data_1TLC # _model_server_result.job_id FK7OB4P7w3WGAkhM67hmiw _model_server_result.datetime_utc '2024-10-19 08:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":265}' # _entry.id 1TLC # _exptl.entry_id 1TLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TLC _cell.length_a 127.14 _cell.length_b 127.14 _cell.length_c 67.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale2 B C FMT 1 B FMT 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id DGP _chem_comp.mon_nstd_flag n _chem_comp.name "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TLC _atom_sites.fract_transf_matrix[1][1] 0.007865 _atom_sites.fract_transf_matrix[1][2] 0.004541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DGP A 1 265 1 DGP DGP . D 3 F89 A 1 266 2 F89 F89 . E 2 DGP B 1 265 1 DGP DGP . F 3 F89 B 1 266 2 F89 F89 . G 4 HOH A 1 268 268 HOH HOH . G 4 HOH A 2 271 271 HOH HOH . G 4 HOH A 3 272 272 HOH HOH . G 4 HOH A 4 273 273 HOH HOH . G 4 HOH A 5 274 274 HOH HOH . G 4 HOH A 6 275 275 HOH HOH . G 4 HOH A 7 276 276 HOH HOH . G 4 HOH A 8 278 278 HOH HOH . G 4 HOH A 9 279 279 HOH HOH . G 4 HOH A 10 280 280 HOH HOH . G 4 HOH A 11 284 284 HOH HOH . G 4 HOH A 12 286 286 HOH HOH . G 4 HOH A 13 287 287 HOH HOH . G 4 HOH A 14 288 288 HOH HOH . G 4 HOH A 15 289 289 HOH HOH . G 4 HOH A 16 290 290 HOH HOH . G 4 HOH A 17 291 291 HOH HOH . G 4 HOH A 18 292 292 HOH HOH . G 4 HOH A 19 294 294 HOH HOH . G 4 HOH A 20 295 295 HOH HOH . G 4 HOH A 21 297 297 HOH HOH . G 4 HOH A 22 298 298 HOH HOH . G 4 HOH A 23 299 299 HOH HOH . G 4 HOH A 24 300 300 HOH HOH . G 4 HOH A 25 301 301 HOH HOH . G 4 HOH A 26 302 302 HOH HOH . G 4 HOH A 27 303 303 HOH HOH . G 4 HOH A 28 304 304 HOH HOH . G 4 HOH A 29 305 305 HOH HOH . G 4 HOH A 30 306 306 HOH HOH . G 4 HOH A 31 307 307 HOH HOH . G 4 HOH A 32 308 308 HOH HOH . G 4 HOH A 33 310 310 HOH HOH . G 4 HOH A 34 312 312 HOH HOH . G 4 HOH A 35 313 313 HOH HOH . G 4 HOH A 36 314 314 HOH HOH . G 4 HOH A 37 315 315 HOH HOH . G 4 HOH A 38 316 316 HOH HOH . G 4 HOH A 39 317 317 HOH HOH . G 4 HOH A 40 320 320 HOH HOH . G 4 HOH A 41 322 322 HOH HOH . G 4 HOH A 42 323 323 HOH HOH . G 4 HOH A 43 324 324 HOH HOH . G 4 HOH A 44 325 325 HOH HOH . G 4 HOH A 45 327 327 HOH HOH . G 4 HOH A 46 329 329 HOH HOH . G 4 HOH A 47 330 330 HOH HOH . G 4 HOH A 48 331 331 HOH HOH . G 4 HOH A 49 333 333 HOH HOH . G 4 HOH A 50 334 334 HOH HOH . G 4 HOH A 51 335 335 HOH HOH . G 4 HOH A 52 336 336 HOH HOH . G 4 HOH A 53 337 337 HOH HOH . G 4 HOH A 54 338 338 HOH HOH . G 4 HOH A 55 340 340 HOH HOH . G 4 HOH A 56 341 341 HOH HOH . G 4 HOH A 57 342 342 HOH HOH . G 4 HOH A 58 344 344 HOH HOH . G 4 HOH A 59 345 345 HOH HOH . G 4 HOH A 60 346 346 HOH HOH . G 4 HOH A 61 348 348 HOH HOH . G 4 HOH A 62 349 349 HOH HOH . G 4 HOH A 63 350 350 HOH HOH . G 4 HOH A 64 351 351 HOH HOH . G 4 HOH A 65 352 352 HOH HOH . G 4 HOH A 66 353 353 HOH HOH . G 4 HOH A 67 354 354 HOH HOH . G 4 HOH A 68 355 355 HOH HOH . G 4 HOH A 69 357 357 HOH HOH . G 4 HOH A 70 358 358 HOH HOH . G 4 HOH A 71 359 359 HOH HOH . G 4 HOH A 72 360 360 HOH HOH . G 4 HOH A 73 361 361 HOH HOH . G 4 HOH A 74 364 364 HOH HOH . G 4 HOH A 75 365 365 HOH HOH . G 4 HOH A 76 366 366 HOH HOH . G 4 HOH A 77 367 367 HOH HOH . G 4 HOH A 78 368 368 HOH HOH . G 4 HOH A 79 369 369 HOH HOH . G 4 HOH A 80 377 377 HOH HOH . G 4 HOH A 81 384 384 HOH HOH . G 4 HOH A 82 386 386 HOH HOH . G 4 HOH A 83 387 387 HOH HOH . G 4 HOH A 84 389 389 HOH HOH . G 4 HOH A 85 392 392 HOH HOH . G 4 HOH A 86 393 393 HOH HOH . G 4 HOH A 87 395 395 HOH HOH . G 4 HOH A 88 401 401 HOH HOH . G 4 HOH A 89 403 403 HOH HOH . G 4 HOH A 90 406 406 HOH HOH . G 4 HOH A 91 407 407 HOH HOH . G 4 HOH A 92 408 408 HOH HOH . G 4 HOH A 93 412 412 HOH HOH . G 4 HOH A 94 413 413 HOH HOH . G 4 HOH A 95 414 414 HOH HOH . G 4 HOH A 96 415 415 HOH HOH . G 4 HOH A 97 416 416 HOH HOH . G 4 HOH A 98 417 417 HOH HOH . G 4 HOH A 99 419 419 HOH HOH . G 4 HOH A 100 420 420 HOH HOH . G 4 HOH A 101 421 421 HOH HOH . G 4 HOH A 102 422 422 HOH HOH . G 4 HOH A 103 423 423 HOH HOH . G 4 HOH A 104 426 426 HOH HOH . G 4 HOH A 105 427 427 HOH HOH . G 4 HOH A 106 428 428 HOH HOH . G 4 HOH A 107 429 429 HOH HOH . H 4 HOH B 1 267 267 HOH HOH . H 4 HOH B 2 269 269 HOH HOH . H 4 HOH B 3 270 270 HOH HOH . H 4 HOH B 4 277 277 HOH HOH . H 4 HOH B 5 281 281 HOH HOH . H 4 HOH B 6 282 282 HOH HOH . H 4 HOH B 7 283 283 HOH HOH . H 4 HOH B 8 285 285 HOH HOH . H 4 HOH B 9 293 293 HOH HOH . H 4 HOH B 10 296 296 HOH HOH . H 4 HOH B 11 309 309 HOH HOH . H 4 HOH B 12 311 311 HOH HOH . H 4 HOH B 13 318 318 HOH HOH . H 4 HOH B 14 319 319 HOH HOH . H 4 HOH B 15 321 321 HOH HOH . H 4 HOH B 16 326 326 HOH HOH . H 4 HOH B 17 328 328 HOH HOH . H 4 HOH B 18 332 332 HOH HOH . H 4 HOH B 19 339 339 HOH HOH . H 4 HOH B 20 343 343 HOH HOH . H 4 HOH B 21 347 347 HOH HOH . H 4 HOH B 22 356 356 HOH HOH . H 4 HOH B 23 362 362 HOH HOH . H 4 HOH B 24 363 363 HOH HOH . H 4 HOH B 25 370 370 HOH HOH . H 4 HOH B 26 371 371 HOH HOH . H 4 HOH B 27 372 372 HOH HOH . H 4 HOH B 28 373 373 HOH HOH . H 4 HOH B 29 374 374 HOH HOH . H 4 HOH B 30 375 375 HOH HOH . H 4 HOH B 31 376 376 HOH HOH . H 4 HOH B 32 378 378 HOH HOH . H 4 HOH B 33 379 379 HOH HOH . H 4 HOH B 34 380 380 HOH HOH . H 4 HOH B 35 381 381 HOH HOH . H 4 HOH B 36 382 382 HOH HOH . H 4 HOH B 37 383 383 HOH HOH . H 4 HOH B 38 385 385 HOH HOH . H 4 HOH B 39 388 388 HOH HOH . H 4 HOH B 40 390 390 HOH HOH . H 4 HOH B 41 391 391 HOH HOH . H 4 HOH B 42 394 394 HOH HOH . H 4 HOH B 43 396 396 HOH HOH . H 4 HOH B 44 397 397 HOH HOH . H 4 HOH B 45 398 398 HOH HOH . H 4 HOH B 46 399 399 HOH HOH . H 4 HOH B 47 400 400 HOH HOH . H 4 HOH B 48 402 402 HOH HOH . H 4 HOH B 49 404 404 HOH HOH . H 4 HOH B 50 405 405 HOH HOH . H 4 HOH B 51 409 409 HOH HOH . H 4 HOH B 52 410 410 HOH HOH . H 4 HOH B 53 411 411 HOH HOH . H 4 HOH B 54 418 418 HOH HOH . H 4 HOH B 55 424 424 HOH HOH . H 4 HOH B 56 425 425 HOH HOH . H 4 HOH B 57 430 430 HOH HOH . H 4 HOH B 58 431 431 HOH HOH . H 4 HOH B 59 432 432 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P DGP . . . C 2 14.941 24.087 26.27 1 14.14 ? P DGP 265 A 1 HETATM 2 O OP1 DGP . . . C 2 13.982 25.023 25.683 1 16.12 ? OP1 DGP 265 A 1 HETATM 3 O OP2 DGP . . . C 2 15.939 24.806 27.085 1 13.7 ? OP2 DGP 265 A 1 HETATM 4 O OP3 DGP . . . C 2 15.744 23.426 25.135 1 13.42 ? OP3 DGP 265 A 1 HETATM 5 O O5' DGP . . . C 2 14.487 22.932 27.224 1 14 ? O5' DGP 265 A 1 HETATM 6 C C5' DGP . . . C 2 14.946 21.957 27.923 1 11.61 ? C5' DGP 265 A 1 HETATM 7 C C4' DGP . . . C 2 14.106 22.067 29.372 1 11.07 ? C4' DGP 265 A 1 HETATM 8 O O4' DGP . . . C 2 14.582 20.885 30.019 1 11.14 ? O4' DGP 265 A 1 HETATM 9 C C3' DGP . . . C 2 14.718 23.158 30.263 1 8.94 ? C3' DGP 265 A 1 HETATM 10 O O3' DGP . . . C 2 13.836 23.35 31.376 1 7.39 ? O3' DGP 265 A 1 HETATM 11 C C2' DGP . . . C 2 16.032 22.63 30.618 1 9.49 ? C2' DGP 265 A 1 HETATM 12 C C1' DGP . . . C 2 15.482 21.221 31.073 1 9.2 ? C1' DGP 265 A 1 HETATM 13 N N9 DGP . . . C 2 16.449 20.199 31.008 1 11.32 ? N9 DGP 265 A 1 HETATM 14 C C8 DGP . . . C 2 16.646 19.321 29.978 1 10.37 ? C8 DGP 265 A 1 HETATM 15 N N7 DGP . . . C 2 17.7 18.463 30.129 1 11.15 ? N7 DGP 265 A 1 HETATM 16 C C5 DGP . . . C 2 18.186 18.817 31.363 1 10.3 ? C5 DGP 265 A 1 HETATM 17 C C6 DGP . . . C 2 19.248 18.325 32.109 1 10.27 ? C6 DGP 265 A 1 HETATM 18 O O6 DGP . . . C 2 20.056 17.394 31.95 1 13.86 ? O6 DGP 265 A 1 HETATM 19 N N1 DGP . . . C 2 19.35 18.956 33.265 1 10.52 ? N1 DGP 265 A 1 HETATM 20 C C2 DGP . . . C 2 18.649 19.99 33.787 1 7.92 ? C2 DGP 265 A 1 HETATM 21 N N2 DGP . . . C 2 18.83 20.536 34.943 1 7.52 ? N2 DGP 265 A 1 HETATM 22 N N3 DGP . . . C 2 17.664 20.481 33.109 1 8.31 ? N3 DGP 265 A 1 HETATM 23 C C4 DGP . . . C 2 17.482 19.856 31.917 1 9.88 ? C4 DGP 265 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #