data_1TR7 # _model_server_result.job_id ggiUy953XmbkoKxN6t34Xw _model_server_result.datetime_utc '2024-11-24 20:28:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2692}' # _entry.id 1TR7 # _exptl.entry_id 1TR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.2 _cell.angle_gamma 90 _cell.entry_id 1TR7 _cell.length_a 134.1 _cell.length_b 29.2 _cell.length_c 93.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 264 n n C1 H11 MPD sing 265 n n C1 H12 MPD sing 266 n n C1 H13 MPD sing 267 n n C2 O2 MPD sing 268 n n C2 CM MPD sing 269 n n C2 C3 MPD sing 270 n n O2 HO2 MPD sing 271 n n CM HM1 MPD sing 272 n n CM HM2 MPD sing 273 n n CM HM3 MPD sing 274 n n C3 C4 MPD sing 275 n n C3 H31 MPD sing 276 n n C3 H32 MPD sing 277 n n C4 O4 MPD sing 278 n n C4 C5 MPD sing 279 n n C4 H4 MPD sing 280 n n O4 HO4 MPD sing 281 n n C5 H51 MPD sing 282 n n C5 H52 MPD sing 283 n n C5 H53 MPD sing 284 n n # _atom_sites.entry_id 1TR7 _atom_sites.fract_transf_matrix[1][1] 0.007454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000291 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DEG B 1 502 2 DEG DEG . D 3 CAC A 1 1200 1200 CAC CAC . E 2 DEG A 1 501 1 DEG DEG . F 4 MPD A 1 2692 2692 MPD MPD . G 5 HOH B 1 503 5 HOH WAT . G 5 HOH B 2 504 7 HOH WAT . G 5 HOH B 3 505 8 HOH WAT . G 5 HOH B 4 506 9 HOH WAT . G 5 HOH B 5 507 11 HOH WAT . G 5 HOH B 6 508 12 HOH WAT . G 5 HOH B 7 509 13 HOH WAT . G 5 HOH B 8 510 15 HOH WAT . G 5 HOH B 9 511 23 HOH WAT . G 5 HOH B 10 512 25 HOH WAT . G 5 HOH B 11 513 30 HOH WAT . G 5 HOH B 12 514 33 HOH WAT . G 5 HOH B 13 515 34 HOH WAT . G 5 HOH B 14 516 37 HOH WAT . G 5 HOH B 15 517 38 HOH WAT . G 5 HOH B 16 518 39 HOH WAT . G 5 HOH B 17 519 45 HOH WAT . G 5 HOH B 18 520 47 HOH WAT . G 5 HOH B 19 521 51 HOH WAT . G 5 HOH B 20 522 52 HOH WAT . G 5 HOH B 21 523 53 HOH WAT . G 5 HOH B 22 524 59 HOH WAT . G 5 HOH B 23 525 61 HOH WAT . G 5 HOH B 24 526 63 HOH WAT . G 5 HOH B 25 527 65 HOH WAT . G 5 HOH B 26 528 67 HOH WAT . G 5 HOH B 27 529 69 HOH WAT . G 5 HOH B 28 530 71 HOH WAT . G 5 HOH B 29 531 72 HOH WAT . G 5 HOH B 30 532 73 HOH WAT . G 5 HOH B 31 533 76 HOH WAT . G 5 HOH B 32 534 79 HOH WAT . G 5 HOH B 33 535 83 HOH WAT . G 5 HOH B 34 536 89 HOH WAT . G 5 HOH B 35 537 91 HOH WAT . G 5 HOH B 36 538 93 HOH WAT . G 5 HOH B 37 539 94 HOH WAT . G 5 HOH B 38 540 96 HOH WAT . G 5 HOH B 39 541 97 HOH WAT . G 5 HOH B 40 542 98 HOH WAT . G 5 HOH B 41 543 102 HOH WAT . G 5 HOH B 42 544 103 HOH WAT . G 5 HOH B 43 545 105 HOH WAT . G 5 HOH B 44 546 107 HOH WAT . G 5 HOH B 45 547 108 HOH WAT . G 5 HOH B 46 548 109 HOH WAT . G 5 HOH B 47 549 111 HOH WAT . G 5 HOH B 48 550 113 HOH WAT . G 5 HOH B 49 551 114 HOH WAT . G 5 HOH B 50 552 116 HOH WAT . G 5 HOH B 51 553 117 HOH WAT . G 5 HOH B 52 554 119 HOH WAT . G 5 HOH B 53 555 123 HOH WAT . G 5 HOH B 54 556 124 HOH WAT . G 5 HOH B 55 557 125 HOH WAT . G 5 HOH B 56 558 127 HOH WAT . G 5 HOH B 57 559 128 HOH WAT . G 5 HOH B 58 560 131 HOH WAT . G 5 HOH B 59 561 134 HOH WAT . G 5 HOH B 60 562 136 HOH WAT . G 5 HOH B 61 563 139 HOH WAT . G 5 HOH B 62 564 140 HOH WAT . G 5 HOH B 63 565 141 HOH WAT . G 5 HOH B 64 566 144 HOH WAT . G 5 HOH B 65 567 145 HOH WAT . G 5 HOH B 66 568 147 HOH WAT . G 5 HOH B 67 569 148 HOH WAT . G 5 HOH B 68 570 149 HOH WAT . G 5 HOH B 69 571 150 HOH WAT . H 5 HOH A 1 2693 1 HOH WAT . H 5 HOH A 2 2694 2 HOH WAT . H 5 HOH A 3 2695 3 HOH WAT . H 5 HOH A 4 2696 4 HOH WAT . H 5 HOH A 5 2697 6 HOH WAT . H 5 HOH A 6 2698 10 HOH WAT . H 5 HOH A 7 2699 14 HOH WAT . H 5 HOH A 8 2700 16 HOH WAT . H 5 HOH A 9 2701 17 HOH WAT . H 5 HOH A 10 2702 18 HOH WAT . H 5 HOH A 11 2703 19 HOH WAT . H 5 HOH A 12 2704 20 HOH WAT . H 5 HOH A 13 2705 21 HOH WAT . H 5 HOH A 14 2706 22 HOH WAT . H 5 HOH A 15 2707 24 HOH WAT . H 5 HOH A 16 2708 26 HOH WAT . H 5 HOH A 17 2709 27 HOH WAT . H 5 HOH A 18 2710 28 HOH WAT . H 5 HOH A 19 2711 29 HOH WAT . H 5 HOH A 20 2712 31 HOH WAT . H 5 HOH A 21 2713 32 HOH WAT . H 5 HOH A 22 2714 35 HOH WAT . H 5 HOH A 23 2715 36 HOH WAT . H 5 HOH A 24 2716 40 HOH WAT . H 5 HOH A 25 2717 41 HOH WAT . H 5 HOH A 26 2718 42 HOH WAT . H 5 HOH A 27 2719 43 HOH WAT . H 5 HOH A 28 2720 44 HOH WAT . H 5 HOH A 29 2721 46 HOH WAT . H 5 HOH A 30 2722 48 HOH WAT . H 5 HOH A 31 2723 49 HOH WAT . H 5 HOH A 32 2724 50 HOH WAT . H 5 HOH A 33 2725 54 HOH WAT . H 5 HOH A 34 2726 55 HOH WAT . H 5 HOH A 35 2727 56 HOH WAT . H 5 HOH A 36 2728 57 HOH WAT . H 5 HOH A 37 2729 58 HOH WAT . H 5 HOH A 38 2730 60 HOH WAT . H 5 HOH A 39 2731 62 HOH WAT . H 5 HOH A 40 2732 64 HOH WAT . H 5 HOH A 41 2733 68 HOH WAT . H 5 HOH A 42 2734 70 HOH WAT . H 5 HOH A 43 2735 74 HOH WAT . H 5 HOH A 44 2736 75 HOH WAT . H 5 HOH A 45 2737 77 HOH WAT . H 5 HOH A 46 2738 78 HOH WAT . H 5 HOH A 47 2739 80 HOH WAT . H 5 HOH A 48 2740 81 HOH WAT . H 5 HOH A 49 2741 82 HOH WAT . H 5 HOH A 50 2742 84 HOH WAT . H 5 HOH A 51 2743 86 HOH WAT . H 5 HOH A 52 2744 87 HOH WAT . H 5 HOH A 53 2745 88 HOH WAT . H 5 HOH A 54 2746 90 HOH WAT . H 5 HOH A 55 2747 92 HOH WAT . H 5 HOH A 56 2748 95 HOH WAT . H 5 HOH A 57 2749 99 HOH WAT . H 5 HOH A 58 2750 100 HOH WAT . H 5 HOH A 59 2751 101 HOH WAT . H 5 HOH A 60 2752 110 HOH WAT . H 5 HOH A 61 2753 112 HOH WAT . H 5 HOH A 62 2754 118 HOH WAT . H 5 HOH A 63 2755 120 HOH WAT . H 5 HOH A 64 2756 121 HOH WAT . H 5 HOH A 65 2757 122 HOH WAT . H 5 HOH A 66 2758 126 HOH WAT . H 5 HOH A 67 2759 129 HOH WAT . H 5 HOH A 68 2760 130 HOH WAT . H 5 HOH A 69 2761 132 HOH WAT . H 5 HOH A 70 2762 133 HOH WAT . H 5 HOH A 71 2763 135 HOH WAT . H 5 HOH A 72 2764 137 HOH WAT . H 5 HOH A 73 2765 138 HOH WAT . H 5 HOH A 74 2766 142 HOH WAT . H 5 HOH A 75 2767 143 HOH WAT . H 5 HOH A 76 2768 146 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 4 39.286 -10.949 46.05 0.75 37.86 ? C1 MPD 2692 A 1 HETATM 2 C C2 MPD . . . F 4 39.344 -9.699 45.193 0.75 35.26 ? C2 MPD 2692 A 1 HETATM 3 O O2 MPD . . . F 4 39.854 -8.656 46.021 0.75 32.69 ? O2 MPD 2692 A 1 HETATM 4 C CM MPD . . . F 4 40.359 -9.907 44.094 0.75 34.8 ? CM MPD 2692 A 1 HETATM 5 C C3 MPD . . . F 4 37.965 -9.331 44.662 0.75 36.06 ? C3 MPD 2692 A 1 HETATM 6 C C4 MPD . . . F 4 36.846 -9.472 45.714 0.75 36.4 ? C4 MPD 2692 A 1 HETATM 7 O O4 MPD . . . F 4 37.165 -8.721 46.873 0.75 36.6 ? O4 MPD 2692 A 1 HETATM 8 C C5 MPD . . . F 4 35.508 -9.011 45.144 0.75 35.1 ? C5 MPD 2692 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 1111 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #