data_1TPB # _model_server_result.job_id TkD4OSxYxdnP9c77nHielA _model_server_result.datetime_utc '2024-11-22 04:54:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":250}' # _entry.id 1TPB # _exptl.entry_id 1TPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOGLYCOLOHYDROXAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TPB _cell.length_a 136.4 _cell.length_b 74.1 _cell.length_c 57.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 N O6 P' _chem_comp.formula_weight 171.046 _chem_comp.id PGH _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOGLYCOLOHYDROXAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGH sing 237 n n C1 N2 PGH sing 238 n n C1 O1 PGH doub 239 n n C2 O1P PGH sing 240 n n C2 H21 PGH sing 241 n n C2 H22 PGH sing 242 n n N2 O2 PGH sing 243 n n N2 HN PGH sing 244 n n O2 HO2 PGH sing 245 n n O1P P PGH sing 246 n n O2P P PGH doub 247 n n O3P P PGH sing 248 n n O3P HOP3 PGH sing 249 n n O4P P PGH sing 250 n n O4P HOP4 PGH sing 251 n n # _atom_sites.entry_id 1TPB _atom_sites.fract_transf_matrix[1][1] 0.007331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGH 1 1 250 250 PGH PGH . D 2 PGH 2 1 250 250 PGH PGH . E 3 HOH 1 1 301 301 HOH HOH . E 3 HOH 1 2 303 303 HOH HOH . E 3 HOH 1 3 305 305 HOH HOH . E 3 HOH 1 4 307 307 HOH HOH . E 3 HOH 1 5 308 308 HOH HOH . E 3 HOH 1 6 309 309 HOH HOH . E 3 HOH 1 7 310 310 HOH HOH . E 3 HOH 1 8 311 311 HOH HOH . E 3 HOH 1 9 312 312 HOH HOH . E 3 HOH 1 10 315 315 HOH HOH . E 3 HOH 1 11 318 318 HOH HOH . E 3 HOH 1 12 319 319 HOH HOH . E 3 HOH 1 13 320 320 HOH HOH . E 3 HOH 1 14 322 322 HOH HOH . E 3 HOH 1 15 323 323 HOH HOH . E 3 HOH 1 16 324 324 HOH HOH . E 3 HOH 1 17 325 325 HOH HOH . E 3 HOH 1 18 326 326 HOH HOH . E 3 HOH 1 19 327 327 HOH HOH . E 3 HOH 1 20 328 328 HOH HOH . E 3 HOH 1 21 330 330 HOH HOH . E 3 HOH 1 22 331 331 HOH HOH . E 3 HOH 1 23 333 333 HOH HOH . E 3 HOH 1 24 336 336 HOH HOH . E 3 HOH 1 25 337 337 HOH HOH . E 3 HOH 1 26 338 338 HOH HOH . E 3 HOH 1 27 342 342 HOH HOH . E 3 HOH 1 28 343 343 HOH HOH . E 3 HOH 1 29 344 344 HOH HOH . E 3 HOH 1 30 347 347 HOH HOH . E 3 HOH 1 31 351 351 HOH HOH . E 3 HOH 1 32 352 352 HOH HOH . E 3 HOH 1 33 353 353 HOH HOH . E 3 HOH 1 34 354 354 HOH HOH . E 3 HOH 1 35 355 355 HOH HOH . E 3 HOH 1 36 356 356 HOH HOH . E 3 HOH 1 37 361 361 HOH HOH . E 3 HOH 1 38 362 362 HOH HOH . E 3 HOH 1 39 363 363 HOH HOH . E 3 HOH 1 40 364 364 HOH HOH . E 3 HOH 1 41 365 365 HOH HOH . E 3 HOH 1 42 367 367 HOH HOH . E 3 HOH 1 43 368 368 HOH HOH . E 3 HOH 1 44 369 369 HOH HOH . E 3 HOH 1 45 374 374 HOH HOH . E 3 HOH 1 46 376 376 HOH HOH . E 3 HOH 1 47 378 378 HOH HOH . E 3 HOH 1 48 379 379 HOH HOH . E 3 HOH 1 49 384 384 HOH HOH . E 3 HOH 1 50 386 386 HOH HOH . E 3 HOH 1 51 387 387 HOH HOH . E 3 HOH 1 52 389 389 HOH HOH . E 3 HOH 1 53 390 390 HOH HOH . E 3 HOH 1 54 393 393 HOH HOH . E 3 HOH 1 55 394 394 HOH HOH . E 3 HOH 1 56 396 396 HOH HOH . E 3 HOH 1 57 399 399 HOH HOH . E 3 HOH 1 58 400 400 HOH HOH . E 3 HOH 1 59 401 401 HOH HOH . E 3 HOH 1 60 402 402 HOH HOH . E 3 HOH 1 61 403 403 HOH HOH . E 3 HOH 1 62 405 405 HOH HOH . E 3 HOH 1 63 406 406 HOH HOH . E 3 HOH 1 64 407 407 HOH HOH . E 3 HOH 1 65 408 408 HOH HOH . E 3 HOH 1 66 412 412 HOH HOH . E 3 HOH 1 67 413 413 HOH HOH . E 3 HOH 1 68 414 414 HOH HOH . E 3 HOH 1 69 416 416 HOH HOH . E 3 HOH 1 70 418 418 HOH HOH . E 3 HOH 1 71 423 423 HOH HOH . E 3 HOH 1 72 426 426 HOH HOH . E 3 HOH 1 73 428 428 HOH HOH . E 3 HOH 1 74 431 431 HOH HOH . E 3 HOH 1 75 432 432 HOH HOH . E 3 HOH 1 76 433 433 HOH HOH . E 3 HOH 1 77 435 435 HOH HOH . E 3 HOH 1 78 436 436 HOH HOH . E 3 HOH 1 79 437 437 HOH HOH . E 3 HOH 1 80 449 449 HOH HOH . E 3 HOH 1 81 454 454 HOH HOH . E 3 HOH 1 82 456 456 HOH HOH . E 3 HOH 1 83 457 457 HOH HOH . E 3 HOH 1 84 463 463 HOH HOH . E 3 HOH 1 85 464 464 HOH HOH . E 3 HOH 1 86 474 474 HOH HOH . E 3 HOH 1 87 479 479 HOH HOH . E 3 HOH 1 88 480 480 HOH HOH . E 3 HOH 1 89 482 482 HOH HOH . E 3 HOH 1 90 483 483 HOH HOH . E 3 HOH 1 91 484 484 HOH HOH . E 3 HOH 1 92 485 485 HOH HOH . E 3 HOH 1 93 486 486 HOH HOH . E 3 HOH 1 94 488 488 HOH HOH . E 3 HOH 1 95 489 489 HOH HOH . E 3 HOH 1 96 490 490 HOH HOH . E 3 HOH 1 97 492 492 HOH HOH . E 3 HOH 1 98 493 493 HOH HOH . E 3 HOH 1 99 495 495 HOH HOH . E 3 HOH 1 100 496 496 HOH HOH . E 3 HOH 1 101 497 497 HOH HOH . E 3 HOH 1 102 498 498 HOH HOH . E 3 HOH 1 103 500 500 HOH HOH . E 3 HOH 1 104 501 501 HOH HOH . E 3 HOH 1 105 503 503 HOH HOH . E 3 HOH 1 106 507 507 HOH HOH . E 3 HOH 1 107 508 508 HOH HOH . E 3 HOH 1 108 512 512 HOH HOH . E 3 HOH 1 109 513 513 HOH HOH . E 3 HOH 1 110 516 516 HOH HOH . E 3 HOH 1 111 522 522 HOH HOH . E 3 HOH 1 112 526 526 HOH HOH . E 3 HOH 1 113 527 527 HOH HOH . E 3 HOH 1 114 530 530 HOH HOH . E 3 HOH 1 115 531 531 HOH HOH . E 3 HOH 1 116 532 532 HOH HOH . E 3 HOH 1 117 533 533 HOH HOH . E 3 HOH 1 118 534 534 HOH HOH . E 3 HOH 1 119 540 540 HOH HOH . E 3 HOH 1 120 543 543 HOH HOH . E 3 HOH 1 121 544 544 HOH HOH . E 3 HOH 1 122 551 551 HOH HOH . E 3 HOH 1 123 553 553 HOH HOH . F 3 HOH 2 1 302 302 HOH HOH . F 3 HOH 2 2 304 304 HOH HOH . F 3 HOH 2 3 306 306 HOH HOH . F 3 HOH 2 4 313 313 HOH HOH . F 3 HOH 2 5 314 314 HOH HOH . F 3 HOH 2 6 316 316 HOH HOH . F 3 HOH 2 7 317 317 HOH HOH . F 3 HOH 2 8 321 321 HOH HOH . F 3 HOH 2 9 329 329 HOH HOH . F 3 HOH 2 10 332 332 HOH HOH . F 3 HOH 2 11 334 334 HOH HOH . F 3 HOH 2 12 335 335 HOH HOH . F 3 HOH 2 13 339 339 HOH HOH . F 3 HOH 2 14 340 340 HOH HOH . F 3 HOH 2 15 341 341 HOH HOH . F 3 HOH 2 16 345 345 HOH HOH . F 3 HOH 2 17 346 346 HOH HOH . F 3 HOH 2 18 348 348 HOH HOH . F 3 HOH 2 19 349 349 HOH HOH . F 3 HOH 2 20 350 350 HOH HOH . F 3 HOH 2 21 357 357 HOH HOH . F 3 HOH 2 22 358 358 HOH HOH . F 3 HOH 2 23 359 359 HOH HOH . F 3 HOH 2 24 360 360 HOH HOH . F 3 HOH 2 25 366 366 HOH HOH . F 3 HOH 2 26 370 370 HOH HOH . F 3 HOH 2 27 371 371 HOH HOH . F 3 HOH 2 28 372 372 HOH HOH . F 3 HOH 2 29 373 373 HOH HOH . F 3 HOH 2 30 375 375 HOH HOH . F 3 HOH 2 31 377 377 HOH HOH . F 3 HOH 2 32 380 380 HOH HOH . F 3 HOH 2 33 381 381 HOH HOH . F 3 HOH 2 34 382 382 HOH HOH . F 3 HOH 2 35 383 383 HOH HOH . F 3 HOH 2 36 385 385 HOH HOH . F 3 HOH 2 37 388 388 HOH HOH . F 3 HOH 2 38 391 391 HOH HOH . F 3 HOH 2 39 392 392 HOH HOH . F 3 HOH 2 40 395 395 HOH HOH . F 3 HOH 2 41 397 397 HOH HOH . F 3 HOH 2 42 398 398 HOH HOH . F 3 HOH 2 43 404 404 HOH HOH . F 3 HOH 2 44 409 409 HOH HOH . F 3 HOH 2 45 410 410 HOH HOH . F 3 HOH 2 46 411 411 HOH HOH . F 3 HOH 2 47 415 415 HOH HOH . F 3 HOH 2 48 417 417 HOH HOH . F 3 HOH 2 49 419 419 HOH HOH . F 3 HOH 2 50 420 420 HOH HOH . F 3 HOH 2 51 421 421 HOH HOH . F 3 HOH 2 52 422 422 HOH HOH . F 3 HOH 2 53 424 424 HOH HOH . F 3 HOH 2 54 425 425 HOH HOH . F 3 HOH 2 55 427 427 HOH HOH . F 3 HOH 2 56 429 429 HOH HOH . F 3 HOH 2 57 430 430 HOH HOH . F 3 HOH 2 58 434 434 HOH HOH . F 3 HOH 2 59 438 438 HOH HOH . F 3 HOH 2 60 439 439 HOH HOH . F 3 HOH 2 61 440 440 HOH HOH . F 3 HOH 2 62 441 441 HOH HOH . F 3 HOH 2 63 442 442 HOH HOH . F 3 HOH 2 64 443 443 HOH HOH . F 3 HOH 2 65 444 444 HOH HOH . F 3 HOH 2 66 445 445 HOH HOH . F 3 HOH 2 67 446 446 HOH HOH . F 3 HOH 2 68 447 447 HOH HOH . F 3 HOH 2 69 448 448 HOH HOH . F 3 HOH 2 70 450 450 HOH HOH . F 3 HOH 2 71 451 451 HOH HOH . F 3 HOH 2 72 452 452 HOH HOH . F 3 HOH 2 73 453 453 HOH HOH . F 3 HOH 2 74 455 455 HOH HOH . F 3 HOH 2 75 458 458 HOH HOH . F 3 HOH 2 76 459 459 HOH HOH . F 3 HOH 2 77 460 460 HOH HOH . F 3 HOH 2 78 461 461 HOH HOH . F 3 HOH 2 79 462 462 HOH HOH . F 3 HOH 2 80 465 465 HOH HOH . F 3 HOH 2 81 466 466 HOH HOH . F 3 HOH 2 82 467 467 HOH HOH . F 3 HOH 2 83 468 468 HOH HOH . F 3 HOH 2 84 469 469 HOH HOH . F 3 HOH 2 85 470 470 HOH HOH . F 3 HOH 2 86 471 471 HOH HOH . F 3 HOH 2 87 472 472 HOH HOH . F 3 HOH 2 88 473 473 HOH HOH . F 3 HOH 2 89 475 475 HOH HOH . F 3 HOH 2 90 476 476 HOH HOH . F 3 HOH 2 91 477 477 HOH HOH . F 3 HOH 2 92 478 478 HOH HOH . F 3 HOH 2 93 481 481 HOH HOH . F 3 HOH 2 94 487 487 HOH HOH . F 3 HOH 2 95 491 491 HOH HOH . F 3 HOH 2 96 494 494 HOH HOH . F 3 HOH 2 97 499 499 HOH HOH . F 3 HOH 2 98 502 502 HOH HOH . F 3 HOH 2 99 504 504 HOH HOH . F 3 HOH 2 100 505 505 HOH HOH . F 3 HOH 2 101 506 506 HOH HOH . F 3 HOH 2 102 509 509 HOH HOH . F 3 HOH 2 103 510 510 HOH HOH . F 3 HOH 2 104 511 511 HOH HOH . F 3 HOH 2 105 514 514 HOH HOH . F 3 HOH 2 106 515 515 HOH HOH . F 3 HOH 2 107 517 517 HOH HOH . F 3 HOH 2 108 518 518 HOH HOH . F 3 HOH 2 109 519 519 HOH HOH . F 3 HOH 2 110 520 520 HOH HOH . F 3 HOH 2 111 521 521 HOH HOH . F 3 HOH 2 112 523 523 HOH HOH . F 3 HOH 2 113 524 524 HOH HOH . F 3 HOH 2 114 525 525 HOH HOH . F 3 HOH 2 115 528 528 HOH HOH . F 3 HOH 2 116 529 529 HOH HOH . F 3 HOH 2 117 535 535 HOH HOH . F 3 HOH 2 118 536 536 HOH HOH . F 3 HOH 2 119 537 537 HOH HOH . F 3 HOH 2 120 538 538 HOH HOH . F 3 HOH 2 121 539 539 HOH HOH . F 3 HOH 2 122 541 541 HOH HOH . F 3 HOH 2 123 542 542 HOH HOH . F 3 HOH 2 124 545 545 HOH HOH . F 3 HOH 2 125 546 546 HOH HOH . F 3 HOH 2 126 547 547 HOH HOH . F 3 HOH 2 127 548 548 HOH HOH . F 3 HOH 2 128 549 549 HOH HOH . F 3 HOH 2 129 550 550 HOH HOH . F 3 HOH 2 130 552 552 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGH . . . C 2 23.754 29.622 19.541 1 14.55 ? C1 PGH 250 1 1 HETATM 2 C C2 PGH . . . C 2 24.925 30.585 19.752 1 13.69 ? C2 PGH 250 1 1 HETATM 3 N N2 PGH . . . C 2 23.711 29.113 18.342 1 15.4 ? N2 PGH 250 1 1 HETATM 4 O O2 PGH . . . C 2 22.711 28.196 18.006 1 18.15 ? O2 PGH 250 1 1 HETATM 5 O O1 PGH . . . C 2 22.999 29.432 20.501 1 14.87 ? O1 PGH 250 1 1 HETATM 6 O O1P PGH . . . C 2 24.626 31.456 20.792 1 11.69 ? O1P PGH 250 1 1 HETATM 7 O O2P PGH . . . C 2 26.901 32.063 22.133 1 12.26 ? O2P PGH 250 1 1 HETATM 8 O O3P PGH . . . C 2 26.389 33.442 19.721 1 12.02 ? O3P PGH 250 1 1 HETATM 9 O O4P PGH . . . C 2 25.08 33.813 22.13 1 11.23 ? O4P PGH 250 1 1 HETATM 10 P P PGH . . . C 2 25.704 32.749 21.115 1 11.68 ? P PGH 250 1 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #