data_1TMU # _model_server_result.job_id cOaSqbRpPo2FFgUcV_dwAg _model_server_result.datetime_utc '2024-11-22 00:22:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tmu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":250}' # _entry.id 1TMU # _exptl.entry_id 1TMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TMU _cell.length_a 80.9 _cell.length_b 107.5 _cell.length_c 45.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 D C3 0G6 . H 0G6 1 1_555 B NE2 HIS 43 H HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale2 D C2 0G6 . H 0G6 1 1_555 B OG SER 205 H SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale3 B ND2 ASN 53 H ASN 60 1_555 E C1 NAG . H NAG 250 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale4 C C GLU 8 J GLU 62 1_555 C N TYS 9 J TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale5 C C TYS 9 J TYS 63 1_555 C N LEU 10 J LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 303 n n C1 O1 NAG sing 304 n n C1 O5 NAG sing 305 n n C1 H1 NAG sing 306 n n C2 C3 NAG sing 307 n n C2 N2 NAG sing 308 n n C2 H2 NAG sing 309 n n C3 C4 NAG sing 310 n n C3 O3 NAG sing 311 n n C3 H3 NAG sing 312 n n C4 C5 NAG sing 313 n n C4 O4 NAG sing 314 n n C4 H4 NAG sing 315 n n C5 C6 NAG sing 316 n n C5 O5 NAG sing 317 n n C5 H5 NAG sing 318 n n C6 O6 NAG sing 319 n n C6 H61 NAG sing 320 n n C6 H62 NAG sing 321 n n C7 C8 NAG sing 322 n n C7 N2 NAG sing 323 n n C7 O7 NAG doub 324 n n C8 H81 NAG sing 325 n n C8 H82 NAG sing 326 n n C8 H83 NAG sing 327 n n N2 HN2 NAG sing 328 n n O1 HO1 NAG sing 329 n n O3 HO3 NAG sing 330 n n O4 HO4 NAG sing 331 n n O6 HO6 NAG sing 332 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1TMU _atom_sites.fract_transf_matrix[1][1] 0.012361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G6 H 1 1 1 0G6 DPN . E 5 NAG H 1 250 250 NAG NAG . F 6 HOH L 1 15 15 HOH HOH . F 6 HOH L 2 34 34 HOH HOH . F 6 HOH L 3 55 55 HOH HOH . G 6 HOH H 1 251 251 HOH HOH . G 6 HOH H 2 252 252 HOH HOH . G 6 HOH H 3 253 253 HOH HOH . G 6 HOH H 4 254 254 HOH HOH . G 6 HOH H 5 255 255 HOH HOH . G 6 HOH H 6 256 256 HOH HOH . G 6 HOH H 7 257 257 HOH HOH . G 6 HOH H 8 258 258 HOH HOH . G 6 HOH H 9 259 259 HOH HOH . G 6 HOH H 10 260 260 HOH HOH . G 6 HOH H 11 261 261 HOH HOH . G 6 HOH H 12 262 262 HOH HOH . G 6 HOH H 13 263 263 HOH HOH . G 6 HOH H 14 264 264 HOH HOH . G 6 HOH H 15 265 265 HOH HOH . G 6 HOH H 16 266 266 HOH HOH . G 6 HOH H 17 267 267 HOH HOH . G 6 HOH H 18 268 268 HOH HOH . G 6 HOH H 19 269 269 HOH HOH . G 6 HOH H 20 270 270 HOH HOH . G 6 HOH H 21 271 271 HOH HOH . G 6 HOH H 22 272 272 HOH HOH . G 6 HOH H 23 273 273 HOH HOH . G 6 HOH H 24 274 274 HOH HOH . G 6 HOH H 25 275 275 HOH HOH . G 6 HOH H 26 276 276 HOH HOH . G 6 HOH H 27 277 277 HOH HOH . G 6 HOH H 28 278 278 HOH HOH . G 6 HOH H 29 279 279 HOH HOH . G 6 HOH H 30 280 280 HOH HOH . G 6 HOH H 31 281 281 HOH HOH . G 6 HOH H 32 282 282 HOH HOH . G 6 HOH H 33 283 283 HOH HOH . G 6 HOH H 34 284 284 HOH HOH . G 6 HOH H 35 285 285 HOH HOH . G 6 HOH H 36 286 286 HOH HOH . G 6 HOH H 37 287 287 HOH HOH . G 6 HOH H 38 288 288 HOH HOH . G 6 HOH H 39 289 289 HOH HOH . G 6 HOH H 40 290 290 HOH HOH . G 6 HOH H 41 291 291 HOH HOH . G 6 HOH H 42 292 292 HOH HOH . G 6 HOH H 43 293 293 HOH HOH . G 6 HOH H 44 294 294 HOH HOH . G 6 HOH H 45 295 295 HOH HOH . G 6 HOH H 46 296 296 HOH HOH . G 6 HOH H 47 297 297 HOH HOH . G 6 HOH H 48 298 298 HOH HOH . G 6 HOH H 49 299 299 HOH HOH . G 6 HOH H 50 300 300 HOH HOH . G 6 HOH H 51 301 301 HOH HOH . G 6 HOH H 52 302 302 HOH HOH . G 6 HOH H 53 303 303 HOH HOH . G 6 HOH H 54 304 304 HOH HOH . G 6 HOH H 55 305 305 HOH HOH . G 6 HOH H 56 306 306 HOH HOH . G 6 HOH H 57 307 307 HOH HOH . G 6 HOH H 58 308 308 HOH HOH . G 6 HOH H 59 309 309 HOH HOH . G 6 HOH H 60 310 310 HOH HOH . G 6 HOH H 61 311 311 HOH HOH . G 6 HOH H 62 312 312 HOH HOH . G 6 HOH H 63 313 313 HOH HOH . G 6 HOH H 64 314 314 HOH HOH . G 6 HOH H 65 315 315 HOH HOH . G 6 HOH H 66 316 316 HOH HOH . G 6 HOH H 67 317 317 HOH HOH . G 6 HOH H 68 318 318 HOH HOH . G 6 HOH H 69 319 319 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 86.645 23.973 53.738 1 27.85 ? C1 NAG 250 H 1 HETATM 2 C C2 NAG . . . E 5 87.815 24.043 54.649 1 27.85 ? C2 NAG 250 H 1 HETATM 3 C C3 NAG . . . E 5 88.604 22.721 54.649 1 27.85 ? C3 NAG 250 H 1 HETATM 4 C C4 NAG . . . E 5 87.725 21.545 55.076 1 27.85 ? C4 NAG 250 H 1 HETATM 5 C C5 NAG . . . E 5 86.553 21.565 54.129 1 27.85 ? C5 NAG 250 H 1 HETATM 6 C C6 NAG . . . E 5 85.638 20.453 54.594 1 27.85 ? C6 NAG 250 H 1 HETATM 7 C C7 NAG . . . E 5 88.675 26.406 54.547 1 27.85 ? C7 NAG 250 H 1 HETATM 8 C C8 NAG . . . E 5 89.814 27.194 53.907 1 27.85 ? C8 NAG 250 H 1 HETATM 9 N N2 NAG . . . E 5 88.708 25.099 54.224 1 27.85 ? N2 NAG 250 H 1 HETATM 10 O O3 NAG . . . E 5 89.669 22.869 55.562 1 27.85 ? O3 NAG 250 H 1 HETATM 11 O O4 NAG . . . E 5 88.374 20.252 55.085 1 27.85 ? O4 NAG 250 H 1 HETATM 12 O O5 NAG . . . E 5 85.842 22.846 54.146 1 27.85 ? O5 NAG 250 H 1 HETATM 13 O O6 NAG . . . E 5 84.3 20.86 54.365 1 27.85 ? O6 NAG 250 H 1 HETATM 14 O O7 NAG . . . E 5 87.846 26.96 55.289 1 27.85 ? O7 NAG 250 H 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #