data_1TP2 # _model_server_result.job_id XqA3H2bGoN6pZxSQ9pFtaQ _model_server_result.datetime_utc '2024-12-27 01:15:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 1TP2 # _exptl.entry_id 1TP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-TRIDECANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TP2 _cell.length_a 45.866 _cell.length_b 69.071 _cell.length_c 75.646 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 121 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 121 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C13 H26 O2' _chem_comp.formula_weight 214.344 _chem_comp.id TDA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-TRIDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C21 TDA sing 301 n n O21 H21 TDA sing 302 n n O22 C21 TDA doub 303 n n C21 C22 TDA sing 304 n n C22 C23 TDA sing 305 n n C22 H222 TDA sing 306 n n C22 H221 TDA sing 307 n n C23 C24 TDA sing 308 n n C23 H232 TDA sing 309 n n C23 H231 TDA sing 310 n n C24 C25 TDA sing 311 n n C24 H242 TDA sing 312 n n C24 H241 TDA sing 313 n n C25 C26 TDA sing 314 n n C25 H252 TDA sing 315 n n C25 H251 TDA sing 316 n n C26 C27 TDA sing 317 n n C26 H262 TDA sing 318 n n C26 H261 TDA sing 319 n n C27 C28 TDA sing 320 n n C27 H272 TDA sing 321 n n C27 H271 TDA sing 322 n n C28 C29 TDA sing 323 n n C28 H282 TDA sing 324 n n C28 H281 TDA sing 325 n n C29 C30 TDA sing 326 n n C29 H292 TDA sing 327 n n C29 H291 TDA sing 328 n n C30 C31 TDA sing 329 n n C30 H302 TDA sing 330 n n C30 H301 TDA sing 331 n n C31 C32 TDA sing 332 n n C31 H312 TDA sing 333 n n C31 H311 TDA sing 334 n n C32 C33 TDA sing 335 n n C32 H322 TDA sing 336 n n C32 H321 TDA sing 337 n n C33 H333 TDA sing 338 n n C33 H332 TDA sing 339 n n C33 H331 TDA sing 340 n n # _atom_sites.entry_id 1TP2 _atom_sites.fract_transf_matrix[1][1] 0.021803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 301 SO4 SO4 . D 3 TDA A 1 201 201 TDA TDA . E 4 ACY A 1 401 401 ACY ACY . F 3 TDA B 1 202 202 TDA TDA . G 5 HOH A 1 402 1 HOH HOH . G 5 HOH A 2 403 2 HOH HOH . G 5 HOH A 3 404 4 HOH HOH . G 5 HOH A 4 405 6 HOH HOH . G 5 HOH A 5 406 7 HOH HOH . G 5 HOH A 6 407 8 HOH HOH . G 5 HOH A 7 408 9 HOH HOH . G 5 HOH A 8 409 11 HOH HOH . G 5 HOH A 9 410 12 HOH HOH . G 5 HOH A 10 411 13 HOH HOH . G 5 HOH A 11 412 14 HOH HOH . G 5 HOH A 12 413 15 HOH HOH . G 5 HOH A 13 414 16 HOH HOH . G 5 HOH A 14 415 18 HOH HOH . G 5 HOH A 15 416 19 HOH HOH . G 5 HOH A 16 417 20 HOH HOH . G 5 HOH A 17 418 21 HOH HOH . G 5 HOH A 18 419 22 HOH HOH . G 5 HOH A 19 420 23 HOH HOH . G 5 HOH A 20 421 24 HOH HOH . G 5 HOH A 21 422 25 HOH HOH . G 5 HOH A 22 423 26 HOH HOH . G 5 HOH A 23 424 27 HOH HOH . G 5 HOH A 24 425 28 HOH HOH . G 5 HOH A 25 426 29 HOH HOH . G 5 HOH A 26 427 30 HOH HOH . G 5 HOH A 27 428 31 HOH HOH . G 5 HOH A 28 429 32 HOH HOH . G 5 HOH A 29 430 33 HOH HOH . G 5 HOH A 30 431 34 HOH HOH . G 5 HOH A 31 432 35 HOH HOH . G 5 HOH A 32 433 36 HOH HOH . G 5 HOH A 33 434 66 HOH HOH . G 5 HOH A 34 435 68 HOH HOH . G 5 HOH A 35 436 69 HOH HOH . G 5 HOH A 36 437 70 HOH HOH . G 5 HOH A 37 438 71 HOH HOH . G 5 HOH A 38 439 73 HOH HOH . G 5 HOH A 39 440 74 HOH HOH . G 5 HOH A 40 441 77 HOH HOH . G 5 HOH A 41 442 79 HOH HOH . G 5 HOH A 42 443 80 HOH HOH . G 5 HOH A 43 444 81 HOH HOH . G 5 HOH A 44 445 82 HOH HOH . G 5 HOH A 45 446 83 HOH HOH . G 5 HOH A 46 447 84 HOH HOH . G 5 HOH A 47 448 85 HOH HOH . G 5 HOH A 48 449 97 HOH HOH . G 5 HOH A 49 450 98 HOH HOH . G 5 HOH A 50 451 100 HOH HOH . G 5 HOH A 51 452 101 HOH HOH . G 5 HOH A 52 453 102 HOH HOH . G 5 HOH A 53 454 103 HOH HOH . G 5 HOH A 54 455 105 HOH HOH . G 5 HOH A 55 456 108 HOH HOH . G 5 HOH A 56 457 109 HOH HOH . G 5 HOH A 57 458 110 HOH HOH . G 5 HOH A 58 459 111 HOH HOH . G 5 HOH A 59 460 112 HOH HOH . G 5 HOH A 60 461 113 HOH HOH . G 5 HOH A 61 462 114 HOH HOH . G 5 HOH A 62 463 116 HOH HOH . G 5 HOH A 63 464 117 HOH HOH . G 5 HOH A 64 465 118 HOH HOH . G 5 HOH A 65 466 119 HOH HOH . G 5 HOH A 66 467 120 HOH HOH . G 5 HOH A 67 468 121 HOH HOH . G 5 HOH A 68 469 122 HOH HOH . G 5 HOH A 69 470 134 HOH HOH . G 5 HOH A 70 471 140 HOH HOH . G 5 HOH A 71 472 143 HOH HOH . G 5 HOH A 72 473 144 HOH HOH . H 5 HOH B 1 203 3 HOH HOH . H 5 HOH B 2 204 5 HOH HOH . H 5 HOH B 3 205 10 HOH HOH . H 5 HOH B 4 206 17 HOH HOH . H 5 HOH B 5 207 37 HOH HOH . H 5 HOH B 6 208 38 HOH HOH . H 5 HOH B 7 209 39 HOH HOH . H 5 HOH B 8 210 40 HOH HOH . H 5 HOH B 9 211 41 HOH HOH . H 5 HOH B 10 212 42 HOH HOH . H 5 HOH B 11 213 43 HOH HOH . H 5 HOH B 12 214 44 HOH HOH . H 5 HOH B 13 215 45 HOH HOH . H 5 HOH B 14 216 46 HOH HOH . H 5 HOH B 15 217 47 HOH HOH . H 5 HOH B 16 218 48 HOH HOH . H 5 HOH B 17 219 49 HOH HOH . H 5 HOH B 18 220 50 HOH HOH . H 5 HOH B 19 221 51 HOH HOH . H 5 HOH B 20 222 52 HOH HOH . H 5 HOH B 21 223 53 HOH HOH . H 5 HOH B 22 224 54 HOH HOH . H 5 HOH B 23 225 55 HOH HOH . H 5 HOH B 24 226 56 HOH HOH . H 5 HOH B 25 227 57 HOH HOH . H 5 HOH B 26 228 58 HOH HOH . H 5 HOH B 27 229 59 HOH HOH . H 5 HOH B 28 230 60 HOH HOH . H 5 HOH B 29 231 61 HOH HOH . H 5 HOH B 30 232 62 HOH HOH . H 5 HOH B 31 233 63 HOH HOH . H 5 HOH B 32 234 64 HOH HOH . H 5 HOH B 33 235 65 HOH HOH . H 5 HOH B 34 236 67 HOH HOH . H 5 HOH B 35 237 72 HOH HOH . H 5 HOH B 36 238 75 HOH HOH . H 5 HOH B 37 239 76 HOH HOH . H 5 HOH B 38 240 78 HOH HOH . H 5 HOH B 39 241 86 HOH HOH . H 5 HOH B 40 242 87 HOH HOH . H 5 HOH B 41 243 88 HOH HOH . H 5 HOH B 42 244 89 HOH HOH . H 5 HOH B 43 245 90 HOH HOH . H 5 HOH B 44 246 91 HOH HOH . H 5 HOH B 45 247 92 HOH HOH . H 5 HOH B 46 248 93 HOH HOH . H 5 HOH B 47 249 94 HOH HOH . H 5 HOH B 48 250 95 HOH HOH . H 5 HOH B 49 251 96 HOH HOH . H 5 HOH B 50 252 99 HOH HOH . H 5 HOH B 51 253 104 HOH HOH . H 5 HOH B 52 254 106 HOH HOH . H 5 HOH B 53 255 107 HOH HOH . H 5 HOH B 54 256 115 HOH HOH . H 5 HOH B 55 257 123 HOH HOH . H 5 HOH B 56 258 124 HOH HOH . H 5 HOH B 57 259 125 HOH HOH . H 5 HOH B 58 260 126 HOH HOH . H 5 HOH B 59 261 127 HOH HOH . H 5 HOH B 60 262 128 HOH HOH . H 5 HOH B 61 263 129 HOH HOH . H 5 HOH B 62 264 130 HOH HOH . H 5 HOH B 63 265 131 HOH HOH . H 5 HOH B 64 266 132 HOH HOH . H 5 HOH B 65 267 133 HOH HOH . H 5 HOH B 66 268 135 HOH HOH . H 5 HOH B 67 269 136 HOH HOH . H 5 HOH B 68 270 137 HOH HOH . H 5 HOH B 69 271 138 HOH HOH . H 5 HOH B 70 272 139 HOH HOH . H 5 HOH B 71 273 141 HOH HOH . H 5 HOH B 72 274 142 HOH HOH . H 5 HOH B 73 275 145 HOH HOH . H 5 HOH B 74 276 146 HOH HOH . H 5 HOH B 75 277 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 TDA . . . F 3 12.064 27.27 16.205 1 66.3 ? O21 TDA 202 B 1 HETATM 2 O O22 TDA . . . F 3 11.081 29.161 15.834 1 67.61 ? O22 TDA 202 B 1 HETATM 3 C C21 TDA . . . F 3 11.012 28.096 16.294 1 66.38 ? C21 TDA 202 B 1 HETATM 4 C C22 TDA . . . F 3 9.971 27.035 15.781 1 65.05 ? C22 TDA 202 B 1 HETATM 5 C C23 TDA . . . F 3 9.047 27.531 14.622 1 63.69 ? C23 TDA 202 B 1 HETATM 6 C C24 TDA . . . F 3 7.717 26.871 14.734 1 62.7 ? C24 TDA 202 B 1 HETATM 7 C C25 TDA . . . F 3 7.659 25.34 14.163 1 61.91 ? C25 TDA 202 B 1 HETATM 8 C C26 TDA . . . F 3 7.058 25.179 12.756 1 61.62 ? C26 TDA 202 B 1 HETATM 9 C C27 TDA . . . F 3 8.096 24.251 11.819 1 62.2 ? C27 TDA 202 B 1 HETATM 10 C C28 TDA . . . F 3 7.286 24.02 10.393 1 61.97 ? C28 TDA 202 B 1 HETATM 11 C C29 TDA . . . F 3 7.625 22.476 9.981 1 61.46 ? C29 TDA 202 B 1 HETATM 12 C C30 TDA . . . F 3 6.712 22.244 8.698 1 61.77 ? C30 TDA 202 B 1 HETATM 13 C C31 TDA . . . F 3 7.787 21.732 7.785 1 61.36 ? C31 TDA 202 B 1 HETATM 14 C C32 TDA . . . F 3 7.118 21.357 6.307 1 60.94 ? C32 TDA 202 B 1 HETATM 15 C C33 TDA . . . F 3 5.754 20.902 5.78 1 59.23 ? C33 TDA 202 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #