data_1TQ7 # _model_server_result.job_id MnoPDc0dVEXLvSKGYeTtgw _model_server_result.datetime_utc '2024-11-21 23:42:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 1TQ7 # _exptl.entry_id 1TQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.986 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TQ7 _cell.length_a 51.11 _cell.length_b 73.83 _cell.length_c 87.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 B NE2 HIS 43 B HIS 57 1_555 E C3 0G6 . B 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? covale ? covale2 B ND2 ASN 53 B ASN 60 1_555 F C1 NAG . B NAG 600 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale3 B OG SER 205 B SER 195 1_555 E C2 0G6 . B 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc1 A OE1 GLU 35 A GLU 14 1_555 C ZN ZN . A ZN 401 1_555 E ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 C ZN ZN . A ZN 401 1_555 I O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 D ZN ZN . A ZN 402 1_555 B NE2 HIS 116 B HIS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 B ND1 HIS 66 B HIS 71 1_555 G ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'C21 H34 Cl N6 O3 1' _chem_comp.formula_weight 453.986 _chem_comp.id 0G6 _chem_comp.mon_nstd_flag . _chem_comp.name D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms PPACK # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0G6 sing 1 n n N H 0G6 sing 2 n n N H2 0G6 sing 3 n n CA C 0G6 sing 4 n n CA CB 0G6 sing 5 n n CA HA 0G6 sing 6 n n C O 0G6 doub 7 n n C N1 0G6 sing 8 n n CB CG 0G6 sing 9 n n CB HB2 0G6 sing 10 n n CB HB3 0G6 sing 11 n n CG CD1 0G6 doub 12 n y CG CD2 0G6 sing 13 n y CD1 CE1 0G6 sing 14 n y CD1 HD1 0G6 sing 15 n n CD2 CE2 0G6 doub 16 n y CD2 HD2 0G6 sing 17 n n CE1 CZ 0G6 doub 18 n y CE1 HE1 0G6 sing 19 n n CE2 CZ 0G6 sing 20 n y CE2 HE2 0G6 sing 21 n n CZ HZ 0G6 sing 22 n n N1 CA1 0G6 sing 23 n n N1 CD 0G6 sing 24 n n CA1 C1 0G6 sing 25 n n CA1 CB1 0G6 sing 26 n n CA1 HA1 0G6 sing 27 n n C1 O1 0G6 doub 28 n n C1 N2 0G6 sing 29 n n CB1 CG1 0G6 sing 30 n n CB1 HB21 0G6 sing 31 n n CB1 HB31 0G6 sing 32 n n CG1 CD 0G6 sing 33 n n CG1 HG2 0G6 sing 34 n n CG1 HG3 0G6 sing 35 n n CD HD21 0G6 sing 36 n n CD HD3 0G6 sing 37 n n N2 CA2 0G6 sing 38 n n N2 H1 0G6 sing 39 n n CA2 C2 0G6 sing 40 n n CA2 CB2 0G6 sing 41 n n CA2 HA2 0G6 sing 42 n n C2 O2 0G6 sing 43 n n C2 C3 0G6 sing 44 n n CB2 CG2 0G6 sing 45 n n CB2 HB22 0G6 sing 46 n n CB2 HB32 0G6 sing 47 n n CG2 CD3 0G6 sing 48 n n CG2 HG21 0G6 sing 49 n n CG2 HG31 0G6 sing 50 n n CD3 NE 0G6 sing 51 n n CD3 HD22 0G6 sing 52 n n CD3 HD31 0G6 sing 53 n n NE CZ1 0G6 sing 54 n n NE HE 0G6 sing 55 n n CZ1 NH1 0G6 sing 56 n n CZ1 NH2 0G6 doub 57 n n NH1 HH11 0G6 sing 58 n n NH1 HH12 0G6 sing 59 n n NH2 HH21 0G6 sing 60 n n NH2 HH22 0G6 sing 61 n n C3 H11 0G6 sing 62 n n C3 H21 0G6 sing 63 n n CL C3 0G6 sing 64 n n C2 H33 0G6 sing 65 n n O2 H34 0G6 sing 66 n n # _atom_sites.entry_id 1TQ7 _atom_sites.fract_transf_matrix[1][1] 0.019566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 3 ZN A 1 402 402 ZN ZN . E 4 0G6 B 1 301 301 0G6 DPN . F 5 NAG B 1 600 600 NAG NAG . G 3 ZN B 1 403 403 ZN ZN . H 6 HOH A 1 505 505 HOH HOH . H 6 HOH A 2 700 700 HOH HOH . H 6 HOH A 3 701 701 HOH HOH . H 6 HOH A 4 714 714 HOH HOH . H 6 HOH A 5 719 719 HOH HOH . H 6 HOH A 6 736 736 HOH HOH . H 6 HOH A 7 741 741 HOH HOH . H 6 HOH A 8 742 742 HOH HOH . H 6 HOH A 9 744 744 HOH HOH . H 6 HOH A 10 753 753 HOH HOH . H 6 HOH A 11 758 758 HOH HOH . H 6 HOH A 12 787 787 HOH HOH . H 6 HOH A 13 790 790 HOH HOH . H 6 HOH A 14 792 792 HOH HOH . H 6 HOH A 15 793 793 HOH HOH . H 6 HOH A 16 800 800 HOH HOH . H 6 HOH A 17 804 804 HOH HOH . H 6 HOH A 18 807 807 HOH HOH . I 6 HOH B 1 501 501 HOH HOH . I 6 HOH B 2 502 502 HOH HOH . I 6 HOH B 3 503 503 HOH HOH . I 6 HOH B 4 504 504 HOH HOH . I 6 HOH B 5 506 506 HOH HOH . I 6 HOH B 6 507 507 HOH HOH . I 6 HOH B 7 508 508 HOH HOH . I 6 HOH B 8 509 509 HOH HOH . I 6 HOH B 9 510 510 HOH HOH . I 6 HOH B 10 511 511 HOH HOH . I 6 HOH B 11 512 512 HOH HOH . I 6 HOH B 12 513 513 HOH HOH . I 6 HOH B 13 514 514 HOH HOH . I 6 HOH B 14 515 515 HOH HOH . I 6 HOH B 15 516 516 HOH HOH . I 6 HOH B 16 517 517 HOH HOH . I 6 HOH B 17 518 518 HOH HOH . I 6 HOH B 18 519 519 HOH HOH . I 6 HOH B 19 520 520 HOH HOH . I 6 HOH B 20 521 521 HOH HOH . I 6 HOH B 21 522 522 HOH HOH . I 6 HOH B 22 523 523 HOH HOH . I 6 HOH B 23 524 524 HOH HOH . I 6 HOH B 24 525 525 HOH HOH . I 6 HOH B 25 526 526 HOH HOH . I 6 HOH B 26 527 527 HOH HOH . I 6 HOH B 27 528 528 HOH HOH . I 6 HOH B 28 529 529 HOH HOH . I 6 HOH B 29 530 530 HOH HOH . I 6 HOH B 30 531 531 HOH HOH . I 6 HOH B 31 532 532 HOH HOH . I 6 HOH B 32 533 533 HOH HOH . I 6 HOH B 33 534 534 HOH HOH . I 6 HOH B 34 535 535 HOH HOH . I 6 HOH B 35 536 536 HOH HOH . I 6 HOH B 36 537 537 HOH HOH . I 6 HOH B 37 538 538 HOH HOH . I 6 HOH B 38 539 539 HOH HOH . I 6 HOH B 39 540 540 HOH HOH . I 6 HOH B 40 541 541 HOH HOH . I 6 HOH B 41 542 542 HOH HOH . I 6 HOH B 42 543 543 HOH HOH . I 6 HOH B 43 544 544 HOH HOH . I 6 HOH B 44 702 702 HOH HOH . I 6 HOH B 45 703 703 HOH HOH . I 6 HOH B 46 704 704 HOH HOH . I 6 HOH B 47 705 705 HOH HOH . I 6 HOH B 48 707 707 HOH HOH . I 6 HOH B 49 708 708 HOH HOH . I 6 HOH B 50 709 709 HOH HOH . I 6 HOH B 51 710 710 HOH HOH . I 6 HOH B 52 711 711 HOH HOH . I 6 HOH B 53 712 712 HOH HOH . I 6 HOH B 54 713 713 HOH HOH . I 6 HOH B 55 715 715 HOH HOH . I 6 HOH B 56 716 716 HOH HOH . I 6 HOH B 57 717 717 HOH HOH . I 6 HOH B 58 718 718 HOH HOH . I 6 HOH B 59 720 720 HOH HOH . I 6 HOH B 60 721 721 HOH HOH . I 6 HOH B 61 722 722 HOH HOH . I 6 HOH B 62 723 723 HOH HOH . I 6 HOH B 63 724 724 HOH HOH . I 6 HOH B 64 725 725 HOH HOH . I 6 HOH B 65 726 726 HOH HOH . I 6 HOH B 66 727 727 HOH HOH . I 6 HOH B 67 728 728 HOH HOH . I 6 HOH B 68 729 729 HOH HOH . I 6 HOH B 69 730 730 HOH HOH . I 6 HOH B 70 731 731 HOH HOH . I 6 HOH B 71 732 732 HOH HOH . I 6 HOH B 72 733 733 HOH HOH . I 6 HOH B 73 734 734 HOH HOH . I 6 HOH B 74 735 735 HOH HOH . I 6 HOH B 75 737 737 HOH HOH . I 6 HOH B 76 738 738 HOH HOH . I 6 HOH B 77 739 739 HOH HOH . I 6 HOH B 78 740 740 HOH HOH . I 6 HOH B 79 743 743 HOH HOH . I 6 HOH B 80 745 745 HOH HOH . I 6 HOH B 81 746 746 HOH HOH . I 6 HOH B 82 747 747 HOH HOH . I 6 HOH B 83 748 748 HOH HOH . I 6 HOH B 84 749 749 HOH HOH . I 6 HOH B 85 750 750 HOH HOH . I 6 HOH B 86 751 751 HOH HOH . I 6 HOH B 87 752 752 HOH HOH . I 6 HOH B 88 754 754 HOH HOH . I 6 HOH B 89 755 755 HOH HOH . I 6 HOH B 90 756 756 HOH HOH . I 6 HOH B 91 757 757 HOH HOH . I 6 HOH B 92 759 759 HOH HOH . I 6 HOH B 93 760 760 HOH HOH . I 6 HOH B 94 761 761 HOH HOH . I 6 HOH B 95 762 762 HOH HOH . I 6 HOH B 96 763 763 HOH HOH . I 6 HOH B 97 764 764 HOH HOH . I 6 HOH B 98 765 765 HOH HOH . I 6 HOH B 99 766 766 HOH HOH . I 6 HOH B 100 767 767 HOH HOH . I 6 HOH B 101 768 768 HOH HOH . I 6 HOH B 102 769 769 HOH HOH . I 6 HOH B 103 780 780 HOH HOH . I 6 HOH B 104 781 781 HOH HOH . I 6 HOH B 105 782 782 HOH HOH . I 6 HOH B 106 783 783 HOH HOH . I 6 HOH B 107 784 784 HOH HOH . I 6 HOH B 108 785 785 HOH HOH . I 6 HOH B 109 786 786 HOH HOH . I 6 HOH B 110 788 788 HOH HOH . I 6 HOH B 111 789 789 HOH HOH . I 6 HOH B 112 791 791 HOH HOH . I 6 HOH B 113 794 794 HOH HOH . I 6 HOH B 114 795 795 HOH HOH . I 6 HOH B 115 796 796 HOH HOH . I 6 HOH B 116 797 797 HOH HOH . I 6 HOH B 117 801 801 HOH HOH . I 6 HOH B 118 802 802 HOH HOH . I 6 HOH B 119 803 803 HOH HOH . I 6 HOH B 120 805 805 HOH HOH . I 6 HOH B 121 806 806 HOH HOH . I 6 HOH B 122 808 808 HOH HOH . I 6 HOH B 123 809 809 HOH HOH . I 6 HOH B 124 810 810 HOH HOH . I 6 HOH B 125 811 811 HOH HOH . I 6 HOH B 126 812 812 HOH HOH . I 6 HOH B 127 813 813 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0G6 . . . E 4 27.636 32.321 23.951 1 19.91 ? N 0G6 301 B 1 HETATM 2 C CA 0G6 . . . E 4 27.36 31.66 22.677 1 22.14 ? CA 0G6 301 B 1 HETATM 3 C C 0G6 . . . E 4 26.435 32.525 21.81 1 22.21 ? C 0G6 301 B 1 HETATM 4 O O 0G6 . . . E 4 26.79 33.647 21.423 1 21.95 ? O 0G6 301 B 1 HETATM 5 C CB 0G6 . . . E 4 28.666 31.388 21.928 1 21.4 ? CB 0G6 301 B 1 HETATM 6 C CG 0G6 . . . E 4 28.481 30.597 20.67 1 24.12 ? CG 0G6 301 B 1 HETATM 7 C CD1 0G6 . . . E 4 27.957 29.31 20.721 1 24.81 ? CD1 0G6 301 B 1 HETATM 8 C CD2 0G6 . . . E 4 28.792 31.146 19.43 1 24.38 ? CD2 0G6 301 B 1 HETATM 9 C CE1 0G6 . . . E 4 27.741 28.577 19.556 1 25.73 ? CE1 0G6 301 B 1 HETATM 10 C CE2 0G6 . . . E 4 28.58 30.422 18.255 1 26.24 ? CE2 0G6 301 B 1 HETATM 11 C CZ 0G6 . . . E 4 28.051 29.135 18.319 1 26.52 ? CZ 0G6 301 B 1 HETATM 12 N N1 0G6 . . . E 4 25.241 32.005 21.479 1 21.04 ? N1 0G6 301 B 1 HETATM 13 C CA1 0G6 . . . E 4 24.303 32.781 20.66 1 20.27 ? CA1 0G6 301 B 1 HETATM 14 C C1 0G6 . . . E 4 23.783 33.963 21.481 1 20.34 ? C1 0G6 301 B 1 HETATM 15 O O1 0G6 . . . E 4 23.671 33.871 22.703 1 20.23 ? O1 0G6 301 B 1 HETATM 16 C CB1 0G6 . . . E 4 23.19 31.778 20.35 1 18.36 ? CB1 0G6 301 B 1 HETATM 17 C CG1 0G6 . . . E 4 23.872 30.448 20.444 1 21.35 ? CG1 0G6 301 B 1 HETATM 18 C CD 0G6 . . . E 4 24.778 30.614 21.64 1 19.9 ? CD 0G6 301 B 1 HETATM 19 N N2 0G6 . . . E 4 23.473 35.068 20.812 1 21.2 ? N2 0G6 301 B 1 HETATM 20 C CA2 0G6 . . . E 4 22.956 36.245 21.497 1 23.27 ? CA2 0G6 301 B 1 HETATM 21 C C2 0G6 . . . E 4 21.531 36.496 21.051 1 25.18 ? C2 0G6 301 B 1 HETATM 22 O O2 0G6 . . . E 4 20.809 37.231 21.752 1 26.77 ? O2 0G6 301 B 1 HETATM 23 C CB2 0G6 . . . E 4 23.825 37.471 21.206 1 20.54 ? CB2 0G6 301 B 1 HETATM 24 C CG2 0G6 . . . E 4 25.154 37.446 21.935 1 19.01 ? CG2 0G6 301 B 1 HETATM 25 C CD3 0G6 . . . E 4 25.973 38.711 21.731 1 14.95 ? CD3 0G6 301 B 1 HETATM 26 N NE 0G6 . . . E 4 27.088 38.73 22.673 1 19.23 ? NE 0G6 301 B 1 HETATM 27 C CZ1 0G6 . . . E 4 28.066 39.631 22.682 1 21.47 ? CZ1 0G6 301 B 1 HETATM 28 N NH1 0G6 . . . E 4 28.087 40.612 21.785 1 22.72 ? NH1 0G6 301 B 1 HETATM 29 N NH2 0G6 . . . E 4 29.021 39.556 23.601 1 21.23 ? NH2 0G6 301 B 1 HETATM 30 C C3 0G6 . . . E 4 20.772 34.932 20.633 1 29.26 ? C3 0G6 301 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #