data_1TOB # _model_server_result.job_id TwAh-rp7TxFm7II8fmzZnw _model_server_result.datetime_utc '2025-09-04 21:09:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":28}' # _entry.id 1TOB # _exptl.entry_id 1TOB _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 180.179 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 3-ammonio-3-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TOB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 TOA . A TOA 28 1_555 D O6 TOB . A TOB 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale2 D C4 TOB . A TOB 29 1_555 C O1 TOC . A TOC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 3 1_555 A N1 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 3 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 3 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 A 4 A A 4 1_555 A N3 U 24 A U 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 A 4 A A 4 1_555 A O4 U 24 A U 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 C 5 A C 5 1_555 A N1 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 C 5 A C 5 1_555 A O6 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 C 5 A C 5 1_555 A N2 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 G 6 A G 6 1_555 A N3 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 G 6 A G 6 1_555 A O2 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 G 6 A G 6 1_555 A N4 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 A 7 A A 7 1_555 A N3 U 21 A U 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 A 7 A A 7 1_555 A O4 U 21 A U 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 G 8 A G 8 1_555 A N3 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 G 8 A G 8 1_555 A O2 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 G 8 A G 8 1_555 A N4 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 G 9 A G 9 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 G 9 A G 9 1_555 A O2 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 G 9 A G 9 1_555 A N4 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 U 10 A U 10 1_555 A N1 A 17 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 U 10 A U 10 1_555 A N6 A 17 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog28 A N3 U 11 A U 11 1_555 A O4 U 16 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog29 A O2 U 11 A U 11 1_555 A N3 U 16 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H14 N O5 1' _chem_comp.formula_weight 180.179 _chem_comp.id TOA _chem_comp.mon_nstd_flag . _chem_comp.name 3-ammonio-3-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms '3-DEOXY-3-AMINO GLUCOSE;3-ammonio-3-deoxy-alpha-D-glucose;3-ammonio-3-deoxy-D-glucose;3-ammonio-3-deoxy-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TOA sing 116 n n C1 O1 TOA sing 117 n n C1 O5 TOA sing 118 n n C1 H1 TOA sing 119 n n C2 C3 TOA sing 120 n n C2 O2 TOA sing 121 n n C2 H2 TOA sing 122 n n C3 C4 TOA sing 123 n n C3 N3 TOA sing 124 n n C3 H3 TOA sing 125 n n C4 C5 TOA sing 126 n n C4 O4 TOA sing 127 n n C4 H4 TOA sing 128 n n C5 C6 TOA sing 129 n n C5 O5 TOA sing 130 n n C5 H5 TOA sing 131 n n C6 O6 TOA sing 132 n n C6 H61 TOA sing 133 n n C6 H62 TOA sing 134 n n O1 HO1 TOA sing 135 n n O2 HO2 TOA sing 136 n n N3 HN31 TOA sing 137 n n N3 HN32 TOA sing 138 n n N3 HN33 TOA sing 139 n n O4 HO4 TOA sing 140 n n O6 HO6 TOA sing 141 n n # _pdbx_chem_comp_identifier.comp_id TOA _pdbx_chem_comp_identifier.identifier a-D-Glcp3N _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1TOB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOA A 1 28 28 TOA TOA . C 3 TOC A 1 30 30 TOC TOC . D 4 TOB A 1 29 29 TOB TOB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOA . . . B 2 -2.301 5.445 2.953 1 0 ? C1 TOA 28 A 1 HETATM 2 C C2 TOA . . . B 2 -1.487 4.655 1.931 1 0 ? C2 TOA 28 A 1 HETATM 3 C C3 TOA . . . B 2 -1.384 3.201 2.371 1 0 ? C3 TOA 28 A 1 HETATM 4 C C4 TOA . . . B 2 -0.797 3.138 3.776 1 0 ? C4 TOA 28 A 1 HETATM 5 C C5 TOA . . . B 2 -1.639 3.983 4.728 1 0 ? C5 TOA 28 A 1 HETATM 6 C C6 TOA . . . B 2 -1.061 4.023 6.129 1 0 ? C6 TOA 28 A 1 HETATM 7 O O2 TOA . . . B 2 -2.115 4.727 0.659 1 0 ? O2 TOA 28 A 1 HETATM 8 N N3 TOA . . . B 2 -0.594 2.406 1.406 1 0 ? N3 TOA 28 A 1 HETATM 9 O O4 TOA . . . B 2 -0.761 1.789 4.222 1 0 ? O4 TOA 28 A 1 HETATM 10 O O5 TOA . . . B 2 -1.706 5.345 4.253 1 0 ? O5 TOA 28 A 1 HETATM 11 O O6 TOA . . . B 2 0.259 4.548 6.131 1 0 ? O6 TOA 28 A 1 HETATM 12 H H1 TOA . . . B 2 -2.387 6.465 2.583 1 0 ? H1 TOA 28 A 1 HETATM 13 H H2 TOA . . . B 2 -0.48 5.094 1.881 1 0 ? H2 TOA 28 A 1 HETATM 14 H H3 TOA . . . B 2 -2.405 2.807 2.403 1 0 ? H3 TOA 28 A 1 HETATM 15 H H4 TOA . . . B 2 0.196 3.59 3.802 1 0 ? H4 TOA 28 A 1 HETATM 16 H H5 TOA . . . B 2 -2.662 3.583 4.773 1 0 ? H5 TOA 28 A 1 HETATM 17 H H61 TOA . . . B 2 -1.706 4.66 6.72 1 0 ? H61 TOA 28 A 1 HETATM 18 H H62 TOA . . . B 2 -1.054 3.014 6.564 1 0 ? H62 TOA 28 A 1 HETATM 19 H HO2 TOA . . . B 2 -2.222 5.782 0.362 1 0 ? HO2 TOA 28 A 1 HETATM 20 H HN31 TOA . . . B 2 -1.226 1.79 0.861 1 0 ? HN31 TOA 28 A 1 HETATM 21 H HN32 TOA . . . B 2 -0.102 3.028 0.734 1 0 ? HN32 TOA 28 A 1 HETATM 22 H HN33 TOA . . . B 2 0.103 1.819 1.906 1 0 ? HN33 TOA 28 A 1 HETATM 23 H HO4 TOA . . . B 2 -0.285 1.712 5.21 1 0 ? HO4 TOA 28 A 1 HETATM 24 H HO6 TOA . . . B 2 0.635 4.579 7.165 1 0 ? HO6 TOA 28 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 2159 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #