data_1TP2
#
_model_server_result.job_id            B_GfoJfuUZ2GXV4NS1CZaw 
_model_server_result.datetime_utc      '2024-10-14 10:13:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tp2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    1TP2 
#
_exptl.entry_id    1TP2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              214.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-TRIDECANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1TP2 
_cell.length_a            45.866 
_cell.length_b            69.071 
_cell.length_c            75.646 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TP2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 121 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 121 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C13 H26 O2' 
_chem_comp.formula_weight    214.344 
_chem_comp.id                TDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-TRIDECANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C21 TDA sing 301 n n 
O21 H21 TDA sing 302 n n 
O22 C21 TDA doub 303 n n 
C21 C22 TDA sing 304 n n 
C22 C23 TDA sing 305 n n 
C22 H222 TDA sing 306 n n 
C22 H221 TDA sing 307 n n 
C23 C24 TDA sing 308 n n 
C23 H232 TDA sing 309 n n 
C23 H231 TDA sing 310 n n 
C24 C25 TDA sing 311 n n 
C24 H242 TDA sing 312 n n 
C24 H241 TDA sing 313 n n 
C25 C26 TDA sing 314 n n 
C25 H252 TDA sing 315 n n 
C25 H251 TDA sing 316 n n 
C26 C27 TDA sing 317 n n 
C26 H262 TDA sing 318 n n 
C26 H261 TDA sing 319 n n 
C27 C28 TDA sing 320 n n 
C27 H272 TDA sing 321 n n 
C27 H271 TDA sing 322 n n 
C28 C29 TDA sing 323 n n 
C28 H282 TDA sing 324 n n 
C28 H281 TDA sing 325 n n 
C29 C30 TDA sing 326 n n 
C29 H292 TDA sing 327 n n 
C29 H291 TDA sing 328 n n 
C30 C31 TDA sing 329 n n 
C30 H302 TDA sing 330 n n 
C30 H301 TDA sing 331 n n 
C31 C32 TDA sing 332 n n 
C31 H312 TDA sing 333 n n 
C31 H311 TDA sing 334 n n 
C32 C33 TDA sing 335 n n 
C32 H322 TDA sing 336 n n 
C32 H321 TDA sing 337 n n 
C33 H333 TDA sing 338 n n 
C33 H332 TDA sing 339 n n 
C33 H331 TDA sing 340 n n 
#
_atom_sites.entry_id                     1TP2 
_atom_sites.fract_transf_matrix[1][1]    0.021803 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 301 301 SO4 SO4 . 
D 3 TDA A 1 201 201 TDA TDA . 
E 4 ACY A 1 401 401 ACY ACY . 
F 3 TDA B 1 202 202 TDA TDA . 
G 5 HOH A 1 402 1 HOH HOH . 
G 5 HOH A 2 403 2 HOH HOH . 
G 5 HOH A 3 404 4 HOH HOH . 
G 5 HOH A 4 405 6 HOH HOH . 
G 5 HOH A 5 406 7 HOH HOH . 
G 5 HOH A 6 407 8 HOH HOH . 
G 5 HOH A 7 408 9 HOH HOH . 
G 5 HOH A 8 409 11 HOH HOH . 
G 5 HOH A 9 410 12 HOH HOH . 
G 5 HOH A 10 411 13 HOH HOH . 
G 5 HOH A 11 412 14 HOH HOH . 
G 5 HOH A 12 413 15 HOH HOH . 
G 5 HOH A 13 414 16 HOH HOH . 
G 5 HOH A 14 415 18 HOH HOH . 
G 5 HOH A 15 416 19 HOH HOH . 
G 5 HOH A 16 417 20 HOH HOH . 
G 5 HOH A 17 418 21 HOH HOH . 
G 5 HOH A 18 419 22 HOH HOH . 
G 5 HOH A 19 420 23 HOH HOH . 
G 5 HOH A 20 421 24 HOH HOH . 
G 5 HOH A 21 422 25 HOH HOH . 
G 5 HOH A 22 423 26 HOH HOH . 
G 5 HOH A 23 424 27 HOH HOH . 
G 5 HOH A 24 425 28 HOH HOH . 
G 5 HOH A 25 426 29 HOH HOH . 
G 5 HOH A 26 427 30 HOH HOH . 
G 5 HOH A 27 428 31 HOH HOH . 
G 5 HOH A 28 429 32 HOH HOH . 
G 5 HOH A 29 430 33 HOH HOH . 
G 5 HOH A 30 431 34 HOH HOH . 
G 5 HOH A 31 432 35 HOH HOH . 
G 5 HOH A 32 433 36 HOH HOH . 
G 5 HOH A 33 434 66 HOH HOH . 
G 5 HOH A 34 435 68 HOH HOH . 
G 5 HOH A 35 436 69 HOH HOH . 
G 5 HOH A 36 437 70 HOH HOH . 
G 5 HOH A 37 438 71 HOH HOH . 
G 5 HOH A 38 439 73 HOH HOH . 
G 5 HOH A 39 440 74 HOH HOH . 
G 5 HOH A 40 441 77 HOH HOH . 
G 5 HOH A 41 442 79 HOH HOH . 
G 5 HOH A 42 443 80 HOH HOH . 
G 5 HOH A 43 444 81 HOH HOH . 
G 5 HOH A 44 445 82 HOH HOH . 
G 5 HOH A 45 446 83 HOH HOH . 
G 5 HOH A 46 447 84 HOH HOH . 
G 5 HOH A 47 448 85 HOH HOH . 
G 5 HOH A 48 449 97 HOH HOH . 
G 5 HOH A 49 450 98 HOH HOH . 
G 5 HOH A 50 451 100 HOH HOH . 
G 5 HOH A 51 452 101 HOH HOH . 
G 5 HOH A 52 453 102 HOH HOH . 
G 5 HOH A 53 454 103 HOH HOH . 
G 5 HOH A 54 455 105 HOH HOH . 
G 5 HOH A 55 456 108 HOH HOH . 
G 5 HOH A 56 457 109 HOH HOH . 
G 5 HOH A 57 458 110 HOH HOH . 
G 5 HOH A 58 459 111 HOH HOH . 
G 5 HOH A 59 460 112 HOH HOH . 
G 5 HOH A 60 461 113 HOH HOH . 
G 5 HOH A 61 462 114 HOH HOH . 
G 5 HOH A 62 463 116 HOH HOH . 
G 5 HOH A 63 464 117 HOH HOH . 
G 5 HOH A 64 465 118 HOH HOH . 
G 5 HOH A 65 466 119 HOH HOH . 
G 5 HOH A 66 467 120 HOH HOH . 
G 5 HOH A 67 468 121 HOH HOH . 
G 5 HOH A 68 469 122 HOH HOH . 
G 5 HOH A 69 470 134 HOH HOH . 
G 5 HOH A 70 471 140 HOH HOH . 
G 5 HOH A 71 472 143 HOH HOH . 
G 5 HOH A 72 473 144 HOH HOH . 
H 5 HOH B 1 203 3 HOH HOH . 
H 5 HOH B 2 204 5 HOH HOH . 
H 5 HOH B 3 205 10 HOH HOH . 
H 5 HOH B 4 206 17 HOH HOH . 
H 5 HOH B 5 207 37 HOH HOH . 
H 5 HOH B 6 208 38 HOH HOH . 
H 5 HOH B 7 209 39 HOH HOH . 
H 5 HOH B 8 210 40 HOH HOH . 
H 5 HOH B 9 211 41 HOH HOH . 
H 5 HOH B 10 212 42 HOH HOH . 
H 5 HOH B 11 213 43 HOH HOH . 
H 5 HOH B 12 214 44 HOH HOH . 
H 5 HOH B 13 215 45 HOH HOH . 
H 5 HOH B 14 216 46 HOH HOH . 
H 5 HOH B 15 217 47 HOH HOH . 
H 5 HOH B 16 218 48 HOH HOH . 
H 5 HOH B 17 219 49 HOH HOH . 
H 5 HOH B 18 220 50 HOH HOH . 
H 5 HOH B 19 221 51 HOH HOH . 
H 5 HOH B 20 222 52 HOH HOH . 
H 5 HOH B 21 223 53 HOH HOH . 
H 5 HOH B 22 224 54 HOH HOH . 
H 5 HOH B 23 225 55 HOH HOH . 
H 5 HOH B 24 226 56 HOH HOH . 
H 5 HOH B 25 227 57 HOH HOH . 
H 5 HOH B 26 228 58 HOH HOH . 
H 5 HOH B 27 229 59 HOH HOH . 
H 5 HOH B 28 230 60 HOH HOH . 
H 5 HOH B 29 231 61 HOH HOH . 
H 5 HOH B 30 232 62 HOH HOH . 
H 5 HOH B 31 233 63 HOH HOH . 
H 5 HOH B 32 234 64 HOH HOH . 
H 5 HOH B 33 235 65 HOH HOH . 
H 5 HOH B 34 236 67 HOH HOH . 
H 5 HOH B 35 237 72 HOH HOH . 
H 5 HOH B 36 238 75 HOH HOH . 
H 5 HOH B 37 239 76 HOH HOH . 
H 5 HOH B 38 240 78 HOH HOH . 
H 5 HOH B 39 241 86 HOH HOH . 
H 5 HOH B 40 242 87 HOH HOH . 
H 5 HOH B 41 243 88 HOH HOH . 
H 5 HOH B 42 244 89 HOH HOH . 
H 5 HOH B 43 245 90 HOH HOH . 
H 5 HOH B 44 246 91 HOH HOH . 
H 5 HOH B 45 247 92 HOH HOH . 
H 5 HOH B 46 248 93 HOH HOH . 
H 5 HOH B 47 249 94 HOH HOH . 
H 5 HOH B 48 250 95 HOH HOH . 
H 5 HOH B 49 251 96 HOH HOH . 
H 5 HOH B 50 252 99 HOH HOH . 
H 5 HOH B 51 253 104 HOH HOH . 
H 5 HOH B 52 254 106 HOH HOH . 
H 5 HOH B 53 255 107 HOH HOH . 
H 5 HOH B 54 256 115 HOH HOH . 
H 5 HOH B 55 257 123 HOH HOH . 
H 5 HOH B 56 258 124 HOH HOH . 
H 5 HOH B 57 259 125 HOH HOH . 
H 5 HOH B 58 260 126 HOH HOH . 
H 5 HOH B 59 261 127 HOH HOH . 
H 5 HOH B 60 262 128 HOH HOH . 
H 5 HOH B 61 263 129 HOH HOH . 
H 5 HOH B 62 264 130 HOH HOH . 
H 5 HOH B 63 265 131 HOH HOH . 
H 5 HOH B 64 266 132 HOH HOH . 
H 5 HOH B 65 267 133 HOH HOH . 
H 5 HOH B 66 268 135 HOH HOH . 
H 5 HOH B 67 269 136 HOH HOH . 
H 5 HOH B 68 270 137 HOH HOH . 
H 5 HOH B 69 271 138 HOH HOH . 
H 5 HOH B 70 272 139 HOH HOH . 
H 5 HOH B 71 273 141 HOH HOH . 
H 5 HOH B 72 274 142 HOH HOH . 
H 5 HOH B 73 275 145 HOH HOH . 
H 5 HOH B 74 276 146 HOH HOH . 
H 5 HOH B 75 277 147 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 TDA . . . D 3 12.547 33.074 35.676 1 69.64 ? O21 TDA 201 A 1 
HETATM 2 O O22 TDA . . . D 3 14.17 32.915 37.099 1 69.91 ? O22 TDA 201 A 1 
HETATM 3 C C21 TDA . . . D 3 13.83 33.061 35.983 1 69.09 ? C21 TDA 201 A 1 
HETATM 4 C C22 TDA . . . D 3 14.19 32.052 34.817 1 68.09 ? C22 TDA 201 A 1 
HETATM 5 C C23 TDA . . . D 3 15.055 30.81 35.234 1 66.26 ? C23 TDA 201 A 1 
HETATM 6 C C24 TDA . . . D 3 16.226 30.724 34.35 1 65.32 ? C24 TDA 201 A 1 
HETATM 7 C C25 TDA . . . D 3 16.342 29.347 33.521 1 64.32 ? C25 TDA 201 A 1 
HETATM 8 C C26 TDA . . . D 3 15.962 29.539 32.062 1 63.56 ? C26 TDA 201 A 1 
HETATM 9 C C27 TDA . . . D 3 17.263 29.983 31.165 1 61.83 ? C27 TDA 201 A 1 
HETATM 10 C C28 TDA . . . D 3 16.77 30.171 29.571 1 61.98 ? C28 TDA 201 A 1 
HETATM 11 C C29 TDA . . . D 3 15.212 30.697 29.586 1 62.18 ? C29 TDA 201 A 1 
HETATM 12 C C30 TDA . . . D 3 14.762 30.892 28.044 1 62.2 ? C30 TDA 201 A 1 
HETATM 13 C C31 TDA . . . D 3 13.663 29.842 27.99 1 62.69 ? C31 TDA 201 A 1 
HETATM 14 C C32 TDA . . . D 3 12.273 30.174 28.884 1 62.99 ? C32 TDA 201 A 1 
HETATM 15 C C33 TDA . . . D 3 10.862 29.587 29.169 1 62.99 ? C33 TDA 201 A 1 
#
_model_server_stats.io_time_ms              109 
_model_server_stats.parse_time_ms           98 
_model_server_stats.create_model_time_ms    102 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#