data_1TRG # _model_server_result.job_id dsQ32fHD8102xEa6nrKN6w _model_server_result.datetime_utc '2024-11-05 19:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1trg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":566}' # _entry.id 1TRG # _exptl.entry_id 1TRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TRG _cell.length_a 71.96 _cell.length_b 71.96 _cell.length_c 115.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 76.733333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A O2 FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale3 A SG CYS 147 A CYS 146 1_555 B C6 UMP . A UMP 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TRG _atom_sites.fract_transf_matrix[1][1] 0.013897 _atom_sites.fract_transf_matrix[1][2] 0.008023 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UMP A 1 565 565 UMP UMP . C 3 CB3 A 1 566 566 CB3 CB3 . D 4 HOH A 1 700 700 HOH HOH . D 4 HOH A 2 701 701 HOH HOH . D 4 HOH A 3 702 702 HOH HOH . D 4 HOH A 4 703 703 HOH HOH . D 4 HOH A 5 704 704 HOH HOH . D 4 HOH A 6 705 705 HOH HOH . D 4 HOH A 7 706 706 HOH HOH . D 4 HOH A 8 707 707 HOH HOH . D 4 HOH A 9 708 708 HOH HOH . D 4 HOH A 10 709 709 HOH HOH . D 4 HOH A 11 710 710 HOH HOH . D 4 HOH A 12 711 711 HOH HOH . D 4 HOH A 13 712 712 HOH HOH . D 4 HOH A 14 713 713 HOH HOH . D 4 HOH A 15 714 714 HOH HOH . D 4 HOH A 16 715 715 HOH HOH . D 4 HOH A 17 716 716 HOH HOH . D 4 HOH A 18 717 717 HOH HOH . D 4 HOH A 19 718 718 HOH HOH . D 4 HOH A 20 719 719 HOH HOH . D 4 HOH A 21 720 720 HOH HOH . D 4 HOH A 22 721 721 HOH HOH . D 4 HOH A 23 722 722 HOH HOH . D 4 HOH A 24 723 723 HOH HOH . D 4 HOH A 25 724 724 HOH HOH . D 4 HOH A 26 725 725 HOH HOH . D 4 HOH A 27 726 726 HOH HOH . D 4 HOH A 28 727 727 HOH HOH . D 4 HOH A 29 728 728 HOH HOH . D 4 HOH A 30 729 729 HOH HOH . D 4 HOH A 31 730 730 HOH HOH . D 4 HOH A 32 731 731 HOH HOH . D 4 HOH A 33 732 732 HOH HOH . D 4 HOH A 34 733 733 HOH HOH . D 4 HOH A 35 734 734 HOH HOH . D 4 HOH A 36 735 735 HOH HOH . D 4 HOH A 37 736 736 HOH HOH . D 4 HOH A 38 737 737 HOH HOH . D 4 HOH A 39 738 738 HOH HOH . D 4 HOH A 40 739 739 HOH HOH . D 4 HOH A 41 740 740 HOH HOH . D 4 HOH A 42 741 741 HOH HOH . D 4 HOH A 43 742 742 HOH HOH . D 4 HOH A 44 743 743 HOH HOH . D 4 HOH A 45 744 744 HOH HOH . D 4 HOH A 46 745 745 HOH HOH . D 4 HOH A 47 746 746 HOH HOH . D 4 HOH A 48 747 747 HOH HOH . D 4 HOH A 49 748 748 HOH HOH . D 4 HOH A 50 749 749 HOH HOH . D 4 HOH A 51 750 750 HOH HOH . D 4 HOH A 52 751 751 HOH HOH . D 4 HOH A 53 752 752 HOH HOH . D 4 HOH A 54 753 753 HOH HOH . D 4 HOH A 55 754 754 HOH HOH . D 4 HOH A 56 755 755 HOH HOH . D 4 HOH A 57 756 756 HOH HOH . D 4 HOH A 58 757 757 HOH HOH . D 4 HOH A 59 758 758 HOH HOH . D 4 HOH A 60 759 759 HOH HOH . D 4 HOH A 61 760 760 HOH HOH . D 4 HOH A 62 761 761 HOH HOH . D 4 HOH A 63 762 762 HOH HOH . D 4 HOH A 64 763 763 HOH HOH . D 4 HOH A 65 764 764 HOH HOH . D 4 HOH A 66 765 765 HOH HOH . D 4 HOH A 67 766 766 HOH HOH . D 4 HOH A 68 767 767 HOH HOH . D 4 HOH A 69 768 768 HOH HOH . D 4 HOH A 70 769 769 HOH HOH . D 4 HOH A 71 770 770 HOH HOH . D 4 HOH A 72 771 771 HOH HOH . D 4 HOH A 73 773 773 HOH HOH . D 4 HOH A 74 774 774 HOH HOH . D 4 HOH A 75 775 775 HOH HOH . D 4 HOH A 76 776 776 HOH HOH . D 4 HOH A 77 777 777 HOH HOH . D 4 HOH A 78 778 778 HOH HOH . D 4 HOH A 79 779 779 HOH HOH . D 4 HOH A 80 780 780 HOH HOH . D 4 HOH A 81 781 781 HOH HOH . D 4 HOH A 82 782 782 HOH HOH . D 4 HOH A 83 783 783 HOH HOH . D 4 HOH A 84 785 785 HOH HOH . D 4 HOH A 85 786 786 HOH HOH . D 4 HOH A 86 787 787 HOH HOH . D 4 HOH A 87 788 788 HOH HOH . D 4 HOH A 88 789 789 HOH HOH . D 4 HOH A 89 790 790 HOH HOH . D 4 HOH A 90 791 791 HOH HOH . D 4 HOH A 91 793 793 HOH HOH . D 4 HOH A 92 794 794 HOH HOH . D 4 HOH A 93 795 795 HOH HOH . D 4 HOH A 94 798 798 HOH HOH . D 4 HOH A 95 801 801 HOH HOH . D 4 HOH A 96 802 802 HOH HOH . D 4 HOH A 97 803 803 HOH HOH . D 4 HOH A 98 805 805 HOH HOH . D 4 HOH A 99 806 806 HOH HOH . D 4 HOH A 100 807 807 HOH HOH . D 4 HOH A 101 808 808 HOH HOH . D 4 HOH A 102 809 809 HOH HOH . D 4 HOH A 103 810 810 HOH HOH . D 4 HOH A 104 811 811 HOH HOH . D 4 HOH A 105 812 812 HOH HOH . D 4 HOH A 106 813 813 HOH HOH . D 4 HOH A 107 814 814 HOH HOH . D 4 HOH A 108 815 815 HOH HOH . D 4 HOH A 109 816 816 HOH HOH . D 4 HOH A 110 818 818 HOH HOH . D 4 HOH A 111 819 819 HOH HOH . D 4 HOH A 112 820 820 HOH HOH . D 4 HOH A 113 822 822 HOH HOH . D 4 HOH A 114 823 823 HOH HOH . D 4 HOH A 115 824 824 HOH HOH . D 4 HOH A 116 825 825 HOH HOH . D 4 HOH A 117 827 827 HOH HOH . D 4 HOH A 118 828 828 HOH HOH . D 4 HOH A 119 829 829 HOH HOH . D 4 HOH A 120 832 832 HOH HOH . D 4 HOH A 121 833 833 HOH HOH . D 4 HOH A 122 834 834 HOH HOH . D 4 HOH A 123 836 836 HOH HOH . D 4 HOH A 124 837 837 HOH HOH . D 4 HOH A 125 838 838 HOH HOH . D 4 HOH A 126 839 839 HOH HOH . D 4 HOH A 127 840 840 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . C 3 29.832 -19.392 35.162 1 17.99 ? N1 CB3 566 A 1 HETATM 2 C C2 CB3 . . . C 3 28.517 -19.516 34.825 1 19.28 ? C2 CB3 566 A 1 HETATM 3 N NA2 CB3 . . . C 3 28.124 -19.916 33.614 1 15.3 ? NA2 CB3 566 A 1 HETATM 4 N N3 CB3 . . . C 3 27.578 -19.252 35.734 1 18.49 ? N3 CB3 566 A 1 HETATM 5 C C4 CB3 . . . C 3 27.907 -18.939 37.018 1 20.61 ? C4 CB3 566 A 1 HETATM 6 O O4 CB3 . . . C 3 26.908 -18.567 37.888 1 19.74 ? O4 CB3 566 A 1 HETATM 7 C C4A CB3 . . . C 3 29.245 -18.965 37.436 1 19.38 ? C4A CB3 566 A 1 HETATM 8 C C5 CB3 . . . C 3 29.64 -18.832 38.781 1 21.28 ? C5 CB3 566 A 1 HETATM 9 C C6 CB3 . . . C 3 31.005 -18.9 39.161 1 19.55 ? C6 CB3 566 A 1 HETATM 10 C C7 CB3 . . . C 3 31.973 -19.058 38.166 1 20.32 ? C7 CB3 566 A 1 HETATM 11 C C8 CB3 . . . C 3 31.568 -19.196 36.834 1 21.06 ? C8 CB3 566 A 1 HETATM 12 C C8A CB3 . . . C 3 30.216 -19.17 36.447 1 21.33 ? C8A CB3 566 A 1 HETATM 13 C C9 CB3 . . . C 3 31.425 -19.137 40.568 1 17.56 ? C9 CB3 566 A 1 HETATM 14 N N10 CB3 . . . C 3 30.327 -19.411 41.515 1 15.41 ? N10 CB3 566 A 1 HETATM 15 C C11 CB3 . . . C 3 27.963 -22.826 41.339 1 23.51 ? C11 CB3 566 A 1 HETATM 16 C C12 CB3 . . . C 3 29.167 -22.781 40.638 1 20.34 ? C12 CB3 566 A 1 HETATM 17 C C13 CB3 . . . C 3 29.951 -21.635 40.712 1 20.81 ? C13 CB3 566 A 1 HETATM 18 C C14 CB3 . . . C 3 29.546 -20.511 41.474 1 19.14 ? C14 CB3 566 A 1 HETATM 19 C C15 CB3 . . . C 3 28.318 -20.56 42.156 1 20.36 ? C15 CB3 566 A 1 HETATM 20 C C16 CB3 . . . C 3 27.531 -21.712 42.086 1 20.42 ? C16 CB3 566 A 1 HETATM 21 C C CB3 . . . C 3 27.232 -24.07 41.364 1 28.4 ? C CB3 566 A 1 HETATM 22 O O CB3 . . . C 3 27.4 -24.969 40.533 1 32.03 ? O CB3 566 A 1 HETATM 23 N N CB3 . . . C 3 26.355 -24.205 42.358 1 30.25 ? N CB3 566 A 1 HETATM 24 C CA CB3 . . . C 3 25.529 -25.391 42.596 1 33.69 ? CA CB3 566 A 1 HETATM 25 C CB CB3 . . . C 3 25.995 -26.024 43.909 1 39.03 ? CB CB3 566 A 1 HETATM 26 C CG CB3 . . . C 3 27.002 -27.138 43.73 1 45.41 ? CG CB3 566 A 1 HETATM 27 C CD CB3 . . . C 3 27.894 -27.336 44.94 1 48.76 ? CD CB3 566 A 1 HETATM 28 O OE1 CB3 . . . C 3 27.382 -27.502 46.069 1 53.07 ? OE1 CB3 566 A 1 HETATM 29 O OE2 CB3 . . . C 3 29.127 -27.337 44.755 1 53.33 ? OE2 CB3 566 A 1 HETATM 30 C CT CB3 . . . C 3 24.066 -24.97 42.7 1 31.08 ? CT CB3 566 A 1 HETATM 31 O O1 CB3 . . . C 3 23.811 -23.807 43.075 1 27.95 ? O1 CB3 566 A 1 HETATM 32 O O2 CB3 . . . C 3 23.194 -25.81 42.406 1 28.7 ? O2 CB3 566 A 1 HETATM 33 C CP1 CB3 . . . C 3 30.09 -18.375 42.514 1 17 ? CP1 CB3 566 A 1 HETATM 34 C CP2 CB3 . . . C 3 28.917 -17.61 42.161 1 14.71 ? CP2 CB3 566 A 1 HETATM 35 C CP3 CB3 . . . C 3 27.989 -16.9 41.91 1 12.33 ? CP3 CB3 566 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #