data_1TQ6 # _model_server_result.job_id beChyrwlwk-lofkUHhusNg _model_server_result.datetime_utc '2024-11-24 18:33:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1TQ6 # _exptl.entry_id 1TQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TQ6 _cell.length_a 71.04 _cell.length_b 74.46 _cell.length_c 91.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 83 A SER 83 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A OD2 ASP 126 A ASP 126 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 C O2G GNP . A GNP 500 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1TQ6 _atom_sites.fract_transf_matrix[1][1] 0.014077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 3 GNP A 1 500 500 GNP GNP . D 4 HOH A 1 502 1 HOH HOH . D 4 HOH A 2 503 2 HOH HOH . D 4 HOH A 3 504 3 HOH HOH . D 4 HOH A 4 505 4 HOH HOH . D 4 HOH A 5 506 5 HOH HOH . D 4 HOH A 6 507 6 HOH HOH . D 4 HOH A 7 508 7 HOH HOH . D 4 HOH A 8 509 8 HOH HOH . D 4 HOH A 9 510 9 HOH HOH . D 4 HOH A 10 511 10 HOH HOH . D 4 HOH A 11 512 11 HOH HOH . D 4 HOH A 12 513 12 HOH HOH . D 4 HOH A 13 514 13 HOH HOH . D 4 HOH A 14 515 14 HOH HOH . D 4 HOH A 15 516 15 HOH HOH . D 4 HOH A 16 517 16 HOH HOH . D 4 HOH A 17 518 17 HOH HOH . D 4 HOH A 18 519 18 HOH HOH . D 4 HOH A 19 520 19 HOH HOH . D 4 HOH A 20 521 20 HOH HOH . D 4 HOH A 21 522 21 HOH HOH . D 4 HOH A 22 523 22 HOH HOH . D 4 HOH A 23 524 23 HOH HOH . D 4 HOH A 24 525 24 HOH HOH . D 4 HOH A 25 526 25 HOH HOH . D 4 HOH A 26 527 26 HOH HOH . D 4 HOH A 27 528 27 HOH HOH . D 4 HOH A 28 529 28 HOH HOH . D 4 HOH A 29 530 29 HOH HOH . D 4 HOH A 30 531 30 HOH HOH . D 4 HOH A 31 532 31 HOH HOH . D 4 HOH A 32 533 32 HOH HOH . D 4 HOH A 33 534 33 HOH HOH . D 4 HOH A 34 535 34 HOH HOH . D 4 HOH A 35 536 35 HOH HOH . D 4 HOH A 36 537 36 HOH HOH . D 4 HOH A 37 538 37 HOH HOH . D 4 HOH A 38 539 38 HOH HOH . D 4 HOH A 39 540 39 HOH HOH . D 4 HOH A 40 541 40 HOH HOH . D 4 HOH A 41 542 41 HOH HOH . D 4 HOH A 42 543 42 HOH HOH . D 4 HOH A 43 544 43 HOH HOH . D 4 HOH A 44 545 44 HOH HOH . D 4 HOH A 45 546 45 HOH HOH . D 4 HOH A 46 547 46 HOH HOH . D 4 HOH A 47 548 47 HOH HOH . D 4 HOH A 48 549 48 HOH HOH . D 4 HOH A 49 550 49 HOH HOH . D 4 HOH A 50 551 50 HOH HOH . D 4 HOH A 51 552 51 HOH HOH . D 4 HOH A 52 553 52 HOH HOH . D 4 HOH A 53 554 53 HOH HOH . D 4 HOH A 54 555 54 HOH HOH . D 4 HOH A 55 556 55 HOH HOH . D 4 HOH A 56 557 56 HOH HOH . D 4 HOH A 57 558 57 HOH HOH . D 4 HOH A 58 559 58 HOH HOH . D 4 HOH A 59 560 59 HOH HOH . D 4 HOH A 60 561 60 HOH HOH . D 4 HOH A 61 562 61 HOH HOH . D 4 HOH A 62 563 62 HOH HOH . D 4 HOH A 63 564 63 HOH HOH . D 4 HOH A 64 565 64 HOH HOH . D 4 HOH A 65 566 65 HOH HOH . D 4 HOH A 66 567 66 HOH HOH . D 4 HOH A 67 568 67 HOH HOH . D 4 HOH A 68 569 68 HOH HOH . D 4 HOH A 69 570 69 HOH HOH . D 4 HOH A 70 571 70 HOH HOH . D 4 HOH A 71 572 71 HOH HOH . D 4 HOH A 72 573 72 HOH HOH . D 4 HOH A 73 574 73 HOH HOH . D 4 HOH A 74 575 74 HOH HOH . D 4 HOH A 75 576 75 HOH HOH . D 4 HOH A 76 577 76 HOH HOH . D 4 HOH A 77 578 77 HOH HOH . D 4 HOH A 78 579 78 HOH HOH . D 4 HOH A 79 580 79 HOH HOH . D 4 HOH A 80 581 80 HOH HOH . D 4 HOH A 81 582 81 HOH HOH . D 4 HOH A 82 583 82 HOH HOH . D 4 HOH A 83 584 83 HOH HOH . D 4 HOH A 84 585 84 HOH HOH . D 4 HOH A 85 586 85 HOH HOH . D 4 HOH A 86 587 86 HOH HOH . D 4 HOH A 87 588 87 HOH HOH . D 4 HOH A 88 589 88 HOH HOH . D 4 HOH A 89 590 89 HOH HOH . D 4 HOH A 90 591 90 HOH HOH . D 4 HOH A 91 592 91 HOH HOH . D 4 HOH A 92 593 92 HOH HOH . D 4 HOH A 93 594 93 HOH HOH . D 4 HOH A 94 595 94 HOH HOH . D 4 HOH A 95 596 95 HOH HOH . D 4 HOH A 96 597 96 HOH HOH . D 4 HOH A 97 598 97 HOH HOH . D 4 HOH A 98 599 98 HOH HOH . D 4 HOH A 99 600 99 HOH HOH . D 4 HOH A 100 601 100 HOH HOH . D 4 HOH A 101 602 101 HOH HOH . D 4 HOH A 102 603 102 HOH HOH . D 4 HOH A 103 604 103 HOH HOH . D 4 HOH A 104 605 104 HOH HOH . D 4 HOH A 105 606 105 HOH HOH . D 4 HOH A 106 607 106 HOH HOH . D 4 HOH A 107 608 107 HOH HOH . D 4 HOH A 108 609 108 HOH HOH . D 4 HOH A 109 610 109 HOH HOH . D 4 HOH A 110 611 110 HOH HOH . D 4 HOH A 111 612 111 HOH HOH . D 4 HOH A 112 613 112 HOH HOH . D 4 HOH A 113 614 113 HOH HOH . D 4 HOH A 114 615 114 HOH HOH . D 4 HOH A 115 616 115 HOH HOH . D 4 HOH A 116 617 116 HOH HOH . D 4 HOH A 117 618 117 HOH HOH . D 4 HOH A 118 619 118 HOH HOH . D 4 HOH A 119 620 119 HOH HOH . D 4 HOH A 120 621 120 HOH HOH . D 4 HOH A 121 622 121 HOH HOH . D 4 HOH A 122 623 122 HOH HOH . D 4 HOH A 123 624 123 HOH HOH . D 4 HOH A 124 625 124 HOH HOH . D 4 HOH A 125 626 125 HOH HOH . D 4 HOH A 126 627 126 HOH HOH . D 4 HOH A 127 628 127 HOH HOH . D 4 HOH A 128 629 128 HOH HOH . D 4 HOH A 129 630 129 HOH HOH . D 4 HOH A 130 631 130 HOH HOH . D 4 HOH A 131 632 131 HOH HOH . D 4 HOH A 132 633 132 HOH HOH . D 4 HOH A 133 634 133 HOH HOH . D 4 HOH A 134 635 134 HOH HOH . D 4 HOH A 135 636 135 HOH HOH . D 4 HOH A 136 637 136 HOH HOH . D 4 HOH A 137 638 137 HOH HOH . D 4 HOH A 138 639 138 HOH HOH . D 4 HOH A 139 640 139 HOH HOH . D 4 HOH A 140 641 140 HOH HOH . D 4 HOH A 141 642 141 HOH HOH . D 4 HOH A 142 643 142 HOH HOH . D 4 HOH A 143 644 143 HOH HOH . D 4 HOH A 144 645 144 HOH HOH . D 4 HOH A 145 646 145 HOH HOH . D 4 HOH A 146 647 146 HOH HOH . D 4 HOH A 147 648 147 HOH HOH . D 4 HOH A 148 649 148 HOH HOH . D 4 HOH A 149 650 149 HOH HOH . D 4 HOH A 150 651 150 HOH HOH . D 4 HOH A 151 652 151 HOH HOH . D 4 HOH A 152 653 152 HOH HOH . D 4 HOH A 153 654 153 HOH HOH . D 4 HOH A 154 655 154 HOH HOH . D 4 HOH A 155 656 155 HOH HOH . D 4 HOH A 156 657 156 HOH HOH . D 4 HOH A 157 658 157 HOH HOH . D 4 HOH A 158 659 158 HOH HOH . D 4 HOH A 159 660 159 HOH HOH . D 4 HOH A 160 661 160 HOH HOH . D 4 HOH A 161 662 161 HOH HOH . D 4 HOH A 162 663 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 9.607 25.779 40.287 0.8 78.61 ? PG GNP 500 A 1 HETATM 2 O O1G GNP . . . C 3 8.967 24.313 40.271 0.8 77.51 ? O1G GNP 500 A 1 HETATM 3 O O2G GNP . . . C 3 10.112 26.032 38.961 0.8 77.14 ? O2G GNP 500 A 1 HETATM 4 O O3G GNP . . . C 3 8.447 26.749 40.7 0.8 75.7 ? O3G GNP 500 A 1 HETATM 5 N N3B GNP . . . C 3 10.705 25.727 41.457 0.8 73.9 ? N3B GNP 500 A 1 HETATM 6 P PB GNP . . . C 3 12.061 24.672 41.134 0.8 72.12 ? PB GNP 500 A 1 HETATM 7 O O1B GNP . . . C 3 11.63 23.245 41.072 0.8 71.88 ? O1B GNP 500 A 1 HETATM 8 O O2B GNP . . . C 3 12.604 24.988 39.983 0.8 70.17 ? O2B GNP 500 A 1 HETATM 9 O O3A GNP . . . C 3 13.1 24.636 42.268 0.8 73.18 ? O3A GNP 500 A 1 HETATM 10 P PA GNP . . . C 3 14.747 24.815 42.085 0.8 75.91 ? PA GNP 500 A 1 HETATM 11 O O1A GNP . . . C 3 15.134 23.966 40.896 0.8 73.76 ? O1A GNP 500 A 1 HETATM 12 O O2A GNP . . . C 3 14.89 26.324 42.093 0.8 76.89 ? O2A GNP 500 A 1 HETATM 13 O O5' GNP . . . C 3 15.216 24.259 43.439 0.8 74.67 ? O5' GNP 500 A 1 HETATM 14 C C5' GNP . . . C 3 15.623 25.248 44.405 0.8 73.05 ? C5' GNP 500 A 1 HETATM 15 C C4' GNP . . . C 3 16.581 24.751 45.324 0.8 73.32 ? C4' GNP 500 A 1 HETATM 16 O O4' GNP . . . C 3 16.62 23.225 45.201 0.8 74.24 ? O4' GNP 500 A 1 HETATM 17 C C3' GNP . . . C 3 18.109 25.064 45.188 0.8 73.22 ? C3' GNP 500 A 1 HETATM 18 O O3' GNP . . . C 3 18.371 25.238 46.679 0.8 73.33 ? O3' GNP 500 A 1 HETATM 19 C C2' GNP . . . C 3 18.93 23.728 44.851 0.8 74.61 ? C2' GNP 500 A 1 HETATM 20 O O2' GNP . . . C 3 19.97 23.509 45.921 0.8 77.11 ? O2' GNP 500 A 1 HETATM 21 C C1' GNP . . . C 3 17.937 22.582 45.108 0.8 73.67 ? C1' GNP 500 A 1 HETATM 22 N N9 GNP . . . C 3 18.018 21.44 44.112 0.8 73.98 ? N9 GNP 500 A 1 HETATM 23 C C8 GNP . . . C 3 17.382 21.47 42.76 0.8 73.35 ? C8 GNP 500 A 1 HETATM 24 N N7 GNP . . . C 3 17.863 20.17 42.5 0.8 73.81 ? N7 GNP 500 A 1 HETATM 25 C C5 GNP . . . C 3 18.611 19.441 43.378 0.8 73.36 ? C5 GNP 500 A 1 HETATM 26 C C6 GNP . . . C 3 19.323 18.233 43.731 0.8 72.49 ? C6 GNP 500 A 1 HETATM 27 O O6 GNP . . . C 3 19.299 17.286 42.742 0.8 72.06 ? O6 GNP 500 A 1 HETATM 28 N N1 GNP . . . C 3 19.977 17.989 44.9 0.8 73.02 ? N1 GNP 500 A 1 HETATM 29 C C2 GNP . . . C 3 19.93 19.116 45.918 0.8 73.01 ? C2 GNP 500 A 1 HETATM 30 N N2 GNP . . . C 3 20.545 18.853 47.002 0.8 71.74 ? N2 GNP 500 A 1 HETATM 31 N N3 GNP . . . C 3 19.318 20.162 45.625 0.8 73.75 ? N3 GNP 500 A 1 HETATM 32 C C4 GNP . . . C 3 18.701 20.372 44.497 0.8 73.85 ? C4 GNP 500 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #