data_1TRQ # _model_server_result.job_id lRlkeQ-E7KiPXJ7snYwU3w _model_server_result.datetime_utc '2024-10-14 20:25:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1trq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 1TRQ # _exptl.entry_id 1TRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.29 _cell.angle_gamma 90 _cell.entry_id 1TRQ _cell.length_a 49.34 _cell.length_b 48.2 _cell.length_c 40.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf3 B SG CYS 2 B CYS 202 1_555 B SG CYS 10 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 B SG CYS 6 B CYS 206 1_555 B SG CYS 103 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc1 C CA CA . A CA 106 1_555 A OD2 ASP 15 A ASP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 C CA CA . A CA 106 1_555 A OD1 ASP 15 A ASP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc3 C CA CA . A CA 106 1_555 G O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 C CA CA . A CA 106 1_555 G O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 C CA CA . A CA 106 1_555 G O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.219 ? metalc ? metalc6 E CA CA . B CA 306 1_555 H O HOH . B HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc7 E CA CA . B CA 306 1_555 H O HOH . B HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? metalc ? metalc8 E CA CA . B CA 306 1_555 H O HOH . B HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc9 E CA CA . B CA 306 1_555 B OD1 ASP 15 B ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc10 E CA CA . B CA 306 1_555 H O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc11 E CA CA . B CA 306 1_555 B OD2 ASP 15 B ASP 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc12 E CA CA . B CA 306 1_555 H O HOH . B HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 2GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TRQ _atom_sites.fract_transf_matrix[1][1] 0.020268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000103 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 106 106 CA CA . D 3 2GP A 1 105 105 2GP 2GP . E 2 CA B 1 306 306 CA CA . F 3 2GP B 1 305 305 2GP 2GP . G 4 HOH A 1 402 402 HOH HOH . G 4 HOH A 2 403 403 HOH HOH . G 4 HOH A 3 404 404 HOH HOH . G 4 HOH A 4 405 405 HOH HOH . G 4 HOH A 5 411 411 HOH HOH . G 4 HOH A 6 416 416 HOH HOH . G 4 HOH A 7 419 419 HOH HOH . G 4 HOH A 8 420 420 HOH HOH . G 4 HOH A 9 424 424 HOH HOH . G 4 HOH A 10 425 425 HOH HOH . G 4 HOH A 11 426 426 HOH HOH . G 4 HOH A 12 428 428 HOH HOH . G 4 HOH A 13 429 429 HOH HOH . G 4 HOH A 14 435 435 HOH HOH . G 4 HOH A 15 437 437 HOH HOH . G 4 HOH A 16 439 439 HOH HOH . G 4 HOH A 17 441 441 HOH HOH . G 4 HOH A 18 447 447 HOH HOH . G 4 HOH A 19 448 448 HOH HOH . G 4 HOH A 20 449 449 HOH HOH . G 4 HOH A 21 451 451 HOH HOH . G 4 HOH A 22 453 453 HOH HOH . G 4 HOH A 23 454 454 HOH HOH . G 4 HOH A 24 455 455 HOH HOH . G 4 HOH A 25 457 457 HOH HOH . G 4 HOH A 26 459 459 HOH HOH . G 4 HOH A 27 462 462 HOH HOH . G 4 HOH A 28 464 464 HOH HOH . G 4 HOH A 29 465 465 HOH HOH . G 4 HOH A 30 466 466 HOH HOH . G 4 HOH A 31 467 467 HOH HOH . G 4 HOH A 32 468 468 HOH HOH . G 4 HOH A 33 471 471 HOH HOH . G 4 HOH A 34 476 476 HOH HOH . G 4 HOH A 35 477 477 HOH HOH . G 4 HOH A 36 478 478 HOH HOH . G 4 HOH A 37 481 481 HOH HOH . G 4 HOH A 38 482 482 HOH HOH . G 4 HOH A 39 483 483 HOH HOH . G 4 HOH A 40 484 484 HOH HOH . G 4 HOH A 41 485 485 HOH HOH . G 4 HOH A 42 486 486 HOH HOH . G 4 HOH A 43 489 489 HOH HOH . G 4 HOH A 44 499 499 HOH HOH . G 4 HOH A 45 500 500 HOH HOH . G 4 HOH A 46 501 501 HOH HOH . G 4 HOH A 47 502 502 HOH HOH . G 4 HOH A 48 504 504 HOH HOH . G 4 HOH A 49 505 505 HOH HOH . G 4 HOH A 50 506 506 HOH HOH . G 4 HOH A 51 508 508 HOH HOH . G 4 HOH A 52 509 509 HOH HOH . G 4 HOH A 53 511 511 HOH HOH . G 4 HOH A 54 516 516 HOH HOH . G 4 HOH A 55 517 517 HOH HOH . G 4 HOH A 56 518 518 HOH HOH . H 4 HOH B 1 400 400 HOH HOH . H 4 HOH B 2 401 401 HOH HOH . H 4 HOH B 3 406 406 HOH HOH . H 4 HOH B 4 407 407 HOH HOH . H 4 HOH B 5 408 408 HOH HOH . H 4 HOH B 6 409 409 HOH HOH . H 4 HOH B 7 410 410 HOH HOH . H 4 HOH B 8 412 412 HOH HOH . H 4 HOH B 9 413 413 HOH HOH . H 4 HOH B 10 414 414 HOH HOH . H 4 HOH B 11 415 415 HOH HOH . H 4 HOH B 12 417 417 HOH HOH . H 4 HOH B 13 418 418 HOH HOH . H 4 HOH B 14 421 421 HOH HOH . H 4 HOH B 15 422 422 HOH HOH . H 4 HOH B 16 423 423 HOH HOH . H 4 HOH B 17 427 427 HOH HOH . H 4 HOH B 18 430 430 HOH HOH . H 4 HOH B 19 431 431 HOH HOH . H 4 HOH B 20 432 432 HOH HOH . H 4 HOH B 21 433 433 HOH HOH . H 4 HOH B 22 434 434 HOH HOH . H 4 HOH B 23 436 436 HOH HOH . H 4 HOH B 24 438 438 HOH HOH . H 4 HOH B 25 440 440 HOH HOH . H 4 HOH B 26 442 442 HOH HOH . H 4 HOH B 27 443 443 HOH HOH . H 4 HOH B 28 444 444 HOH HOH . H 4 HOH B 29 445 445 HOH HOH . H 4 HOH B 30 446 446 HOH HOH . H 4 HOH B 31 450 450 HOH HOH . H 4 HOH B 32 452 452 HOH HOH . H 4 HOH B 33 456 456 HOH HOH . H 4 HOH B 34 458 458 HOH HOH . H 4 HOH B 35 460 460 HOH HOH . H 4 HOH B 36 461 461 HOH HOH . H 4 HOH B 37 463 463 HOH HOH . H 4 HOH B 38 469 469 HOH HOH . H 4 HOH B 39 470 470 HOH HOH . H 4 HOH B 40 472 472 HOH HOH . H 4 HOH B 41 473 473 HOH HOH . H 4 HOH B 42 474 474 HOH HOH . H 4 HOH B 43 475 475 HOH HOH . H 4 HOH B 44 479 479 HOH HOH . H 4 HOH B 45 480 480 HOH HOH . H 4 HOH B 46 487 487 HOH HOH . H 4 HOH B 47 488 488 HOH HOH . H 4 HOH B 48 490 490 HOH HOH . H 4 HOH B 49 491 491 HOH HOH . H 4 HOH B 50 492 492 HOH HOH . H 4 HOH B 51 493 493 HOH HOH . H 4 HOH B 52 494 494 HOH HOH . H 4 HOH B 53 495 495 HOH HOH . H 4 HOH B 54 496 496 HOH HOH . H 4 HOH B 55 497 497 HOH HOH . H 4 HOH B 56 498 498 HOH HOH . H 4 HOH B 57 503 503 HOH HOH . H 4 HOH B 58 507 507 HOH HOH . H 4 HOH B 59 510 510 HOH HOH . H 4 HOH B 60 512 512 HOH HOH . H 4 HOH B 61 513 513 HOH HOH . H 4 HOH B 62 514 514 HOH HOH . H 4 HOH B 63 515 515 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2GP . . . F 3 26.363 16.145 21.229 1 25.24 ? P 2GP 305 B 1 HETATM 2 O O1P 2GP . . . F 3 26.885 15.37 22.416 1 37.26 ? O1P 2GP 305 B 1 HETATM 3 O O2P 2GP . . . F 3 25.452 15.33 20.34 1 63.86 ? O2P 2GP 305 B 1 HETATM 4 O O3P 2GP . . . F 3 25.778 17.485 21.601 1 46.9 ? O3P 2GP 305 B 1 HETATM 5 O O5' 2GP . . . F 3 29.189 15.832 15.306 1 65 ? O5' 2GP 305 B 1 HETATM 6 C C5' 2GP . . . F 3 28.481 16.902 15.922 1 27.15 ? C5' 2GP 305 B 1 HETATM 7 C C4' 2GP . . . F 3 28.432 16.717 17.428 1 16.82 ? C4' 2GP 305 B 1 HETATM 8 O O4' 2GP . . . F 3 29.564 17.384 18.032 1 22.92 ? O4' 2GP 305 B 1 HETATM 9 C C3' 2GP . . . F 3 27.219 17.334 18.104 1 24.69 ? C3' 2GP 305 B 1 HETATM 10 O O3' 2GP . . . F 3 26.126 16.417 18.075 1 45.35 ? O3' 2GP 305 B 1 HETATM 11 C C2' 2GP . . . F 3 27.726 17.597 19.522 1 38.89 ? C2' 2GP 305 B 1 HETATM 12 O O2' 2GP . . . F 3 27.653 16.46 20.351 1 19.69 ? O2' 2GP 305 B 1 HETATM 13 C C1' 2GP . . . F 3 29.198 17.914 19.291 1 21.43 ? C1' 2GP 305 B 1 HETATM 14 N N9 2GP . . . F 3 29.519 19.333 19.32 1 29.65 ? N9 2GP 305 B 1 HETATM 15 C C8 2GP . . . F 3 30.541 19.879 20.058 1 19.2 ? C8 2GP 305 B 1 HETATM 16 N N7 2GP . . . F 3 30.659 21.166 19.9 1 18.39 ? N7 2GP 305 B 1 HETATM 17 C C5 2GP . . . F 3 29.657 21.488 18.989 1 23.69 ? C5 2GP 305 B 1 HETATM 18 C C6 2GP . . . F 3 29.293 22.737 18.444 1 65 ? C6 2GP 305 B 1 HETATM 19 O O6 2GP . . . F 3 29.803 23.844 18.669 1 62.35 ? O6 2GP 305 B 1 HETATM 20 N N1 2GP . . . F 3 28.205 22.624 17.576 1 38.84 ? N1 2GP 305 B 1 HETATM 21 C C2 2GP . . . F 3 27.549 21.451 17.284 1 25.14 ? C2 2GP 305 B 1 HETATM 22 N N2 2GP . . . F 3 26.551 21.529 16.393 1 43.27 ? N2 2GP 305 B 1 HETATM 23 N N3 2GP . . . F 3 27.889 20.274 17.781 1 56.89 ? N3 2GP 305 B 1 HETATM 24 C C4 2GP . . . F 3 28.939 20.372 18.631 1 26.95 ? C4 2GP 305 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 663 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #