data_1TMT # _model_server_result.job_id NFncsks9rhoSNyqQNGvzig _model_server_result.datetime_utc '2024-11-19 15:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 1TMT # _exptl.entry_id 1TMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TMT _cell.length_a 80.5 _cell.length_b 107.1 _cell.length_c 45.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 E C1 NAG . J NAG 301 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale2 C C DPN 1 I DPN 1 1_555 C N PRO 2 I PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 260 n n C1 O1 NAG sing 261 n n C1 O5 NAG sing 262 n n C1 H1 NAG sing 263 n n C2 C3 NAG sing 264 n n C2 N2 NAG sing 265 n n C2 H2 NAG sing 266 n n C3 C4 NAG sing 267 n n C3 O3 NAG sing 268 n n C3 H3 NAG sing 269 n n C4 C5 NAG sing 270 n n C4 O4 NAG sing 271 n n C4 H4 NAG sing 272 n n C5 C6 NAG sing 273 n n C5 O5 NAG sing 274 n n C5 H5 NAG sing 275 n n C6 O6 NAG sing 276 n n C6 H61 NAG sing 277 n n C6 H62 NAG sing 278 n n C7 C8 NAG sing 279 n n C7 N2 NAG sing 280 n n C7 O7 NAG doub 281 n n C8 H81 NAG sing 282 n n C8 H82 NAG sing 283 n n C8 H83 NAG sing 284 n n N2 HN2 NAG sing 285 n n O1 HO1 NAG sing 286 n n O3 HO3 NAG sing 287 n n O4 HO4 NAG sing 288 n n O6 HO6 NAG sing 289 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1TMT _atom_sites.fract_transf_matrix[1][1] 0.012422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG J 1 301 250 NAG NAG . F 6 HOH L 1 101 32 HOH HOH . F 6 HOH L 2 102 44 HOH HOH . F 6 HOH L 3 103 53 HOH HOH . F 6 HOH L 4 104 65 HOH HOH . F 6 HOH L 5 105 68 HOH HOH . F 6 HOH L 6 106 84 HOH HOH . F 6 HOH L 7 107 101 HOH HOH . F 6 HOH L 8 108 107 HOH HOH . F 6 HOH L 9 109 111 HOH HOH . G 6 HOH H 1 401 1 HOH HOH . G 6 HOH H 2 402 2 HOH HOH . G 6 HOH H 3 403 3 HOH HOH . G 6 HOH H 4 404 4 HOH HOH . G 6 HOH H 5 405 5 HOH HOH . G 6 HOH H 6 406 6 HOH HOH . G 6 HOH H 7 407 7 HOH HOH . G 6 HOH H 8 408 8 HOH HOH . G 6 HOH H 9 409 9 HOH HOH . G 6 HOH H 10 410 10 HOH HOH . G 6 HOH H 11 411 11 HOH HOH . G 6 HOH H 12 412 12 HOH HOH . G 6 HOH H 13 413 13 HOH HOH . G 6 HOH H 14 414 14 HOH HOH . G 6 HOH H 15 415 15 HOH HOH . G 6 HOH H 16 416 16 HOH HOH . G 6 HOH H 17 417 17 HOH HOH . G 6 HOH H 18 418 18 HOH HOH . G 6 HOH H 19 419 19 HOH HOH . G 6 HOH H 20 420 20 HOH HOH . G 6 HOH H 21 421 21 HOH HOH . G 6 HOH H 22 422 22 HOH HOH . G 6 HOH H 23 423 23 HOH HOH . G 6 HOH H 24 424 24 HOH HOH . G 6 HOH H 25 425 25 HOH HOH . G 6 HOH H 26 426 26 HOH HOH . G 6 HOH H 27 427 27 HOH HOH . G 6 HOH H 28 428 28 HOH HOH . G 6 HOH H 29 429 29 HOH HOH . G 6 HOH H 30 430 30 HOH HOH . G 6 HOH H 31 431 31 HOH HOH . G 6 HOH H 32 432 33 HOH HOH . G 6 HOH H 33 433 34 HOH HOH . G 6 HOH H 34 434 35 HOH HOH . G 6 HOH H 35 435 36 HOH HOH . G 6 HOH H 36 436 37 HOH HOH . G 6 HOH H 37 437 38 HOH HOH . G 6 HOH H 38 438 39 HOH HOH . G 6 HOH H 39 439 40 HOH HOH . G 6 HOH H 40 440 42 HOH HOH . G 6 HOH H 41 441 43 HOH HOH . G 6 HOH H 42 442 45 HOH HOH . G 6 HOH H 43 443 46 HOH HOH . G 6 HOH H 44 444 47 HOH HOH . G 6 HOH H 45 445 48 HOH HOH . G 6 HOH H 46 446 49 HOH HOH . G 6 HOH H 47 447 50 HOH HOH . G 6 HOH H 48 448 51 HOH HOH . G 6 HOH H 49 449 52 HOH HOH . G 6 HOH H 50 450 54 HOH HOH . G 6 HOH H 51 451 55 HOH HOH . G 6 HOH H 52 452 56 HOH HOH . G 6 HOH H 53 453 57 HOH HOH . G 6 HOH H 54 454 58 HOH HOH . G 6 HOH H 55 455 59 HOH HOH . G 6 HOH H 56 456 60 HOH HOH . G 6 HOH H 57 457 62 HOH HOH . G 6 HOH H 58 458 63 HOH HOH . G 6 HOH H 59 459 64 HOH HOH . G 6 HOH H 60 460 66 HOH HOH . G 6 HOH H 61 461 69 HOH HOH . G 6 HOH H 62 462 70 HOH HOH . G 6 HOH H 63 463 71 HOH HOH . G 6 HOH H 64 464 72 HOH HOH . G 6 HOH H 65 465 73 HOH HOH . G 6 HOH H 66 466 74 HOH HOH . G 6 HOH H 67 467 75 HOH HOH . G 6 HOH H 68 468 76 HOH HOH . G 6 HOH H 69 469 77 HOH HOH . G 6 HOH H 70 470 78 HOH HOH . G 6 HOH H 71 471 79 HOH HOH . G 6 HOH H 72 472 80 HOH HOH . G 6 HOH H 73 473 81 HOH HOH . G 6 HOH H 74 474 82 HOH HOH . G 6 HOH H 75 475 83 HOH HOH . G 6 HOH H 76 476 85 HOH HOH . G 6 HOH H 77 477 87 HOH HOH . G 6 HOH H 78 478 88 HOH HOH . G 6 HOH H 79 479 89 HOH HOH . G 6 HOH H 80 480 90 HOH HOH . G 6 HOH H 81 481 91 HOH HOH . G 6 HOH H 82 482 92 HOH HOH . G 6 HOH H 83 483 93 HOH HOH . G 6 HOH H 84 484 94 HOH HOH . G 6 HOH H 85 485 95 HOH HOH . G 6 HOH H 86 486 96 HOH HOH . G 6 HOH H 87 487 97 HOH HOH . G 6 HOH H 88 488 99 HOH HOH . G 6 HOH H 89 489 100 HOH HOH . G 6 HOH H 90 490 102 HOH HOH . G 6 HOH H 91 491 103 HOH HOH . G 6 HOH H 92 492 104 HOH HOH . G 6 HOH H 93 493 105 HOH HOH . G 6 HOH H 94 494 106 HOH HOH . G 6 HOH H 95 495 108 HOH HOH . G 6 HOH H 96 496 109 HOH HOH . G 6 HOH H 97 497 110 HOH HOH . H 6 HOH I 1 101 41 HOH HOH . H 6 HOH I 2 102 86 HOH HOH . H 6 HOH I 3 103 98 HOH HOH . I 6 HOH J 1 101 61 HOH HOH . I 6 HOH J 2 102 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 86.474 23.692 53.68 1 32.52 ? C1 NAG 301 J 1 HETATM 2 C C2 NAG . . . E 5 87.733 23.757 54.466 1 30.17 ? C2 NAG 301 J 1 HETATM 3 C C3 NAG . . . E 5 88.524 22.524 54.389 1 76.19 ? C3 NAG 301 J 1 HETATM 4 C C4 NAG . . . E 5 87.685 21.362 54.826 1 40.98 ? C4 NAG 301 J 1 HETATM 5 C C5 NAG . . . E 5 86.417 21.349 54.004 1 39.29 ? C5 NAG 301 J 1 HETATM 6 C C6 NAG . . . E 5 85.523 20.239 54.521 1 40.25 ? C6 NAG 301 J 1 HETATM 7 C C7 NAG . . . E 5 88.541 25.973 54.522 1 20.84 ? C7 NAG 301 J 1 HETATM 8 C C8 NAG . . . E 5 89.652 26.944 54.121 1 69.39 ? C8 NAG 301 J 1 HETATM 9 N N2 NAG . . . E 5 88.703 24.746 54.106 1 32.35 ? N2 NAG 301 J 1 HETATM 10 O O3 NAG . . . E 5 89.568 22.736 55.314 1 62.09 ? O3 NAG 301 J 1 HETATM 11 O O4 NAG . . . E 5 88.389 20.153 54.585 1 56.05 ? O4 NAG 301 J 1 HETATM 12 O O5 NAG . . . E 5 85.716 22.583 54.166 1 31.47 ? O5 NAG 301 J 1 HETATM 13 O O6 NAG . . . E 5 86.273 19.038 54.547 1 99.9 ? O6 NAG 301 J 1 HETATM 14 O O7 NAG . . . E 5 87.538 26.316 55.17 1 38.54 ? O7 NAG 301 J 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #