data_1TLS # _model_server_result.job_id z7re0Vl954W5WDCrzEcKzA _model_server_result.datetime_utc '2024-11-23 21:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":265}' # _entry.id 1TLS # _exptl.entry_id 1TLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.172 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TLS _cell.length_a 126.78 _cell.length_b 126.78 _cell.length_c 67.71 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.275 ? covale ? covale2 A SG CYS 146 A CYS 146 1_555 C C6 UFP . A UFP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? covale ? covale3 C C5 UFP . A UFP 265 1_555 D C11 C2F . A C2F 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale4 C F5 UFP . A UFP 265 1_555 D C11 C2F . A C2F 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? covale ? covale5 B C CXM 1 B CXM 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale6 B SG CYS 146 B CYS 146 1_555 E C6 UFP . B UFP 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? covale ? covale7 E C5 UFP . B UFP 265 1_555 F C11 C2F . B C2F 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale8 E F5 UFP . B UFP 265 1_555 F C11 C2F . B C2F 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? # _chem_comp.formula 'C9 H12 F N2 O8 P' _chem_comp.formula_weight 326.172 _chem_comp.id UFP _chem_comp.mon_nstd_flag . _chem_comp.name "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UFP sing 440 n n N1 C6 UFP sing 441 n n N1 C1' UFP sing 442 n n C2 N3 UFP sing 443 n n C2 O2 UFP doub 444 n n N3 C4 UFP sing 445 n n N3 HN3 UFP sing 446 n n C4 C5 UFP sing 447 n n C4 O4 UFP doub 448 n n C5 C6 UFP doub 449 n n C5 F5 UFP sing 450 n n C6 H6 UFP sing 451 n n C1' C2' UFP sing 452 n n C1' O4' UFP sing 453 n n C1' H1' UFP sing 454 n n C2' C3' UFP sing 455 n n C2' "H2'1" UFP sing 456 n n C2' "H2'2" UFP sing 457 n n C3' C4' UFP sing 458 n n C3' O3' UFP sing 459 n n C3' H3' UFP sing 460 n n C4' O4' UFP sing 461 n n C4' C5' UFP sing 462 n n C4' H4' UFP sing 463 n n O3' HO3' UFP sing 464 n n C5' O5' UFP sing 465 n n C5' "H5'1" UFP sing 466 n n C5' "H5'2" UFP sing 467 n n O5' P UFP sing 468 n n P O1P UFP doub 469 n n P O2P UFP sing 470 n n P O3P UFP sing 471 n n O2P HOP2 UFP sing 472 n n O3P HOP3 UFP sing 473 n n # _atom_sites.entry_id 1TLS _atom_sites.fract_transf_matrix[1][1] 0.007888 _atom_sites.fract_transf_matrix[1][2] 0.004554 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UFP A 1 265 265 UFP UFP . D 3 C2F A 1 266 266 C2F C2F . E 2 UFP B 1 265 265 UFP UFP . F 3 C2F B 1 266 266 C2F C2F . G 4 HOH A 1 270 270 HOH HOH . G 4 HOH A 2 271 271 HOH HOH . G 4 HOH A 3 272 272 HOH HOH . G 4 HOH A 4 273 273 HOH HOH . G 4 HOH A 5 274 274 HOH HOH . G 4 HOH A 6 275 275 HOH HOH . G 4 HOH A 7 276 276 HOH HOH . G 4 HOH A 8 278 278 HOH HOH . G 4 HOH A 9 282 282 HOH HOH . G 4 HOH A 10 283 283 HOH HOH . G 4 HOH A 11 284 284 HOH HOH . G 4 HOH A 12 285 285 HOH HOH . G 4 HOH A 13 286 286 HOH HOH . G 4 HOH A 14 287 287 HOH HOH . G 4 HOH A 15 288 288 HOH HOH . G 4 HOH A 16 289 289 HOH HOH . G 4 HOH A 17 290 290 HOH HOH . G 4 HOH A 18 291 291 HOH HOH . G 4 HOH A 19 292 292 HOH HOH . G 4 HOH A 20 293 293 HOH HOH . G 4 HOH A 21 294 294 HOH HOH . G 4 HOH A 22 295 295 HOH HOH . G 4 HOH A 23 296 296 HOH HOH . G 4 HOH A 24 297 297 HOH HOH . G 4 HOH A 25 298 298 HOH HOH . G 4 HOH A 26 299 299 HOH HOH . G 4 HOH A 27 300 300 HOH HOH . G 4 HOH A 28 301 301 HOH HOH . G 4 HOH A 29 302 302 HOH HOH . G 4 HOH A 30 303 303 HOH HOH . G 4 HOH A 31 304 304 HOH HOH . G 4 HOH A 32 305 305 HOH HOH . G 4 HOH A 33 306 306 HOH HOH . G 4 HOH A 34 307 307 HOH HOH . G 4 HOH A 35 309 309 HOH HOH . G 4 HOH A 36 311 311 HOH HOH . G 4 HOH A 37 313 313 HOH HOH . G 4 HOH A 38 314 314 HOH HOH . G 4 HOH A 39 315 315 HOH HOH . G 4 HOH A 40 316 316 HOH HOH . G 4 HOH A 41 318 318 HOH HOH . G 4 HOH A 42 319 319 HOH HOH . G 4 HOH A 43 321 321 HOH HOH . G 4 HOH A 44 322 322 HOH HOH . G 4 HOH A 45 325 325 HOH HOH . G 4 HOH A 46 326 326 HOH HOH . G 4 HOH A 47 327 327 HOH HOH . G 4 HOH A 48 328 328 HOH HOH . G 4 HOH A 49 329 329 HOH HOH . G 4 HOH A 50 331 331 HOH HOH . G 4 HOH A 51 332 332 HOH HOH . G 4 HOH A 52 333 333 HOH HOH . G 4 HOH A 53 334 334 HOH HOH . G 4 HOH A 54 335 335 HOH HOH . G 4 HOH A 55 336 336 HOH HOH . G 4 HOH A 56 337 337 HOH HOH . G 4 HOH A 57 338 338 HOH HOH . G 4 HOH A 58 339 339 HOH HOH . G 4 HOH A 59 359 359 HOH HOH . G 4 HOH A 60 363 363 HOH HOH . G 4 HOH A 61 364 364 HOH HOH . G 4 HOH A 62 365 365 HOH HOH . G 4 HOH A 63 366 366 HOH HOH . G 4 HOH A 64 367 367 HOH HOH . G 4 HOH A 65 368 368 HOH HOH . G 4 HOH A 66 369 369 HOH HOH . G 4 HOH A 67 370 370 HOH HOH . G 4 HOH A 68 373 373 HOH HOH . G 4 HOH A 69 376 376 HOH HOH . G 4 HOH A 70 377 377 HOH HOH . G 4 HOH A 71 378 378 HOH HOH . G 4 HOH A 72 379 379 HOH HOH . G 4 HOH A 73 380 380 HOH HOH . G 4 HOH A 74 381 381 HOH HOH . G 4 HOH A 75 382 382 HOH HOH . G 4 HOH A 76 383 383 HOH HOH . G 4 HOH A 77 384 384 HOH HOH . G 4 HOH A 78 385 385 HOH HOH . G 4 HOH A 79 386 386 HOH HOH . G 4 HOH A 80 387 387 HOH HOH . G 4 HOH A 81 388 388 HOH HOH . G 4 HOH A 82 389 389 HOH HOH . G 4 HOH A 83 391 391 HOH HOH . G 4 HOH A 84 392 392 HOH HOH . G 4 HOH A 85 394 394 HOH HOH . G 4 HOH A 86 395 395 HOH HOH . G 4 HOH A 87 396 396 HOH HOH . G 4 HOH A 88 398 398 HOH HOH . G 4 HOH A 89 399 399 HOH HOH . G 4 HOH A 90 400 400 HOH HOH . G 4 HOH A 91 401 401 HOH HOH . G 4 HOH A 92 402 402 HOH HOH . G 4 HOH A 93 403 403 HOH HOH . G 4 HOH A 94 404 404 HOH HOH . G 4 HOH A 95 405 405 HOH HOH . G 4 HOH A 96 406 406 HOH HOH . G 4 HOH A 97 407 407 HOH HOH . G 4 HOH A 98 408 408 HOH HOH . G 4 HOH A 99 431 431 HOH HOH . G 4 HOH A 100 432 432 HOH HOH . G 4 HOH A 101 433 433 HOH HOH . G 4 HOH A 102 435 435 HOH HOH . G 4 HOH A 103 436 436 HOH HOH . G 4 HOH A 104 437 437 HOH HOH . G 4 HOH A 105 439 439 HOH HOH . G 4 HOH A 106 440 440 HOH HOH . G 4 HOH A 107 451 451 HOH HOH . G 4 HOH A 108 452 452 HOH HOH . G 4 HOH A 109 453 453 HOH HOH . G 4 HOH A 110 455 455 HOH HOH . H 4 HOH B 1 277 277 HOH HOH . H 4 HOH B 2 279 279 HOH HOH . H 4 HOH B 3 280 280 HOH HOH . H 4 HOH B 4 281 281 HOH HOH . H 4 HOH B 5 308 308 HOH HOH . H 4 HOH B 6 310 310 HOH HOH . H 4 HOH B 7 312 312 HOH HOH . H 4 HOH B 8 317 317 HOH HOH . H 4 HOH B 9 320 320 HOH HOH . H 4 HOH B 10 323 323 HOH HOH . H 4 HOH B 11 324 324 HOH HOH . H 4 HOH B 12 330 330 HOH HOH . H 4 HOH B 13 340 340 HOH HOH . H 4 HOH B 14 341 341 HOH HOH . H 4 HOH B 15 342 342 HOH HOH . H 4 HOH B 16 343 343 HOH HOH . H 4 HOH B 17 344 344 HOH HOH . H 4 HOH B 18 345 345 HOH HOH . H 4 HOH B 19 346 346 HOH HOH . H 4 HOH B 20 347 347 HOH HOH . H 4 HOH B 21 348 348 HOH HOH . H 4 HOH B 22 349 349 HOH HOH . H 4 HOH B 23 350 350 HOH HOH . H 4 HOH B 24 351 351 HOH HOH . H 4 HOH B 25 352 352 HOH HOH . H 4 HOH B 26 353 353 HOH HOH . H 4 HOH B 27 354 354 HOH HOH . H 4 HOH B 28 355 355 HOH HOH . H 4 HOH B 29 356 356 HOH HOH . H 4 HOH B 30 357 357 HOH HOH . H 4 HOH B 31 358 358 HOH HOH . H 4 HOH B 32 360 360 HOH HOH . H 4 HOH B 33 361 361 HOH HOH . H 4 HOH B 34 362 362 HOH HOH . H 4 HOH B 35 371 371 HOH HOH . H 4 HOH B 36 372 372 HOH HOH . H 4 HOH B 37 374 374 HOH HOH . H 4 HOH B 38 375 375 HOH HOH . H 4 HOH B 39 390 390 HOH HOH . H 4 HOH B 40 393 393 HOH HOH . H 4 HOH B 41 397 397 HOH HOH . H 4 HOH B 42 409 409 HOH HOH . H 4 HOH B 43 410 410 HOH HOH . H 4 HOH B 44 411 411 HOH HOH . H 4 HOH B 45 412 412 HOH HOH . H 4 HOH B 46 413 413 HOH HOH . H 4 HOH B 47 414 414 HOH HOH . H 4 HOH B 48 415 415 HOH HOH . H 4 HOH B 49 416 416 HOH HOH . H 4 HOH B 50 417 417 HOH HOH . H 4 HOH B 51 418 418 HOH HOH . H 4 HOH B 52 419 419 HOH HOH . H 4 HOH B 53 420 420 HOH HOH . H 4 HOH B 54 421 421 HOH HOH . H 4 HOH B 55 422 422 HOH HOH . H 4 HOH B 56 423 423 HOH HOH . H 4 HOH B 57 424 424 HOH HOH . H 4 HOH B 58 425 425 HOH HOH . H 4 HOH B 59 426 426 HOH HOH . H 4 HOH B 60 427 427 HOH HOH . H 4 HOH B 61 428 428 HOH HOH . H 4 HOH B 62 429 429 HOH HOH . H 4 HOH B 63 430 430 HOH HOH . H 4 HOH B 64 434 434 HOH HOH . H 4 HOH B 65 438 438 HOH HOH . H 4 HOH B 66 441 441 HOH HOH . H 4 HOH B 67 442 442 HOH HOH . H 4 HOH B 68 443 443 HOH HOH . H 4 HOH B 69 444 444 HOH HOH . H 4 HOH B 70 445 445 HOH HOH . H 4 HOH B 71 446 446 HOH HOH . H 4 HOH B 72 447 447 HOH HOH . H 4 HOH B 73 448 448 HOH HOH . H 4 HOH B 74 449 449 HOH HOH . H 4 HOH B 75 450 450 HOH HOH . H 4 HOH B 76 454 454 HOH HOH . H 4 HOH B 77 456 456 HOH HOH . H 4 HOH B 78 457 457 HOH HOH . H 4 HOH B 79 458 458 HOH HOH . H 4 HOH B 80 459 459 HOH HOH . H 4 HOH B 81 460 460 HOH HOH . H 4 HOH B 82 461 461 HOH HOH . H 4 HOH B 83 462 462 HOH HOH . H 4 HOH B 84 463 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UFP . . . E 2 43.974 34.062 24.729 1 19.54 ? N1 UFP 265 B 1 HETATM 2 C C2 UFP . . . E 2 43.04 34.834 25.362 1 17.11 ? C2 UFP 265 B 1 HETATM 3 N N3 UFP . . . E 2 41.996 35.4 24.633 1 15.1 ? N3 UFP 265 B 1 HETATM 4 C C4 UFP . . . E 2 41.816 35.272 23.275 1 17.43 ? C4 UFP 265 B 1 HETATM 5 C C5 UFP . . . E 2 43.077 34.798 22.364 1 18.12 ? C5 UFP 265 B 1 HETATM 6 C C6 UFP . . . E 2 43.826 33.678 23.262 1 17.46 ? C6 UFP 265 B 1 HETATM 7 O O2 UFP . . . E 2 43.068 35.107 26.57 1 16.29 ? O2 UFP 265 B 1 HETATM 8 O O4 UFP . . . E 2 40.795 35.715 22.725 1 20.38 ? O4 UFP 265 B 1 HETATM 9 F F5 UFP . . . E 2 42.791 34.464 21.126 1 19.72 ? F5 UFP 265 B 1 HETATM 10 C C1' UFP . . . E 2 45.158 33.511 25.374 1 19.33 ? C1' UFP 265 B 1 HETATM 11 C C2' UFP . . . E 2 44.867 32.427 26.372 1 19.51 ? C2' UFP 265 B 1 HETATM 12 C C3' UFP . . . E 2 46.201 31.711 26.315 1 18.85 ? C3' UFP 265 B 1 HETATM 13 C C4' UFP . . . E 2 46.642 31.782 24.896 1 19.94 ? C4' UFP 265 B 1 HETATM 14 O O3' UFP . . . E 2 47.039 32.335 27.203 1 18.75 ? O3' UFP 265 B 1 HETATM 15 O O4' UFP . . . E 2 45.995 33.036 24.329 1 20.41 ? O4' UFP 265 B 1 HETATM 16 C C5' UFP . . . E 2 46.205 30.612 23.958 1 18.5 ? C5' UFP 265 B 1 HETATM 17 O O5' UFP . . . E 2 46.955 29.421 24.379 1 16.4 ? O5' UFP 265 B 1 HETATM 18 P P UFP . . . E 2 46.198 28.026 24.599 1 15.73 ? P UFP 265 B 1 HETATM 19 O O1P UFP . . . E 2 45.286 28.244 25.696 1 15.31 ? O1P UFP 265 B 1 HETATM 20 O O2P UFP . . . E 2 45.458 27.868 23.306 1 13.17 ? O2P UFP 265 B 1 HETATM 21 O O3P UFP . . . E 2 47.254 26.977 24.963 1 17.54 ? O3P UFP 265 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #