data_1TLZ # _model_server_result.job_id VSL3u3wBx3edO6vqmsYkPg _model_server_result.datetime_utc '2025-07-01 21:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tlz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 1TLZ # _exptl.entry_id 1TLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TLZ _cell.length_a 149.861 _cell.length_b 149.861 _cell.length_c 120.849 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H12 N2 O6' _chem_comp.formula_weight 244.201 _chem_comp.id URI _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URI sing 345 n n N1 C6 URI sing 346 n n N1 C1' URI sing 347 n n C2 N3 URI sing 348 n n C2 O2 URI doub 349 n n N3 C4 URI sing 350 n n N3 H3 URI sing 351 n n C4 C5 URI sing 352 n n C4 O4 URI doub 353 n n C5 C6 URI doub 354 n n C5 H5 URI sing 355 n n C6 H6 URI sing 356 n n C1' C2' URI sing 357 n n C1' O4' URI sing 358 n n C1' H1' URI sing 359 n n C2' C3' URI sing 360 n n C2' O2' URI sing 361 n n C2' H2' URI sing 362 n n C3' C4' URI sing 363 n n C3' O3' URI sing 364 n n C3' H3' URI sing 365 n n C4' O4' URI sing 366 n n C4' C5' URI sing 367 n n C4' H4' URI sing 368 n n O2' HO2' URI sing 369 n n O3' HO3' URI sing 370 n n C5' O5' URI sing 371 n n C5' "H5'1" URI sing 372 n n C5' "H5'2" URI sing 373 n n O5' HO5' URI sing 374 n n # _atom_sites.entry_id 1TLZ _atom_sites.fract_transf_matrix[1][1] 0.006673 _atom_sites.fract_transf_matrix[1][2] 0.003853 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008275 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 URI A 1 800 800 URI URI . D 2 URI B 1 801 801 URI URI . E 3 HOH A 1 801 276 HOH HOH . E 3 HOH A 2 802 277 HOH HOH . E 3 HOH A 3 803 279 HOH HOH . E 3 HOH A 4 804 280 HOH HOH . E 3 HOH A 5 805 282 HOH HOH . E 3 HOH A 6 806 283 HOH HOH . E 3 HOH A 7 807 284 HOH HOH . E 3 HOH A 8 808 285 HOH HOH . E 3 HOH A 9 809 286 HOH HOH . E 3 HOH A 10 810 287 HOH HOH . E 3 HOH A 11 811 288 HOH HOH . E 3 HOH A 12 812 289 HOH HOH . E 3 HOH A 13 813 290 HOH HOH . F 3 HOH B 1 802 278 HOH HOH . F 3 HOH B 2 803 281 HOH HOH . F 3 HOH B 3 804 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URI . . . D 2 -46.27 62.269 2.831 1 42.95 ? N1 URI 801 B 1 HETATM 2 C C2 URI . . . D 2 -45.835 61.229 3.649 1 40.92 ? C2 URI 801 B 1 HETATM 3 N N3 URI . . . D 2 -45.305 61.607 4.871 1 39.28 ? N3 URI 801 B 1 HETATM 4 C C4 URI . . . D 2 -45.175 62.924 5.319 1 40.94 ? C4 URI 801 B 1 HETATM 5 C C5 URI . . . D 2 -45.643 63.945 4.392 1 41.42 ? C5 URI 801 B 1 HETATM 6 C C6 URI . . . D 2 -46.166 63.583 3.205 1 41.38 ? C6 URI 801 B 1 HETATM 7 O O2 URI . . . D 2 -45.922 60.054 3.292 1 40.47 ? O2 URI 801 B 1 HETATM 8 O O4 URI . . . D 2 -44.74 63.142 6.451 1 43.03 ? O4 URI 801 B 1 HETATM 9 C C1' URI . . . D 2 -46.855 61.87 1.559 1 46.18 ? C1' URI 801 B 1 HETATM 10 C C2' URI . . . D 2 -48.351 61.75 1.813 1 47.99 ? C2' URI 801 B 1 HETATM 11 C C3' URI . . . D 2 -48.746 63.22 1.692 1 48.55 ? C3' URI 801 B 1 HETATM 12 C C4' URI . . . D 2 -47.991 63.62 0.42 1 49.37 ? C4' URI 801 B 1 HETATM 13 O O2' URI . . . D 2 -48.878 60.994 0.709 1 52.71 ? O2' URI 801 B 1 HETATM 14 O O3' URI . . . D 2 -50.138 63.372 1.443 1 48.74 ? O3' URI 801 B 1 HETATM 15 O O4' URI . . . D 2 -46.691 62.949 0.614 1 50.71 ? O4' URI 801 B 1 HETATM 16 C C5' URI . . . D 2 -47.762 65.107 0.369 1 49.56 ? C5' URI 801 B 1 HETATM 17 O O5' URI . . . D 2 -47.348 65.553 1.683 1 50.46 ? O5' URI 801 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #