data_1TQ9 # _model_server_result.job_id lpBAPBCmoC60zaq8K88aBA _model_server_result.datetime_utc '2025-03-03 00:19:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":126}' # _entry.id 1TQ9 # _exptl.entry_id 1TQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 540.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TQ9 _cell.length_a 41.471 _cell.length_b 69.689 _cell.length_c 110.804 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A C MET 30 A MET 30 1_555 A N YCM 31 A YCM 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C YCM 31 A YCM 31 1_555 A N YCM 32 A YCM 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C YCM 32 A YCM 32 1_555 A N ARG 33 A ARG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C MET 30 B MET 30 1_555 B N YCM 31 B YCM 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C YCM 31 B YCM 31 1_555 B N YCM 32 B YCM 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C YCM 32 B YCM 32 1_555 B N ARG 33 B ARG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C19 H25 N8 O9 P' _chem_comp.formula_weight 540.424 _chem_comp.id CPA _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CPA doub 70 n n P O2P CPA sing 71 n n P O3D CPA sing 72 n n P O5B CPA sing 73 n n O2P HOP2 CPA sing 74 n n O5D C5X CPA sing 75 n n O5D HO5C CPA sing 76 n n C5X C4X CPA sing 77 n n C5X H51C CPA sing 78 n n C5X H52C CPA sing 79 n n C4X O4D CPA sing 80 n n C4X C3X CPA sing 81 n n C4X H4D CPA sing 82 n n O4D C1X CPA sing 83 n n C3X O3D CPA sing 84 n n C3X C2X CPA sing 85 n n C3X H3D CPA sing 86 n n C2X C1X CPA sing 87 n n C2X H21C CPA sing 88 n n C2X H22C CPA sing 89 n n C1X N1C CPA sing 90 n n C1X H1D CPA sing 91 n n N1C CC2 CPA sing 92 n n N1C CC6 CPA sing 93 n n CC2 N3C CPA sing 94 n n CC2 O2C CPA doub 95 n n N3C CC4 CPA doub 96 n n CC4 CC5 CPA sing 97 n n CC4 N4C CPA sing 98 n n CC5 CC6 CPA doub 99 n n CC5 H5C CPA sing 100 n n CC6 H6C CPA sing 101 n n N4C H41C CPA sing 102 n n N4C H42C CPA sing 103 n n O5B C5B CPA sing 104 n n C5B C4B CPA sing 105 n n C5B H51A CPA sing 106 n n C5B H52A CPA sing 107 n n C4B O4B CPA sing 108 n n C4B C3B CPA sing 109 n n C4B H4B CPA sing 110 n n O4B C1B CPA sing 111 n n C3B O3B CPA sing 112 n n C3B C2B CPA sing 113 n n C3B H3B CPA sing 114 n n O3B HO3A CPA sing 115 n n C2B C1B CPA sing 116 n n C2B H21A CPA sing 117 n n C2B H22A CPA sing 118 n n C1B N9A CPA sing 119 n n C1B H1B CPA sing 120 n n N9A C8A CPA sing 121 n y N9A C4A CPA sing 122 n y C8A N7A CPA doub 123 n y C8A H8A CPA sing 124 n n N7A C5A CPA sing 125 n y C5A C6A CPA sing 126 n y C5A C4A CPA doub 127 n y C6A N6A CPA sing 128 n n C6A N1A CPA doub 129 n y N6A H61A CPA sing 130 n n N6A H62A CPA sing 131 n n N1A C2A CPA sing 132 n y C2A N3A CPA doub 133 n y C2A H2A CPA sing 134 n n N3A C4A CPA sing 135 n y # _atom_sites.entry_id 1TQ9 _atom_sites.fract_transf_matrix[1][1] 0.02411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CPA A 1 126 126 CPA CPA . D 2 CPA B 1 626 626 CPA CPA . E 3 HOH A 1 132 132 HOH WAT . E 3 HOH A 2 134 134 HOH WAT . E 3 HOH A 3 135 135 HOH WAT . E 3 HOH A 4 136 136 HOH WAT . E 3 HOH A 5 137 137 HOH WAT . E 3 HOH A 6 138 138 HOH WAT . E 3 HOH A 7 139 139 HOH WAT . E 3 HOH A 8 140 140 HOH WAT . E 3 HOH A 9 141 141 HOH WAT . E 3 HOH A 10 142 142 HOH WAT . E 3 HOH A 11 143 143 HOH WAT . E 3 HOH A 12 146 146 HOH WAT . E 3 HOH A 13 148 148 HOH WAT . E 3 HOH A 14 150 150 HOH WAT . E 3 HOH A 15 152 152 HOH WAT . E 3 HOH A 16 153 153 HOH WAT . E 3 HOH A 17 155 155 HOH WAT . E 3 HOH A 18 160 160 HOH WAT . E 3 HOH A 19 161 161 HOH WAT . E 3 HOH A 20 162 162 HOH WAT . E 3 HOH A 21 167 167 HOH WAT . E 3 HOH A 22 170 170 HOH WAT . E 3 HOH A 23 171 171 HOH WAT . E 3 HOH A 24 172 172 HOH WAT . E 3 HOH A 25 173 173 HOH WAT . E 3 HOH A 26 174 174 HOH WAT . E 3 HOH A 27 175 175 HOH WAT . E 3 HOH A 28 177 177 HOH WAT . E 3 HOH A 29 178 178 HOH WAT . E 3 HOH A 30 179 179 HOH WAT . E 3 HOH A 31 181 181 HOH WAT . E 3 HOH A 32 185 185 HOH WAT . E 3 HOH A 33 186 186 HOH WAT . E 3 HOH A 34 188 188 HOH WAT . E 3 HOH A 35 189 189 HOH WAT . E 3 HOH A 36 190 190 HOH WAT . E 3 HOH A 37 194 194 HOH WAT . E 3 HOH A 38 195 195 HOH WAT . E 3 HOH A 39 197 197 HOH WAT . E 3 HOH A 40 198 198 HOH WAT . E 3 HOH A 41 199 199 HOH WAT . E 3 HOH A 42 201 201 HOH WAT . E 3 HOH A 43 202 202 HOH WAT . E 3 HOH A 44 203 203 HOH WAT . E 3 HOH A 45 206 206 HOH WAT . E 3 HOH A 46 208 208 HOH WAT . E 3 HOH A 47 210 210 HOH WAT . E 3 HOH A 48 212 212 HOH WAT . E 3 HOH A 49 219 219 HOH WAT . E 3 HOH A 50 220 220 HOH WAT . E 3 HOH A 51 222 222 HOH WAT . E 3 HOH A 52 225 225 HOH WAT . E 3 HOH A 53 227 227 HOH WAT . E 3 HOH A 54 229 229 HOH WAT . E 3 HOH A 55 230 230 HOH WAT . E 3 HOH A 56 231 231 HOH WAT . E 3 HOH A 57 234 234 HOH WAT . E 3 HOH A 58 235 235 HOH WAT . E 3 HOH A 59 239 239 HOH WAT . E 3 HOH A 60 241 241 HOH WAT . E 3 HOH A 61 244 244 HOH WAT . E 3 HOH A 62 248 248 HOH WAT . E 3 HOH A 63 252 252 HOH WAT . F 3 HOH B 1 131 131 HOH WAT . F 3 HOH B 2 133 133 HOH WAT . F 3 HOH B 3 144 144 HOH WAT . F 3 HOH B 4 145 145 HOH WAT . F 3 HOH B 5 147 147 HOH WAT . F 3 HOH B 6 149 149 HOH WAT . F 3 HOH B 7 151 151 HOH WAT . F 3 HOH B 8 154 154 HOH WAT . F 3 HOH B 9 156 156 HOH WAT . F 3 HOH B 10 157 157 HOH WAT . F 3 HOH B 11 158 158 HOH WAT . F 3 HOH B 12 159 159 HOH WAT . F 3 HOH B 13 163 163 HOH WAT . F 3 HOH B 14 164 164 HOH WAT . F 3 HOH B 15 165 165 HOH WAT . F 3 HOH B 16 166 166 HOH WAT . F 3 HOH B 17 168 168 HOH WAT . F 3 HOH B 18 169 169 HOH WAT . F 3 HOH B 19 176 176 HOH WAT . F 3 HOH B 20 180 180 HOH WAT . F 3 HOH B 21 182 182 HOH WAT . F 3 HOH B 22 183 183 HOH WAT . F 3 HOH B 23 184 184 HOH WAT . F 3 HOH B 24 187 187 HOH WAT . F 3 HOH B 25 191 191 HOH WAT . F 3 HOH B 26 192 192 HOH WAT . F 3 HOH B 27 193 193 HOH WAT . F 3 HOH B 28 196 196 HOH WAT . F 3 HOH B 29 200 200 HOH WAT . F 3 HOH B 30 204 204 HOH WAT . F 3 HOH B 31 205 205 HOH WAT . F 3 HOH B 32 207 207 HOH WAT . F 3 HOH B 33 209 209 HOH WAT . F 3 HOH B 34 211 211 HOH WAT . F 3 HOH B 35 213 213 HOH WAT . F 3 HOH B 36 214 214 HOH WAT . F 3 HOH B 37 216 216 HOH WAT . F 3 HOH B 38 217 217 HOH WAT . F 3 HOH B 39 218 218 HOH WAT . F 3 HOH B 40 221 221 HOH WAT . F 3 HOH B 41 223 223 HOH WAT . F 3 HOH B 42 224 224 HOH WAT . F 3 HOH B 43 228 228 HOH WAT . F 3 HOH B 44 232 232 HOH WAT . F 3 HOH B 45 233 233 HOH WAT . F 3 HOH B 46 236 236 HOH WAT . F 3 HOH B 47 237 237 HOH WAT . F 3 HOH B 48 238 238 HOH WAT . F 3 HOH B 49 240 240 HOH WAT . F 3 HOH B 50 242 242 HOH WAT . F 3 HOH B 51 243 243 HOH WAT . F 3 HOH B 52 245 245 HOH WAT . F 3 HOH B 53 246 246 HOH WAT . F 3 HOH B 54 247 247 HOH WAT . F 3 HOH B 55 251 251 HOH WAT . F 3 HOH B 56 253 253 HOH WAT . F 3 HOH B 57 254 254 HOH WAT . F 3 HOH B 58 255 255 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CPA . . . C 2 11.793 7.367 18.18 1 25.91 ? P CPA 126 A 1 HETATM 2 O O1P CPA . . . C 2 12.978 7.093 17.346 1 29.51 ? O1P CPA 126 A 1 HETATM 3 O O2P CPA . . . C 2 10.892 8.49 17.848 1 27.85 ? O2P CPA 126 A 1 HETATM 4 O O5D CPA . . . C 2 9.456 4.599 21.741 1 38.84 ? O5D CPA 126 A 1 HETATM 5 C C5X CPA . . . C 2 10.092 3.883 20.661 1 33.23 ? C5X CPA 126 A 1 HETATM 6 C C4X CPA . . . C 2 9.621 4.44 19.345 1 32.5 ? C4X CPA 126 A 1 HETATM 7 O O4D CPA . . . C 2 8.193 4.278 19.29 1 32.07 ? O4D CPA 126 A 1 HETATM 8 C C3X CPA . . . C 2 9.854 5.936 19.153 1 29.97 ? C3X CPA 126 A 1 HETATM 9 O O3D CPA . . . C 2 10.894 6.06 18.209 1 28.41 ? O3D CPA 126 A 1 HETATM 10 C C2X CPA . . . C 2 8.651 6.417 18.335 1 30.7 ? C2X CPA 126 A 1 HETATM 11 C C1X CPA . . . C 2 7.689 5.235 18.397 1 30.6 ? C1X CPA 126 A 1 HETATM 12 N N1C CPA . . . C 2 6.277 5.51 18.681 1 27.04 ? N1C CPA 126 A 1 HETATM 13 C CC2 CPA . . . C 2 5.551 6.242 17.746 1 23.06 ? CC2 CPA 126 A 1 HETATM 14 N N3C CPA . . . C 2 4.23 6.412 17.929 1 23.22 ? N3C CPA 126 A 1 HETATM 15 C CC4 CPA . . . C 2 3.635 5.905 19.011 1 24.64 ? CC4 CPA 126 A 1 HETATM 16 C CC5 CPA . . . C 2 4.367 5.198 20.005 1 25.09 ? CC5 CPA 126 A 1 HETATM 17 C CC6 CPA . . . C 2 5.674 5.03 19.807 1 25.54 ? CC6 CPA 126 A 1 HETATM 18 O O2C CPA . . . C 2 6.147 6.72 16.768 1 21.09 ? O2C CPA 126 A 1 HETATM 19 N N4C CPA . . . C 2 2.315 6.071 19.143 1 23.02 ? N4C CPA 126 A 1 HETATM 20 O O5B CPA . . . C 2 12.284 7.585 19.668 1 28.78 ? O5B CPA 126 A 1 HETATM 21 C C5B CPA . . . C 2 13.415 6.844 20.16 1 29.79 ? C5B CPA 126 A 1 HETATM 22 C C4B CPA . . . C 2 14.628 7.74 20.214 1 26.66 ? C4B CPA 126 A 1 HETATM 23 O O4B CPA . . . C 2 14.216 8.926 20.895 1 25.58 ? O4B CPA 126 A 1 HETATM 24 C C3B CPA . . . C 2 15.783 7.154 21.016 1 25.89 ? C3B CPA 126 A 1 HETATM 25 O O3B CPA . . . C 2 16.768 6.799 20.077 1 24.57 ? O3B CPA 126 A 1 HETATM 26 C C2B CPA . . . C 2 16.342 8.319 21.822 1 26.1 ? C2B CPA 126 A 1 HETATM 27 C C1B CPA . . . C 2 15.194 9.323 21.81 1 23.73 ? C1B CPA 126 A 1 HETATM 28 N N9A CPA . . . C 2 14.503 9.71 23.03 1 20.96 ? N9A CPA 126 A 1 HETATM 29 C C8A CPA . . . C 2 13.58 9.031 23.777 1 18.52 ? C8A CPA 126 A 1 HETATM 30 N N7A CPA . . . C 2 13.002 9.779 24.688 1 19.67 ? N7A CPA 126 A 1 HETATM 31 C C5A CPA . . . C 2 13.617 11.012 24.553 1 15.61 ? C5A CPA 126 A 1 HETATM 32 C C6A CPA . . . C 2 13.426 12.251 25.192 1 16.01 ? C6A CPA 126 A 1 HETATM 33 N N6A CPA . . . C 2 12.459 12.487 26.077 1 13.87 ? N6A CPA 126 A 1 HETATM 34 N N1A CPA . . . C 2 14.249 13.267 24.855 1 15.45 ? N1A CPA 126 A 1 HETATM 35 C C2A CPA . . . C 2 15.167 13.059 23.901 1 15.81 ? C2A CPA 126 A 1 HETATM 36 N N3A CPA . . . C 2 15.404 11.958 23.192 1 18.07 ? N3A CPA 126 A 1 HETATM 37 C C4A CPA . . . C 2 14.588 10.964 23.575 1 17.61 ? C4A CPA 126 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #