . K 10 HOH A 1 22 22 HOH HOH . L 10 HOH B 1 13 13 HOH HOH . L 10 HOH B 2 14 14 HOH HOH . L 10 HOH B 3 15 15 HOH HOH . L 10 HOH B 4 24 24 HOH HOH . L 10 HOH B 5 26 26 HOH HOH . L 10 HOH B 6 28 28 HOH HOH . L 10 HOH B 7 29 29 HOH HOH . L 10 HOH B 8 37 37 HOH HOH . L 10 HOH B 9 52 52 HOH HOH . M 10 HOH C 1 406 2 HOH HOH . M 10 HOH C 2 407 3 HOH HOH . M 10 HOH C 3 408 38 HOH HOH . M 10 HOH C 4 409 41 HOH HOH . M 10 HOH C 5 410 43 HOH HOH . M 10 HOH C 6 411 51 HOH HOH . M 10 HOH C 7 412 10 HOH HOH . M 10 HOH C 8 413 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA7 ONM . . . G 6 66.856 -14.333 54.333 1 56.04 ? CA7 ONM 100 A 1 HETATM 2 N NA1 ONM . . . G 6 65.409 -14.642 54.456 1 55.69 ? NA1 ONM 100 A 1 HETATM 3 C CA6 ONM . . . G 6 64.828 -15.841 54.739 1 54.21 ? CA6 ONM 100 A 1 HETATM 4 C CA5 ONM . . . G 6 65.655 -17.095 54.976 1 53.1 ? CA5 ONM 100 A 1 HETATM 5 C CA4 ONM . . . G 6 65 -18.511 55.315 1 53.33 ? CA4 ONM 100 A 1 HETATM 6 C CA3 ONM . . . G 6 63.565 -18.492 55.372 1 52.85 ? CA3 ONM 100 A 1 HETATM 7 C CA2 ONM . . . G 6 62.767 -17.165 55.117 1 54.03 ? CA2 ONM 100 A 1 HETATM 8 C CA1 ONM . . . G 6 63.402 -15.926 54.819 1 53.71 ? CA1 ONM 100 A 1 HETATM 9 C CA ONM . . . G 6 62.458 -14.705 54.598 1 52.6 ? CA ONM 100 A 1 HETATM 10 O OA ONM . . . G 6 62.755 -13.423 55.239 1 57.44 ? OA ONM 100 A 1 HETATM 11 O O3' ONM . . . G 6 61.329 -14.829 53.816 1 49.47 ? O3' ONM 100 A 1 HETATM 12 C C3' ONM . . . G 6 60.256 -13.815 53.679 1 46.12 ? C3' ONM 100 A 1 HETATM 13 C C2' ONM . . . G 6 59.273 -14.357 52.657 1 45.56 ? C2' ONM 100 A 1 HETATM 14 O O2' ONM . . . G 6 59.9 -15.147 51.634 1 46.29 ? O2' ONM 100 A 1 HETATM 15 C C4' ONM . . . G 6 59.313 -13.571 54.906 1 45.02 ? C4' ONM 100 A 1 HETATM 16 C C5' ONM . . . G 6 58.491 -12.271 55.149 1 51.3 ? C5' ONM 100 A 1 HETATM 17 O O5' ONM . . . G 6 58.495 -11.217 54.171 1 60.84 ? O5' ONM 100 A 1 HETATM 18 P PA ONM . . . G 6 57.589 -9.881 54.368 1 64.98 ? PA ONM 100 A 1 HETATM 19 O O3A ONM . . . G 6 58.032 -9.046 53.052 1 63.85 ? O3A ONM 100 A 1 HETATM 20 O O2A ONM . . . G 6 56.168 -10.307 54.343 1 62.89 ? O2A ONM 100 A 1 HETATM 21 O O1A ONM . . . G 6 58.252 -9.153 55.607 1 62.46 ? O1A ONM 100 A 1 HETATM 22 P PB ONM . . . G 6 57.398 -8.961 56.944 1 59.27 ? PB ONM 100 A 1 HETATM 23 O O3B ONM . . . G 6 56.472 -10.29 57.064 1 54.32 ? O3B ONM 100 A 1 HETATM 24 O O2B ONM . . . G 6 56.353 -7.919 56.826 1 55.73 ? O2B ONM 100 A 1 HETATM 25 O O1B ONM . . . G 6 58.22 -9.026 58.207 1 59.56 ? O1B ONM 100 A 1 HETATM 26 P PG ONM . . . G 6 59.098 -7.754 58.175 1 61.43 ? PG ONM 100 A 1 HETATM 27 O O2G ONM . . . G 6 60.686 -7.901 58.293 1 62.83 ? O2G ONM 100 A 1 HETATM 28 O O3G ONM . . . G 6 58.496 -6.261 58.093 1 45.25 ? O3G ONM 100 A 1 HETATM 29 O O1G ONM . . . G 6 58.601 -7.467 59.533 1 60.24 ? O1G ONM 100 A 1 HETATM 30 O O4' ONM . . . G 6 58.393 -14.675 54.89 1 44.76 ? O4' ONM 100 A 1 HETATM 31 C C1' ONM . . . G 6 58.365 -15.193 53.533 1 49.12 ? C1' ONM 100 A 1 HETATM 32 N N9 ONM . . . G 6 56.977 -15.378 53.021 1 52.28 ? N9 ONM 100 A 1 HETATM 33 C C8 ONM . . . G 6 55.964 -14.514 52.893 1 54.66 ? C8 ONM 100 A 1 HETATM 34 N N7 ONM . . . G 6 54.926 -15.113 52.297 1 55.28 ? N7 ONM 100 A 1 HETATM 35 C C5 ONM . . . G 6 55.29 -16.355 52.012 1 54.19 ? C5 ONM 100 A 1 HETATM 36 C C4 ONM . . . G 6 56.602 -16.517 52.459 1 53.36 ? C4 ONM 100 A 1 HETATM 37 N N3 ONM . . . G 6 57.281 -17.702 52.302 1 56.65 ? N3 ONM 100 A 1 HETATM 38 C C2 ONM . . . G 6 56.724 -18.794 51.706 1 57.19 ? C2 ONM 100 A 1 HETATM 39 N N2 ONM . . . G 6 57.421 -19.917 51.584 1 57.7 ? N2 ONM 100 A 1 HETATM 40 N N1 ONM . . . G 6 55.393 -18.701 51.23 1 56.28 ? N1 ONM 100 A 1 HETATM 41 C C6 ONM . . . G 6 54.68 -17.477 51.383 1 56.12 ? C6 ONM 100 A 1 HETATM 42 O O6 ONM . . . G 6 53.532 -17.446 50.948 1 63.57 ? O6 ONM 100 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 740 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #