data_1TRP # _model_server_result.job_id nlynemVuepYX4D7Mp8TZvg _model_server_result.datetime_utc '2024-10-14 18:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1trp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":105}' # _entry.id 1TRP # _exptl.entry_id 1TRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.35 _cell.angle_gamma 90 _cell.entry_id 1TRP _cell.length_a 49.15 _cell.length_b 48.15 _cell.length_c 40.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 B SG CYS 2 B CYS 202 1_555 B SG CYS 10 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf4 B SG CYS 6 B CYS 206 1_555 B SG CYS 103 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 C CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 A OD1 ASP 15 A ASP 15 1_555 C CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc3 C CA CA . A CA 106 1_555 G O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 C CA CA . A CA 106 1_555 G O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc5 C CA CA . A CA 106 1_555 G O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 C CA CA . A CA 106 1_555 G O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc7 B OD1 ASP 15 B ASP 215 1_555 E CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc8 B OD2 ASP 15 B ASP 215 1_555 E CA CA . B CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc9 E CA CA . B CA 306 1_555 H O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc10 E CA CA . B CA 306 1_555 H O HOH . B HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc11 E CA CA . B CA 306 1_555 H O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc12 E CA CA . B CA 306 1_555 H O HOH . B HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 2GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2GP doub 1 n n P O2P 2GP sing 2 n n P O3P 2GP sing 3 n n P O2' 2GP sing 4 n n O2P HOP2 2GP sing 5 n n O3P HOP3 2GP sing 6 n n O5' C5' 2GP sing 7 n n O5' HO5' 2GP sing 8 n n C5' C4' 2GP sing 9 n n C5' "H5'1" 2GP sing 10 n n C5' "H5'2" 2GP sing 11 n n C4' O4' 2GP sing 12 n n C4' C3' 2GP sing 13 n n C4' H4' 2GP sing 14 n n O4' C1' 2GP sing 15 n n C3' O3' 2GP sing 16 n n C3' C2' 2GP sing 17 n n C3' H3' 2GP sing 18 n n O3' HO3' 2GP sing 19 n n C2' O2' 2GP sing 20 n n C2' C1' 2GP sing 21 n n C2' H2' 2GP sing 22 n n C1' N9 2GP sing 23 n n C1' H1' 2GP sing 24 n n N9 C8 2GP sing 25 n y N9 C4 2GP sing 26 n y C8 N7 2GP doub 27 n y C8 H8 2GP sing 28 n n N7 C5 2GP sing 29 n y C5 C6 2GP sing 30 n n C5 C4 2GP doub 31 n y C6 O6 2GP doub 32 n n C6 N1 2GP sing 33 n n N1 C2 2GP sing 34 n n N1 HN1 2GP sing 35 n n C2 N2 2GP sing 36 n n C2 N3 2GP doub 37 n n N2 HN21 2GP sing 38 n n N2 HN22 2GP sing 39 n n N3 C4 2GP sing 40 n n # _atom_sites.entry_id 1TRP _atom_sites.fract_transf_matrix[1][1] 0.020346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 106 106 CA CA . D 3 2GP A 1 105 105 2GP 2GP . E 2 CA B 1 306 306 CA CA . F 3 2GP B 1 305 305 2GP 2GP . G 4 HOH A 1 401 401 HOH HOH . G 4 HOH A 2 402 402 HOH HOH . G 4 HOH A 3 404 404 HOH HOH . G 4 HOH A 4 405 405 HOH HOH . G 4 HOH A 5 406 406 HOH HOH . G 4 HOH A 6 407 407 HOH HOH . G 4 HOH A 7 408 408 HOH HOH . G 4 HOH A 8 412 412 HOH HOH . G 4 HOH A 9 416 416 HOH HOH . G 4 HOH A 10 417 417 HOH HOH . G 4 HOH A 11 418 418 HOH HOH . G 4 HOH A 12 419 419 HOH HOH . G 4 HOH A 13 422 422 HOH HOH . G 4 HOH A 14 423 423 HOH HOH . G 4 HOH A 15 424 424 HOH HOH . G 4 HOH A 16 425 425 HOH HOH . G 4 HOH A 17 428 428 HOH HOH . G 4 HOH A 18 430 430 HOH HOH . G 4 HOH A 19 431 431 HOH HOH . G 4 HOH A 20 432 432 HOH HOH . G 4 HOH A 21 436 436 HOH HOH . G 4 HOH A 22 437 437 HOH HOH . G 4 HOH A 23 438 438 HOH HOH . G 4 HOH A 24 440 440 HOH HOH . G 4 HOH A 25 441 441 HOH HOH . G 4 HOH A 26 442 442 HOH HOH . G 4 HOH A 27 443 443 HOH HOH . G 4 HOH A 28 446 446 HOH HOH . G 4 HOH A 29 447 447 HOH HOH . G 4 HOH A 30 449 449 HOH HOH . G 4 HOH A 31 450 450 HOH HOH . G 4 HOH A 32 451 451 HOH HOH . G 4 HOH A 33 452 452 HOH HOH . G 4 HOH A 34 453 453 HOH HOH . G 4 HOH A 35 456 456 HOH HOH . G 4 HOH A 36 457 457 HOH HOH . G 4 HOH A 37 459 459 HOH HOH . G 4 HOH A 38 460 460 HOH HOH . G 4 HOH A 39 461 461 HOH HOH . G 4 HOH A 40 462 462 HOH HOH . G 4 HOH A 41 466 466 HOH HOH . G 4 HOH A 42 467 467 HOH HOH . G 4 HOH A 43 469 469 HOH HOH . G 4 HOH A 44 470 470 HOH HOH . G 4 HOH A 45 471 471 HOH HOH . G 4 HOH A 46 472 472 HOH HOH . G 4 HOH A 47 473 473 HOH HOH . G 4 HOH A 48 475 475 HOH HOH . G 4 HOH A 49 476 476 HOH HOH . G 4 HOH A 50 478 478 HOH HOH . G 4 HOH A 51 480 480 HOH HOH . G 4 HOH A 52 484 484 HOH HOH . G 4 HOH A 53 488 488 HOH HOH . G 4 HOH A 54 489 489 HOH HOH . G 4 HOH A 55 490 490 HOH HOH . H 4 HOH B 1 403 403 HOH HOH . H 4 HOH B 2 409 409 HOH HOH . H 4 HOH B 3 410 410 HOH HOH . H 4 HOH B 4 411 411 HOH HOH . H 4 HOH B 5 413 413 HOH HOH . H 4 HOH B 6 414 414 HOH HOH . H 4 HOH B 7 415 415 HOH HOH . H 4 HOH B 8 420 420 HOH HOH . H 4 HOH B 9 421 421 HOH HOH . H 4 HOH B 10 426 426 HOH HOH . H 4 HOH B 11 427 427 HOH HOH . H 4 HOH B 12 429 429 HOH HOH . H 4 HOH B 13 433 433 HOH HOH . H 4 HOH B 14 434 434 HOH HOH . H 4 HOH B 15 435 435 HOH HOH . H 4 HOH B 16 439 439 HOH HOH . H 4 HOH B 17 444 444 HOH HOH . H 4 HOH B 18 445 445 HOH HOH . H 4 HOH B 19 448 448 HOH HOH . H 4 HOH B 20 454 454 HOH HOH . H 4 HOH B 21 455 455 HOH HOH . H 4 HOH B 22 458 458 HOH HOH . H 4 HOH B 23 463 463 HOH HOH . H 4 HOH B 24 464 464 HOH HOH . H 4 HOH B 25 465 465 HOH HOH . H 4 HOH B 26 468 468 HOH HOH . H 4 HOH B 27 474 474 HOH HOH . H 4 HOH B 28 477 477 HOH HOH . H 4 HOH B 29 479 479 HOH HOH . H 4 HOH B 30 481 481 HOH HOH . H 4 HOH B 31 482 482 HOH HOH . H 4 HOH B 32 483 483 HOH HOH . H 4 HOH B 33 485 485 HOH HOH . H 4 HOH B 34 486 486 HOH HOH . H 4 HOH B 35 487 487 HOH HOH . H 4 HOH B 36 491 491 HOH HOH . H 4 HOH B 37 492 492 HOH HOH . H 4 HOH B 38 493 493 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2GP . . . D 3 48.173 32.686 0.912 1 25.86 ? P 2GP 105 A 1 HETATM 2 O O1P 2GP . . . D 3 49.401 33.066 0.134 1 27.85 ? O1P 2GP 105 A 1 HETATM 3 O O2P 2GP . . . D 3 48.25 31.277 1.441 1 38.3 ? O2P 2GP 105 A 1 HETATM 4 O O3P 2GP . . . D 3 47.796 33.687 1.99 1 37 ? O3P 2GP 105 A 1 HETATM 5 O O5' 2GP . . . D 3 45.565 33.406 -5.188 1 65 ? O5' 2GP 105 A 1 HETATM 6 C C5' 2GP . . . D 3 46.173 32.288 -4.548 1 23.4 ? C5' 2GP 105 A 1 HETATM 7 C C4' 2GP . . . D 3 46.203 32.524 -3.06 1 36 ? C4' 2GP 105 A 1 HETATM 8 O O4' 2GP . . . D 3 44.942 32.09 -2.492 1 41.35 ? O4' 2GP 105 A 1 HETATM 9 C C3' 2GP . . . D 3 47.262 31.721 -2.338 1 33.49 ? C3' 2GP 105 A 1 HETATM 10 O O3' 2GP . . . D 3 48.494 32.425 -2.342 1 31.01 ? O3' 2GP 105 A 1 HETATM 11 C C2' 2GP . . . D 3 46.668 31.596 -0.943 1 37.86 ? C2' 2GP 105 A 1 HETATM 12 O O2' 2GP . . . D 3 46.974 32.713 -0.145 1 53.88 ? O2' 2GP 105 A 1 HETATM 13 C C1' 2GP . . . D 3 45.161 31.543 -1.206 1 15.98 ? C1' 2GP 105 A 1 HETATM 14 N N9 2GP . . . D 3 44.587 30.195 -1.142 1 21.21 ? N9 2GP 105 A 1 HETATM 15 C C8 2GP . . . D 3 43.389 29.796 -0.581 1 25.52 ? C8 2GP 105 A 1 HETATM 16 N N7 2GP . . . D 3 43.138 28.518 -0.723 1 26.62 ? N7 2GP 105 A 1 HETATM 17 C C5 2GP . . . D 3 44.235 28.042 -1.435 1 6.88 ? C5 2GP 105 A 1 HETATM 18 C C6 2GP . . . D 3 44.549 26.732 -1.829 1 12.5 ? C6 2GP 105 A 1 HETATM 19 O O6 2GP . . . D 3 43.854 25.723 -1.668 1 21.27 ? O6 2GP 105 A 1 HETATM 20 N N1 2GP . . . D 3 45.761 26.679 -2.526 1 17.37 ? N1 2GP 105 A 1 HETATM 21 C C2 2GP . . . D 3 46.563 27.766 -2.788 1 20.06 ? C2 2GP 105 A 1 HETATM 22 N N2 2GP . . . D 3 47.694 27.537 -3.466 1 14.64 ? N2 2GP 105 A 1 HETATM 23 N N3 2GP . . . D 3 46.297 28.996 -2.382 1 34.5 ? N3 2GP 105 A 1 HETATM 24 C C4 2GP . . . D 3 45.133 29.058 -1.702 1 8.07 ? C4 2GP 105 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #