data_1TOG # _model_server_result.job_id IdkNfWAuLrNEoJDjEXzrdg _model_server_result.datetime_utc '2024-11-27 13:30:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":410}' # _entry.id 1TOG # _exptl.entry_id 1TOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROCINNAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TOG _cell.length_a 151.378 _cell.length_b 151.378 _cell.length_c 79.724 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 245 A SER 257 1_555 A N LLP 246 A LLP 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C LLP 246 A LLP 258 1_555 A N ASN 247 A ASN 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 B C SER 245 B SER 257 1_555 B N LLP 246 B LLP 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C LLP 246 B LLP 258 1_555 B N ASN 247 B ASN 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C9 H10 O2' _chem_comp.formula_weight 150.174 _chem_comp.id HCI _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROCINNAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3PP;3-PHENYLPROPIONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HCI doub 129 n n C1 O2 HCI sing 130 n n C1 C2 HCI sing 131 n n O2 HO2 HCI sing 132 n n C2 C3 HCI sing 133 n n C2 H21 HCI sing 134 n n C2 H22 HCI sing 135 n n C3 C1' HCI sing 136 n n C3 H31 HCI sing 137 n n C3 H32 HCI sing 138 n n C1' C2' HCI doub 139 n y C1' C6' HCI sing 140 n y C2' C3' HCI sing 141 n y C2' H2' HCI sing 142 n n C3' C4' HCI doub 143 n y C3' H3' HCI sing 144 n n C4' C5' HCI sing 145 n y C4' H4' HCI sing 146 n n C5' C6' HCI doub 147 n y C5' H5' HCI sing 148 n n C6' H6' HCI sing 149 n n # _atom_sites.entry_id 1TOG _atom_sites.fract_transf_matrix[1][1] 0.006606 _atom_sites.fract_transf_matrix[1][2] 0.003814 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HCI A 1 410 201 HCI HCI . D 2 HCI B 1 410 202 HCI HCI . E 3 HOH A 1 411 3 HOH HOH . E 3 HOH A 2 412 4 HOH HOH . E 3 HOH A 3 413 6 HOH HOH . E 3 HOH A 4 414 10 HOH HOH . E 3 HOH A 5 415 15 HOH HOH . E 3 HOH A 6 416 17 HOH HOH . E 3 HOH A 7 417 21 HOH HOH . E 3 HOH A 8 418 22 HOH HOH . E 3 HOH A 9 419 23 HOH HOH . E 3 HOH A 10 420 24 HOH HOH . E 3 HOH A 11 421 26 HOH HOH . E 3 HOH A 12 422 30 HOH HOH . E 3 HOH A 13 423 32 HOH HOH . E 3 HOH A 14 424 33 HOH HOH . E 3 HOH A 15 425 34 HOH HOH . E 3 HOH A 16 426 36 HOH HOH . E 3 HOH A 17 427 38 HOH HOH . E 3 HOH A 18 428 39 HOH HOH . E 3 HOH A 19 429 40 HOH HOH . E 3 HOH A 20 430 41 HOH HOH . E 3 HOH A 21 431 46 HOH HOH . E 3 HOH A 22 432 49 HOH HOH . E 3 HOH A 23 433 51 HOH HOH . E 3 HOH A 24 434 52 HOH HOH . E 3 HOH A 25 435 53 HOH HOH . E 3 HOH A 26 436 54 HOH HOH . E 3 HOH A 27 437 55 HOH HOH . E 3 HOH A 28 438 56 HOH HOH . E 3 HOH A 29 439 58 HOH HOH . E 3 HOH A 30 440 64 HOH HOH . E 3 HOH A 31 441 66 HOH HOH . E 3 HOH A 32 442 68 HOH HOH . E 3 HOH A 33 443 69 HOH HOH . E 3 HOH A 34 444 70 HOH HOH . E 3 HOH A 35 445 73 HOH HOH . E 3 HOH A 36 446 74 HOH HOH . E 3 HOH A 37 447 76 HOH HOH . E 3 HOH A 38 448 78 HOH HOH . E 3 HOH A 39 449 81 HOH HOH . E 3 HOH A 40 450 82 HOH HOH . E 3 HOH A 41 451 86 HOH HOH . E 3 HOH A 42 452 88 HOH HOH . E 3 HOH A 43 453 90 HOH HOH . E 3 HOH A 44 454 93 HOH HOH . E 3 HOH A 45 455 94 HOH HOH . E 3 HOH A 46 456 100 HOH HOH . E 3 HOH A 47 457 101 HOH HOH . E 3 HOH A 48 458 104 HOH HOH . E 3 HOH A 49 459 108 HOH HOH . E 3 HOH A 50 460 110 HOH HOH . E 3 HOH A 51 461 111 HOH HOH . E 3 HOH A 52 462 115 HOH HOH . E 3 HOH A 53 463 117 HOH HOH . E 3 HOH A 54 464 121 HOH HOH . E 3 HOH A 55 465 122 HOH HOH . E 3 HOH A 56 466 124 HOH HOH . E 3 HOH A 57 467 125 HOH HOH . E 3 HOH A 58 468 127 HOH HOH . E 3 HOH A 59 469 128 HOH HOH . E 3 HOH A 60 470 131 HOH HOH . F 3 HOH B 1 411 1 HOH HOH . F 3 HOH B 2 412 2 HOH HOH . F 3 HOH B 3 413 5 HOH HOH . F 3 HOH B 4 414 7 HOH HOH . F 3 HOH B 5 415 8 HOH HOH . F 3 HOH B 6 416 9 HOH HOH . F 3 HOH B 7 417 11 HOH HOH . F 3 HOH B 8 418 12 HOH HOH . F 3 HOH B 9 419 13 HOH HOH . F 3 HOH B 10 420 14 HOH HOH . F 3 HOH B 11 421 16 HOH HOH . F 3 HOH B 12 422 18 HOH HOH . F 3 HOH B 13 423 19 HOH HOH . F 3 HOH B 14 424 20 HOH HOH . F 3 HOH B 15 425 25 HOH HOH . F 3 HOH B 16 426 27 HOH HOH . F 3 HOH B 17 427 28 HOH HOH . F 3 HOH B 18 428 29 HOH HOH . F 3 HOH B 19 429 31 HOH HOH . F 3 HOH B 20 430 35 HOH HOH . F 3 HOH B 21 431 37 HOH HOH . F 3 HOH B 22 432 42 HOH HOH . F 3 HOH B 23 433 43 HOH HOH . F 3 HOH B 24 434 44 HOH HOH . F 3 HOH B 25 435 45 HOH HOH . F 3 HOH B 26 436 47 HOH HOH . F 3 HOH B 27 437 48 HOH HOH . F 3 HOH B 28 438 50 HOH HOH . F 3 HOH B 29 439 57 HOH HOH . F 3 HOH B 30 440 59 HOH HOH . F 3 HOH B 31 441 60 HOH HOH . F 3 HOH B 32 442 61 HOH HOH . F 3 HOH B 33 443 62 HOH HOH . F 3 HOH B 34 444 63 HOH HOH . F 3 HOH B 35 445 65 HOH HOH . F 3 HOH B 36 446 67 HOH HOH . F 3 HOH B 37 447 71 HOH HOH . F 3 HOH B 38 448 72 HOH HOH . F 3 HOH B 39 449 75 HOH HOH . F 3 HOH B 40 450 77 HOH HOH . F 3 HOH B 41 451 79 HOH HOH . F 3 HOH B 42 452 80 HOH HOH . F 3 HOH B 43 453 83 HOH HOH . F 3 HOH B 44 454 84 HOH HOH . F 3 HOH B 45 455 85 HOH HOH . F 3 HOH B 46 456 87 HOH HOH . F 3 HOH B 47 457 89 HOH HOH . F 3 HOH B 48 458 91 HOH HOH . F 3 HOH B 49 459 92 HOH HOH . F 3 HOH B 50 460 95 HOH HOH . F 3 HOH B 51 461 96 HOH HOH . F 3 HOH B 52 462 97 HOH HOH . F 3 HOH B 53 463 98 HOH HOH . F 3 HOH B 54 464 99 HOH HOH . F 3 HOH B 55 465 102 HOH HOH . F 3 HOH B 56 466 103 HOH HOH . F 3 HOH B 57 467 105 HOH HOH . F 3 HOH B 58 468 106 HOH HOH . F 3 HOH B 59 469 107 HOH HOH . F 3 HOH B 60 470 109 HOH HOH . F 3 HOH B 61 471 112 HOH HOH . F 3 HOH B 62 472 113 HOH HOH . F 3 HOH B 63 473 114 HOH HOH . F 3 HOH B 64 474 116 HOH HOH . F 3 HOH B 65 475 118 HOH HOH . F 3 HOH B 66 476 119 HOH HOH . F 3 HOH B 67 477 120 HOH HOH . F 3 HOH B 68 478 123 HOH HOH . F 3 HOH B 69 479 126 HOH HOH . F 3 HOH B 70 480 129 HOH HOH . F 3 HOH B 71 481 130 HOH HOH . F 3 HOH B 72 482 132 HOH HOH . F 3 HOH B 73 483 133 HOH HOH . F 3 HOH B 74 484 134 HOH HOH . F 3 HOH B 75 485 135 HOH HOH . F 3 HOH B 76 486 136 HOH HOH . F 3 HOH B 77 487 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCI . . . C 2 47.563 92.453 -14.479 1 22.37 ? C1 HCI 410 A 1 HETATM 2 O O1 HCI . . . C 2 47.865 92.074 -15.619 1 22.97 ? O1 HCI 410 A 1 HETATM 3 O O2 HCI . . . C 2 46.317 92.879 -14.267 1 20.39 ? O2 HCI 410 A 1 HETATM 4 C C2 HCI . . . C 2 48.546 92.476 -13.311 1 21.43 ? C2 HCI 410 A 1 HETATM 5 C C3 HCI . . . C 2 49.28 91.15 -13.029 1 20.89 ? C3 HCI 410 A 1 HETATM 6 C C1' HCI . . . C 2 48.403 90.107 -12.343 1 22.75 ? C1' HCI 410 A 1 HETATM 7 C C2' HCI . . . C 2 48.542 89.848 -10.977 1 21.31 ? C2' HCI 410 A 1 HETATM 8 C C3' HCI . . . C 2 47.752 88.868 -10.37 1 24.13 ? C3' HCI 410 A 1 HETATM 9 C C4' HCI . . . C 2 46.806 88.136 -11.109 1 24.88 ? C4' HCI 410 A 1 HETATM 10 C C5' HCI . . . C 2 46.641 88.403 -12.477 1 26.32 ? C5' HCI 410 A 1 HETATM 11 C C6' HCI . . . C 2 47.456 89.381 -13.078 1 23.66 ? C6' HCI 410 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #