data_1TOB # _model_server_result.job_id DBLdVzTIyJg3UntoOJIrWA _model_server_result.datetime_utc '2025-09-09 12:59:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tob # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":29}' # _entry.id 1TOB # _exptl.entry_id 1TOB _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 148.203 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-DIAMINO-5,6-DIHYDROXYCYCLOHEXANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TOB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TOB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 TOA . A TOA 28 1_555 D O6 TOB . A TOB 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale2 D C4 TOB . A TOB 29 1_555 C O1 TOC . A TOC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 3 1_555 A N1 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 3 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 3 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 A 4 A A 4 1_555 A N3 U 24 A U 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 A 4 A A 4 1_555 A O4 U 24 A U 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 C 5 A C 5 1_555 A N1 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 C 5 A C 5 1_555 A O6 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 C 5 A C 5 1_555 A N2 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 G 6 A G 6 1_555 A N3 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 G 6 A G 6 1_555 A O2 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 G 6 A G 6 1_555 A N4 C 22 A C 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 A 7 A A 7 1_555 A N3 U 21 A U 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 A 7 A A 7 1_555 A O4 U 21 A U 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 G 8 A G 8 1_555 A N3 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 G 8 A G 8 1_555 A O2 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 G 8 A G 8 1_555 A N4 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 G 9 A G 9 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 G 9 A G 9 1_555 A O2 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 G 9 A G 9 1_555 A N4 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 U 10 A U 10 1_555 A N1 A 17 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 U 10 A U 10 1_555 A N6 A 17 A A 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog28 A N3 U 11 A U 11 1_555 A O4 U 16 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog29 A O2 U 11 A U 11 1_555 A N3 U 16 A U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H16 N2 O2 2' _chem_comp.formula_weight 148.203 _chem_comp.id TOB _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-DIAMINO-5,6-DIHYDROXYCYCLOHEXANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TOB sing 142 n n C1 C6 TOB sing 143 n n C1 N1 TOB sing 144 n n C1 H1 TOB sing 145 n n C2 C3 TOB sing 146 n n C2 H21 TOB sing 147 n n C2 H22 TOB sing 148 n n C3 C4 TOB sing 149 n n C3 N3 TOB sing 150 n n C3 H3 TOB sing 151 n n C4 C5 TOB sing 152 n n C4 H41 TOB sing 153 n n C4 H42 TOB sing 154 n n C5 C6 TOB sing 155 n n C5 O5 TOB sing 156 n n C5 H5 TOB sing 157 n n C6 O6 TOB sing 158 n n C6 H6 TOB sing 159 n n N1 HN11 TOB sing 160 n n N1 HN12 TOB sing 161 n n N1 HN13 TOB sing 162 n n N3 HN31 TOB sing 163 n n N3 HN32 TOB sing 164 n n N3 HN33 TOB sing 165 n n O5 HO5 TOB sing 166 n n O6 HO6 TOB sing 167 n n # _atom_sites.entry_id 1TOB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOA A 1 28 28 TOA TOA . C 3 TOC A 1 30 30 TOC TOC . D 4 TOB A 1 29 29 TOB TOB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOB . . . D 4 -5.527 4.668 1.6 1 0 ? C1 TOB 29 A 1 HETATM 2 C C2 TOB . . . D 4 -6.554 5.426 0.77 1 0 ? C2 TOB 29 A 1 HETATM 3 C C3 TOB . . . D 4 -7.322 6.417 1.645 1 0 ? C3 TOB 29 A 1 HETATM 4 C C4 TOB . . . D 4 -6.348 7.412 2.272 1 0 ? C4 TOB 29 A 1 HETATM 5 C C5 TOB . . . D 4 -5.303 6.667 3.104 1 0 ? C5 TOB 29 A 1 HETATM 6 C C6 TOB . . . D 4 -4.559 5.657 2.231 1 0 ? C6 TOB 29 A 1 HETATM 7 N N1 TOB . . . D 4 -4.758 3.731 0.752 1 0 ? N1 TOB 29 A 1 HETATM 8 N N3 TOB . . . D 4 -8.377 7.088 0.842 1 0 ? N3 TOB 29 A 1 HETATM 9 O O5 TOB . . . D 4 -4.382 7.594 3.663 1 0 ? O5 TOB 29 A 1 HETATM 10 O O6 TOB . . . D 4 -3.589 4.948 3.023 1 0 ? O6 TOB 29 A 1 HETATM 11 H H1 TOB . . . D 4 -6.021 4.089 2.386 1 0 ? H1 TOB 29 A 1 HETATM 12 H H21 TOB . . . D 4 -5.93 5.983 0.049 1 0 ? H21 TOB 29 A 1 HETATM 13 H H22 TOB . . . D 4 -7.242 4.721 0.282 1 0 ? H22 TOB 29 A 1 HETATM 14 H H3 TOB . . . D 4 -7.849 5.87 2.44 1 0 ? H3 TOB 29 A 1 HETATM 15 H H41 TOB . . . D 4 -5.84 7.935 1.455 1 0 ? H41 TOB 29 A 1 HETATM 16 H H5 TOB . . . D 4 -5.807 6.118 3.899 1 0 ? H5 TOB 29 A 1 HETATM 17 H H6 TOB . . . D 4 -4.068 6.214 1.419 1 0 ? H6 TOB 29 A 1 HETATM 18 H HN11 TOB . . . D 4 -5.313 2.864 0.633 1 0 ? HN11 TOB 29 A 1 HETATM 19 H HN12 TOB . . . D 4 -4.52 4.134 -0.175 1 0 ? HN12 TOB 29 A 1 HETATM 20 H HN13 TOB . . . D 4 -3.876 3.491 1.246 1 0 ? HN13 TOB 29 A 1 HETATM 21 H HN31 TOB . . . D 4 -8.01 7.355 -0.093 1 0 ? HN31 TOB 29 A 1 HETATM 22 H HN32 TOB . . . D 4 -9.17 6.421 0.738 1 0 ? HN32 TOB 29 A 1 HETATM 23 H HN33 TOB . . . D 4 -8.705 7.935 1.345 1 0 ? HN33 TOB 29 A 1 HETATM 24 H HO5 TOB . . . D 4 -3.632 7.074 4.276 1 0 ? HO5 TOB 29 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 2381 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #