data_1TLW
#
_model_server_result.job_id            EQfAMYGJlMx9DkJeuYYjSQ 
_model_server_result.datetime_utc      '2024-12-26 15:05:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tlw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    1TLW 
#
_exptl.entry_id    1TLW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.229 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            THYMIDINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1TLW 
_cell.length_a            149.653 
_cell.length_b            149.653 
_cell.length_c            119.939 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TLW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C10 H14 N2 O5' 
_chem_comp.formula_weight    242.229 
_chem_comp.id                THM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              THYMIDINE 
_chem_comp.type              'dna oh 5 prime terminus' 
_chem_comp.pdbx_synonyms     "DEOXYTHYMIDINE;2'-DEOXYTHYMIDINE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' THM sing 275 n n 
O5' HO5' THM sing 276 n n 
C5' C4' THM sing 277 n n 
C5' "H5'1" THM sing 278 n n 
C5' "H5'2" THM sing 279 n n 
C4' O4' THM sing 280 n n 
C4' C3' THM sing 281 n n 
C4' H4' THM sing 282 n n 
O4' C1' THM sing 283 n n 
C3' O3' THM sing 284 n n 
C3' C2' THM sing 285 n n 
C3' H3' THM sing 286 n n 
O3' HO3' THM sing 287 n n 
C2' C1' THM sing 288 n n 
C2' "H2'1" THM sing 289 n n 
C2' "H2'2" THM sing 290 n n 
C1' N1 THM sing 291 n n 
C1' H1' THM sing 292 n n 
N1 C2 THM sing 293 n n 
N1 C6 THM sing 294 n n 
C2 O2 THM doub 295 n n 
C2 N3 THM sing 296 n n 
N3 C4 THM sing 297 n n 
N3 HN3 THM sing 298 n n 
C4 O4 THM doub 299 n n 
C4 C5 THM sing 300 n n 
C5 C5M THM sing 301 n n 
C5 C6 THM doub 302 n n 
C5M HM51 THM sing 303 n n 
C5M HM52 THM sing 304 n n 
C5M HM53 THM sing 305 n n 
C6 H6 THM sing 306 n n 
#
_atom_sites.entry_id                     1TLW 
_atom_sites.fract_transf_matrix[1][1]    0.006682 
_atom_sites.fract_transf_matrix[1][2]    0.003858 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007716 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008338 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 THM A 1 798 798 THM THM . 
D 2 THM A 1 800 800 THM THM . 
E 2 THM B 1 799 799 THM THM . 
F 2 THM B 1 801 801 THM THM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' THM . . . F 2 -47.768 72.398 0.339 1 65.36 ? O5' THM 801 B 1 
HETATM 2 C C5' THM . . . F 2 -47.123 71.462 -0.536 1 61.37 ? C5' THM 801 B 1 
HETATM 3 C C4' THM . . . F 2 -46.692 70.266 0.27 1 60.41 ? C4' THM 801 B 1 
HETATM 4 O O4' THM . . . F 2 -45.736 70.725 1.276 1 60.33 ? O4' THM 801 B 1 
HETATM 5 C C3' THM . . . F 2 -47.859 69.666 1.055 1 58.9 ? C3' THM 801 B 1 
HETATM 6 O O3' THM . . . F 2 -47.63 68.26 1.236 1 60.13 ? O3' THM 801 B 1 
HETATM 7 C C2' THM . . . F 2 -47.778 70.4 2.389 1 58.66 ? C2' THM 801 B 1 
HETATM 8 C C1' THM . . . F 2 -46.272 70.534 2.589 1 57.42 ? C1' THM 801 B 1 
HETATM 9 N N1 THM . . . F 2 -45.819 71.671 3.444 1 53.95 ? N1 THM 801 B 1 
HETATM 10 C C2 THM . . . F 2 -45.201 71.378 4.682 1 52.86 ? C2 THM 801 B 1 
HETATM 11 O O2 THM . . . F 2 -44.979 70.227 5.077 1 52.59 ? O2 THM 801 B 1 
HETATM 12 N N3 THM . . . F 2 -44.823 72.493 5.427 1 51.16 ? N3 THM 801 B 1 
HETATM 13 C C4 THM . . . F 2 -44.971 73.832 5.057 1 52.26 ? C4 THM 801 B 1 
HETATM 14 O O4 THM . . . F 2 -44.605 74.733 5.827 1 51.17 ? O4 THM 801 B 1 
HETATM 15 C C5 THM . . . F 2 -45.587 74.061 3.739 1 52.73 ? C5 THM 801 B 1 
HETATM 16 C C5M THM . . . F 2 -45.733 75.476 3.252 1 51.45 ? C5M THM 801 B 1 
HETATM 17 C C6 THM . . . F 2 -45.99 72.982 3.02 1 53.14 ? C6 THM 801 B 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           17 
#