data_1TP8
#
_model_server_result.job_id            KBdfZvT2GGcU-HFxcMMttA 
_model_server_result.datetime_utc      '2024-11-13 06:39:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":500}' 
#
_entry.id    1TP8 
#
_exptl.entry_id    1TP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.182 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl alpha-D-galactopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1TP8 
_cell.length_a            89.9 
_cell.length_b            121.9 
_cell.length_c            131.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA octameric 8 software_defined_assembly 5 
PISA tetrameric 4 software_defined_assembly 6 
PISA tetrameric 4 software_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,M,N 1 1 
C,D,J,O 2 1 
E,F,K,P,Q 3 1 
G,H,L,R 4 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 5 1 
E,F,G,H,K,L,P,Q,R 6 1 
A,B,C,D,I,J,M,N,O 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C7 H14 O6' 
_chem_comp.formula_weight    194.182 
_chem_comp.id                AMG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'methyl alpha-D-galactopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'ALPHA-METHYL-D-GALACTOSIDE;methyl alpha-D-galactoside;methyl D-galactoside;methyl galactoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 AMG sing 13 n n 
C1 O1 AMG sing 14 n n 
C1 O5 AMG sing 15 n n 
C1 H1 AMG sing 16 n n 
C2 C3 AMG sing 17 n n 
C2 O2 AMG sing 18 n n 
C2 H2 AMG sing 19 n n 
C3 C4 AMG sing 20 n n 
C3 O3 AMG sing 21 n n 
C3 H3 AMG sing 22 n n 
C4 C5 AMG sing 23 n n 
C4 O4 AMG sing 24 n n 
C4 H4 AMG sing 25 n n 
C5 C6 AMG sing 26 n n 
C5 O5 AMG sing 27 n n 
C5 H5 AMG sing 28 n n 
C6 O6 AMG sing 29 n n 
C6 H61 AMG sing 30 n n 
C6 H62 AMG sing 31 n n 
C7 O1 AMG sing 32 n n 
C7 H71 AMG sing 33 n n 
C7 H72 AMG sing 34 n n 
C7 H73 AMG sing 35 n n 
O2 HO2 AMG sing 36 n n 
O3 HO3 AMG sing 37 n n 
O4 HO4 AMG sing 38 n n 
O6 HO6 AMG sing 39 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
AMG DGalp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
AMG 1-methyl-a-D-galactopyranose 'COMMON NAME' GMML 1 
AMG a-methyl-galactoside 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     1TP8 
_atom_sites.fract_transf_matrix[1][1]    0.01112 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0076 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 AMG A 1 500 200 AMG AMG . 
J 3 AMG C 1 501 200 AMG AMG . 
K 3 AMG E 1 502 200 AMG AMG . 
L 3 AMG G 1 503 200 AMG AMG . 
M 4 HOH A 1 501 4 HOH WAT . 
M 4 HOH A 2 502 1 HOH WAT . 
M 4 HOH A 3 503 2 HOH WAT . 
M 4 HOH A 4 504 3 HOH WAT . 
M 4 HOH A 5 505 4 HOH WAT . 
M 4 HOH A 6 506 5 HOH WAT . 
M 4 HOH A 7 507 6 HOH WAT . 
M 4 HOH A 8 508 7 HOH WAT . 
M 4 HOH A 9 509 8 HOH WAT . 
M 4 HOH A 10 510 13 HOH WAT . 
M 4 HOH A 11 511 14 HOH WAT . 
M 4 HOH A 12 512 15 HOH WAT . 
M 4 HOH A 13 513 21 HOH WAT . 
M 4 HOH A 14 514 28 HOH WAT . 
M 4 HOH A 15 515 31 HOH WAT . 
M 4 HOH A 16 516 32 HOH WAT . 
M 4 HOH A 17 517 34 HOH WAT . 
M 4 HOH A 18 518 39 HOH WAT . 
M 4 HOH A 19 519 41 HOH WAT . 
N 4 HOH B 1 111 25 HOH WAT . 
N 4 HOH B 2 313 16 HOH WAT . 
N 4 HOH B 3 319 36 HOH WAT . 
O 4 HOH C 1 502 1 HOH WAT . 
O 4 HOH C 2 503 2 HOH WAT . 
O 4 HOH C 3 504 3 HOH WAT . 
O 4 HOH C 4 505 5 HOH WAT . 
O 4 HOH C 5 506 6 HOH WAT . 
O 4 HOH C 6 507 7 HOH WAT . 
O 4 HOH C 7 508 8 HOH WAT . 
O 4 HOH C 8 509 17 HOH WAT . 
O 4 HOH C 9 510 26 HOH WAT . 
O 4 HOH C 10 511 27 HOH WAT . 
O 4 HOH C 11 512 30 HOH WAT . 
O 4 HOH C 12 513 37 HOH WAT . 
O 4 HOH C 13 514 39 HOH WAT . 
O 4 HOH C 14 515 40 HOH WAT . 
O 4 HOH C 15 516 42 HOH WAT . 
O 4 HOH C 16 517 24 HOH WAT . 
O 4 HOH C 17 518 11 HOH WAT . 
P 4 HOH E 1 503 1 HOH WAT . 
P 4 HOH E 2 504 2 HOH WAT . 
P 4 HOH E 3 505 3 HOH WAT . 
P 4 HOH E 4 506 4 HOH WAT . 
P 4 HOH E 5 507 5 HOH WAT . 
P 4 HOH E 6 508 6 HOH WAT . 
P 4 HOH E 7 509 7 HOH WAT . 
P 4 HOH E 8 510 8 HOH WAT . 
P 4 HOH E 9 511 23 HOH WAT . 
P 4 HOH E 10 512 33 HOH WAT . 
P 4 HOH E 11 513 35 HOH WAT . 
P 4 HOH E 12 514 43 HOH WAT . 
P 4 HOH E 13 515 44 HOH WAT . 
P 4 HOH E 14 516 4 HOH WAT . 
Q 4 HOH F 1 109 18 HOH WAT . 
R 4 HOH G 1 504 43 HOH WAT . 
R 4 HOH G 2 505 1 HOH WAT . 
R 4 HOH G 3 506 2 HOH WAT . 
R 4 HOH G 4 507 3 HOH WAT . 
R 4 HOH G 5 508 5 HOH WAT . 
R 4 HOH G 6 509 6 HOH WAT . 
R 4 HOH G 7 510 7 HOH WAT . 
R 4 HOH G 8 511 8 HOH WAT . 
R 4 HOH G 9 512 11 HOH WAT . 
R 4 HOH G 10 513 14 HOH WAT . 
R 4 HOH G 11 514 19 HOH WAT . 
R 4 HOH G 12 515 22 HOH WAT . 
R 4 HOH G 13 516 29 HOH WAT . 
R 4 HOH G 14 517 34 HOH WAT . 
R 4 HOH G 15 518 38 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AMG . . . I 3 22.735 45.491 35.328 1 30.99 ? C1 AMG 500 A 1 
HETATM 2 C C2 AMG . . . I 3 23.878 46.441 34.957 1 30.72 ? C2 AMG 500 A 1 
HETATM 3 C C3 AMG . . . I 3 23.494 47.892 35.263 1 29.9 ? C3 AMG 500 A 1 
HETATM 4 C C4 AMG . . . I 3 22.135 48.227 34.651 1 29.56 ? C4 AMG 500 A 1 
HETATM 5 C C5 AMG . . . I 3 21.105 47.166 34.953 1 30.62 ? C5 AMG 500 A 1 
HETATM 6 C C6 AMG . . . I 3 19.788 47.4 34.269 1 31.35 ? C6 AMG 500 A 1 
HETATM 7 C C7 AMG . . . I 3 21.591 44.843 37.256 1 29.61 ? C7 AMG 500 A 1 
HETATM 8 O O1 AMG . . . I 3 22.549 45.725 36.706 1 30.28 ? O1 AMG 500 A 1 
HETATM 9 O O2 AMG . . . I 3 25.002 46.034 35.697 1 31.08 ? O2 AMG 500 A 1 
HETATM 10 O O3 AMG . . . I 3 24.491 48.737 34.667 1 29.49 ? O3 AMG 500 A 1 
HETATM 11 O O4 AMG . . . I 3 22.283 48.257 33.245 1 28.74 ? O4 AMG 500 A 1 
HETATM 12 O O5 AMG . . . I 3 21.601 45.874 34.531 1 31.44 ? O5 AMG 500 A 1 
HETATM 13 O O6 AMG . . . I 3 19.725 47.161 32.885 1 31.46 ? O6 AMG 500 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#