data_1TQ7 # _model_server_result.job_id Ij1utTqVSzdV71BaKHZLLA _model_server_result.datetime_utc '2024-11-24 19:10:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 1TQ7 # _exptl.entry_id 1TQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TQ7 _cell.length_a 51.11 _cell.length_b 73.83 _cell.length_c 87.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 B NE2 HIS 43 B HIS 57 1_555 E C3 0G6 . B 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.639 ? covale ? covale2 B ND2 ASN 53 B ASN 60 1_555 F C1 NAG . B NAG 600 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.627 ? covale ? covale3 B OG SER 205 B SER 195 1_555 E C2 0G6 . B 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc1 A OE1 GLU 35 A GLU 14 1_555 C ZN ZN . A ZN 401 1_555 E ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 C ZN ZN . A ZN 401 1_555 I O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 D ZN ZN . A ZN 402 1_555 B NE2 HIS 116 B HIS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc4 B ND1 HIS 66 B HIS 71 1_555 G ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 303 n n C1 O1 NAG sing 304 n n C1 O5 NAG sing 305 n n C1 H1 NAG sing 306 n n C2 C3 NAG sing 307 n n C2 N2 NAG sing 308 n n C2 H2 NAG sing 309 n n C3 C4 NAG sing 310 n n C3 O3 NAG sing 311 n n C3 H3 NAG sing 312 n n C4 C5 NAG sing 313 n n C4 O4 NAG sing 314 n n C4 H4 NAG sing 315 n n C5 C6 NAG sing 316 n n C5 O5 NAG sing 317 n n C5 H5 NAG sing 318 n n C6 O6 NAG sing 319 n n C6 H61 NAG sing 320 n n C6 H62 NAG sing 321 n n C7 C8 NAG sing 322 n n C7 N2 NAG sing 323 n n C7 O7 NAG doub 324 n n C8 H81 NAG sing 325 n n C8 H82 NAG sing 326 n n C8 H83 NAG sing 327 n n N2 HN2 NAG sing 328 n n O1 HO1 NAG sing 329 n n O3 HO3 NAG sing 330 n n O4 HO4 NAG sing 331 n n O6 HO6 NAG sing 332 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1TQ7 _atom_sites.fract_transf_matrix[1][1] 0.019566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 3 ZN A 1 402 402 ZN ZN . E 4 0G6 B 1 301 301 0G6 DPN . F 5 NAG B 1 600 600 NAG NAG . G 3 ZN B 1 403 403 ZN ZN . H 6 HOH A 1 505 505 HOH HOH . H 6 HOH A 2 700 700 HOH HOH . H 6 HOH A 3 701 701 HOH HOH . H 6 HOH A 4 714 714 HOH HOH . H 6 HOH A 5 719 719 HOH HOH . H 6 HOH A 6 736 736 HOH HOH . H 6 HOH A 7 741 741 HOH HOH . H 6 HOH A 8 742 742 HOH HOH . H 6 HOH A 9 744 744 HOH HOH . H 6 HOH A 10 753 753 HOH HOH . H 6 HOH A 11 758 758 HOH HOH . H 6 HOH A 12 787 787 HOH HOH . H 6 HOH A 13 790 790 HOH HOH . H 6 HOH A 14 792 792 HOH HOH . H 6 HOH A 15 793 793 HOH HOH . H 6 HOH A 16 800 800 HOH HOH . H 6 HOH A 17 804 804 HOH HOH . H 6 HOH A 18 807 807 HOH HOH . I 6 HOH B 1 501 501 HOH HOH . I 6 HOH B 2 502 502 HOH HOH . I 6 HOH B 3 503 503 HOH HOH . I 6 HOH B 4 504 504 HOH HOH . I 6 HOH B 5 506 506 HOH HOH . I 6 HOH B 6 507 507 HOH HOH . I 6 HOH B 7 508 508 HOH HOH . I 6 HOH B 8 509 509 HOH HOH . I 6 HOH B 9 510 510 HOH HOH . I 6 HOH B 10 511 511 HOH HOH . I 6 HOH B 11 512 512 HOH HOH . I 6 HOH B 12 513 513 HOH HOH . I 6 HOH B 13 514 514 HOH HOH . I 6 HOH B 14 515 515 HOH HOH . I 6 HOH B 15 516 516 HOH HOH . I 6 HOH B 16 517 517 HOH HOH . I 6 HOH B 17 518 518 HOH HOH . I 6 HOH B 18 519 519 HOH HOH . I 6 HOH B 19 520 520 HOH HOH . I 6 HOH B 20 521 521 HOH HOH . I 6 HOH B 21 522 522 HOH HOH . I 6 HOH B 22 523 523 HOH HOH . I 6 HOH B 23 524 524 HOH HOH . I 6 HOH B 24 525 525 HOH HOH . I 6 HOH B 25 526 526 HOH HOH . I 6 HOH B 26 527 527 HOH HOH . I 6 HOH B 27 528 528 HOH HOH . I 6 HOH B 28 529 529 HOH HOH . I 6 HOH B 29 530 530 HOH HOH . I 6 HOH B 30 531 531 HOH HOH . I 6 HOH B 31 532 532 HOH HOH . I 6 HOH B 32 533 533 HOH HOH . I 6 HOH B 33 534 534 HOH HOH . I 6 HOH B 34 535 535 HOH HOH . I 6 HOH B 35 536 536 HOH HOH . I 6 HOH B 36 537 537 HOH HOH . I 6 HOH B 37 538 538 HOH HOH . I 6 HOH B 38 539 539 HOH HOH . I 6 HOH B 39 540 540 HOH HOH . I 6 HOH B 40 541 541 HOH HOH . I 6 HOH B 41 542 542 HOH HOH . I 6 HOH B 42 543 543 HOH HOH . I 6 HOH B 43 544 544 HOH HOH . I 6 HOH B 44 702 702 HOH HOH . I 6 HOH B 45 703 703 HOH HOH . I 6 HOH B 46 704 704 HOH HOH . I 6 HOH B 47 705 705 HOH HOH . I 6 HOH B 48 707 707 HOH HOH . I 6 HOH B 49 708 708 HOH HOH . I 6 HOH B 50 709 709 HOH HOH . I 6 HOH B 51 710 710 HOH HOH . I 6 HOH B 52 711 711 HOH HOH . I 6 HOH B 53 712 712 HOH HOH . I 6 HOH B 54 713 713 HOH HOH . I 6 HOH B 55 715 715 HOH HOH . I 6 HOH B 56 716 716 HOH HOH . I 6 HOH B 57 717 717 HOH HOH . I 6 HOH B 58 718 718 HOH HOH . I 6 HOH B 59 720 720 HOH HOH . I 6 HOH B 60 721 721 HOH HOH . I 6 HOH B 61 722 722 HOH HOH . I 6 HOH B 62 723 723 HOH HOH . I 6 HOH B 63 724 724 HOH HOH . I 6 HOH B 64 725 725 HOH HOH . I 6 HOH B 65 726 726 HOH HOH . I 6 HOH B 66 727 727 HOH HOH . I 6 HOH B 67 728 728 HOH HOH . I 6 HOH B 68 729 729 HOH HOH . I 6 HOH B 69 730 730 HOH HOH . I 6 HOH B 70 731 731 HOH HOH . I 6 HOH B 71 732 732 HOH HOH . I 6 HOH B 72 733 733 HOH HOH . I 6 HOH B 73 734 734 HOH HOH . I 6 HOH B 74 735 735 HOH HOH . I 6 HOH B 75 737 737 HOH HOH . I 6 HOH B 76 738 738 HOH HOH . I 6 HOH B 77 739 739 HOH HOH . I 6 HOH B 78 740 740 HOH HOH . I 6 HOH B 79 743 743 HOH HOH . I 6 HOH B 80 745 745 HOH HOH . I 6 HOH B 81 746 746 HOH HOH . I 6 HOH B 82 747 747 HOH HOH . I 6 HOH B 83 748 748 HOH HOH . I 6 HOH B 84 749 749 HOH HOH . I 6 HOH B 85 750 750 HOH HOH . I 6 HOH B 86 751 751 HOH HOH . I 6 HOH B 87 752 752 HOH HOH . I 6 HOH B 88 754 754 HOH HOH . I 6 HOH B 89 755 755 HOH HOH . I 6 HOH B 90 756 756 HOH HOH . I 6 HOH B 91 757 757 HOH HOH . I 6 HOH B 92 759 759 HOH HOH . I 6 HOH B 93 760 760 HOH HOH . I 6 HOH B 94 761 761 HOH HOH . I 6 HOH B 95 762 762 HOH HOH . I 6 HOH B 96 763 763 HOH HOH . I 6 HOH B 97 764 764 HOH HOH . I 6 HOH B 98 765 765 HOH HOH . I 6 HOH B 99 766 766 HOH HOH . I 6 HOH B 100 767 767 HOH HOH . I 6 HOH B 101 768 768 HOH HOH . I 6 HOH B 102 769 769 HOH HOH . I 6 HOH B 103 780 780 HOH HOH . I 6 HOH B 104 781 781 HOH HOH . I 6 HOH B 105 782 782 HOH HOH . I 6 HOH B 106 783 783 HOH HOH . I 6 HOH B 107 784 784 HOH HOH . I 6 HOH B 108 785 785 HOH HOH . I 6 HOH B 109 786 786 HOH HOH . I 6 HOH B 110 788 788 HOH HOH . I 6 HOH B 111 789 789 HOH HOH . I 6 HOH B 112 791 791 HOH HOH . I 6 HOH B 113 794 794 HOH HOH . I 6 HOH B 114 795 795 HOH HOH . I 6 HOH B 115 796 796 HOH HOH . I 6 HOH B 116 797 797 HOH HOH . I 6 HOH B 117 801 801 HOH HOH . I 6 HOH B 118 802 802 HOH HOH . I 6 HOH B 119 803 803 HOH HOH . I 6 HOH B 120 805 805 HOH HOH . I 6 HOH B 121 806 806 HOH HOH . I 6 HOH B 122 808 808 HOH HOH . I 6 HOH B 123 809 809 HOH HOH . I 6 HOH B 124 810 810 HOH HOH . I 6 HOH B 125 811 811 HOH HOH . I 6 HOH B 126 812 812 HOH HOH . I 6 HOH B 127 813 813 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 10.884 22.948 13.059 1 59.09 ? C1 NAG 600 B 1 HETATM 2 C C2 NAG . . . F 5 11.913 22.003 12.786 1 59.09 ? C2 NAG 600 B 1 HETATM 3 C C3 NAG . . . F 5 11.4 21.157 11.6 1 60.25 ? C3 NAG 600 B 1 HETATM 4 C C4 NAG . . . F 5 10.066 20.489 12.046 1 60.48 ? C4 NAG 600 B 1 HETATM 5 C C5 NAG . . . F 5 9.114 21.591 12.383 1 60.34 ? C5 NAG 600 B 1 HETATM 6 C C6 NAG . . . F 5 7.727 20.759 13.031 1 59.99 ? C6 NAG 600 B 1 HETATM 7 C C7 NAG . . . F 5 14.397 21.853 12.824 1 56.63 ? C7 NAG 600 B 1 HETATM 8 C C8 NAG . . . F 5 14.267 21.104 14.118 1 56.05 ? C8 NAG 600 B 1 HETATM 9 N N2 NAG . . . F 5 13.174 22.517 12.292 1 58.08 ? N2 NAG 600 B 1 HETATM 10 O O3 NAG . . . F 5 12.421 19.844 11.349 1 59.52 ? O3 NAG 600 B 1 HETATM 11 O O4 NAG . . . F 5 9.671 19.628 10.754 1 62.1 ? O4 NAG 600 B 1 HETATM 12 O O5 NAG . . . F 5 9.626 22.41 13.646 1 60.04 ? O5 NAG 600 B 1 HETATM 13 O O6 NAG . . . F 5 6.722 21.51 13.31 1 60.13 ? O6 NAG 600 B 1 HETATM 14 O O7 NAG . . . F 5 15.604 22.219 12.415 1 55.28 ? O7 NAG 600 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 14 #