data_1TSN
#
_model_server_result.job_id            tD_rc2bjSB5RLMEc0T_BFg 
_model_server_result.datetime_utc      '2024-11-27 11:23:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tsn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":265}' 
#
_entry.id    1TSN 
#
_exptl.entry_id    1TSN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              326.172 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1TSN 
_cell.length_a            72.1 
_cell.length_b            72.1 
_cell.length_c            115.27 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TSN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 76.846667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 C C5 UFP . A UFP 265 1_555 D C11 C2F . A C2F 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale3 C F5 UFP . A UFP 265 1_555 D C11 C2F . A C2F 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C9 H12 F N2 O8 P' 
_chem_comp.formula_weight    326.172 
_chem_comp.id                UFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UFP sing 444 n n 
N1 C6 UFP sing 445 n n 
N1 C1' UFP sing 446 n n 
C2 N3 UFP sing 447 n n 
C2 O2 UFP doub 448 n n 
N3 C4 UFP sing 449 n n 
N3 HN3 UFP sing 450 n n 
C4 C5 UFP sing 451 n n 
C4 O4 UFP doub 452 n n 
C5 C6 UFP doub 453 n n 
C5 F5 UFP sing 454 n n 
C6 H6 UFP sing 455 n n 
C1' C2' UFP sing 456 n n 
C1' O4' UFP sing 457 n n 
C1' H1' UFP sing 458 n n 
C2' C3' UFP sing 459 n n 
C2' "H2'1" UFP sing 460 n n 
C2' "H2'2" UFP sing 461 n n 
C3' C4' UFP sing 462 n n 
C3' O3' UFP sing 463 n n 
C3' H3' UFP sing 464 n n 
C4' O4' UFP sing 465 n n 
C4' C5' UFP sing 466 n n 
C4' H4' UFP sing 467 n n 
O3' HO3' UFP sing 468 n n 
C5' O5' UFP sing 469 n n 
C5' "H5'1" UFP sing 470 n n 
C5' "H5'2" UFP sing 471 n n 
O5' P UFP sing 472 n n 
P O1P UFP doub 473 n n 
P O2P UFP sing 474 n n 
P O3P UFP sing 475 n n 
O2P HOP2 UFP sing 476 n n 
O3P HOP3 UFP sing 477 n n 
#
_atom_sites.entry_id                     1TSN 
_atom_sites.fract_transf_matrix[1][1]    0.01387 
_atom_sites.fract_transf_matrix[1][2]    0.008008 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008675 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 267 267 PO4 PO4 . 
C 3 UFP A 1 265 265 UFP UFP . 
D 4 C2F A 1 266 266 C2F C2F . 
E 5 HOH A 1 270 270 HOH HOH . 
E 5 HOH A 2 271 271 HOH HOH . 
E 5 HOH A 3 272 272 HOH HOH . 
E 5 HOH A 4 273 273 HOH HOH . 
E 5 HOH A 5 274 274 HOH HOH . 
E 5 HOH A 6 275 275 HOH HOH . 
E 5 HOH A 7 276 276 HOH HOH . 
E 5 HOH A 8 277 277 HOH HOH . 
E 5 HOH A 9 278 278 HOH HOH . 
E 5 HOH A 10 279 279 HOH HOH . 
E 5 HOH A 11 280 280 HOH HOH . 
E 5 HOH A 12 281 281 HOH HOH . 
E 5 HOH A 13 282 282 HOH HOH . 
E 5 HOH A 14 283 283 HOH HOH . 
E 5 HOH A 15 284 284 HOH HOH . 
E 5 HOH A 16 285 285 HOH HOH . 
E 5 HOH A 17 286 286 HOH HOH . 
E 5 HOH A 18 287 287 HOH HOH . 
E 5 HOH A 19 288 288 HOH HOH . 
E 5 HOH A 20 289 289 HOH HOH . 
E 5 HOH A 21 290 290 HOH HOH . 
E 5 HOH A 22 291 291 HOH HOH . 
E 5 HOH A 23 292 292 HOH HOH . 
E 5 HOH A 24 293 293 HOH HOH . 
E 5 HOH A 25 294 294 HOH HOH . 
E 5 HOH A 26 295 295 HOH HOH . 
E 5 HOH A 27 296 296 HOH HOH . 
E 5 HOH A 28 297 297 HOH HOH . 
E 5 HOH A 29 298 298 HOH HOH . 
E 5 HOH A 30 299 299 HOH HOH . 
E 5 HOH A 31 300 300 HOH HOH . 
E 5 HOH A 32 301 301 HOH HOH . 
E 5 HOH A 33 302 302 HOH HOH . 
E 5 HOH A 34 303 303 HOH HOH . 
E 5 HOH A 35 304 304 HOH HOH . 
E 5 HOH A 36 305 305 HOH HOH . 
E 5 HOH A 37 306 306 HOH HOH . 
E 5 HOH A 38 307 307 HOH HOH . 
E 5 HOH A 39 308 308 HOH HOH . 
E 5 HOH A 40 309 309 HOH HOH . 
E 5 HOH A 41 310 310 HOH HOH . 
E 5 HOH A 42 311 311 HOH HOH . 
E 5 HOH A 43 312 312 HOH HOH . 
E 5 HOH A 44 313 313 HOH HOH . 
E 5 HOH A 45 314 314 HOH HOH . 
E 5 HOH A 46 315 315 HOH HOH . 
E 5 HOH A 47 316 316 HOH HOH . 
E 5 HOH A 48 317 317 HOH HOH . 
E 5 HOH A 49 318 318 HOH HOH . 
E 5 HOH A 50 319 319 HOH HOH . 
E 5 HOH A 51 320 320 HOH HOH . 
E 5 HOH A 52 321 321 HOH HOH . 
E 5 HOH A 53 322 322 HOH HOH . 
E 5 HOH A 54 323 323 HOH HOH . 
E 5 HOH A 55 324 324 HOH HOH . 
E 5 HOH A 56 325 325 HOH HOH . 
E 5 HOH A 57 326 326 HOH HOH . 
E 5 HOH A 58 327 327 HOH HOH . 
E 5 HOH A 59 328 328 HOH HOH . 
E 5 HOH A 60 329 329 HOH HOH . 
E 5 HOH A 61 330 330 HOH HOH . 
E 5 HOH A 62 331 331 HOH HOH . 
E 5 HOH A 63 332 332 HOH HOH . 
E 5 HOH A 64 333 333 HOH HOH . 
E 5 HOH A 65 334 334 HOH HOH . 
E 5 HOH A 66 335 335 HOH HOH . 
E 5 HOH A 67 336 336 HOH HOH . 
E 5 HOH A 68 337 337 HOH HOH . 
E 5 HOH A 69 338 338 HOH HOH . 
E 5 HOH A 70 339 339 HOH HOH . 
E 5 HOH A 71 340 340 HOH HOH . 
E 5 HOH A 72 341 341 HOH HOH . 
E 5 HOH A 73 342 342 HOH HOH . 
E 5 HOH A 74 343 343 HOH HOH . 
E 5 HOH A 75 344 344 HOH HOH . 
E 5 HOH A 76 345 345 HOH HOH . 
E 5 HOH A 77 346 346 HOH HOH . 
E 5 HOH A 78 347 347 HOH HOH . 
E 5 HOH A 79 348 348 HOH HOH . 
E 5 HOH A 80 349 349 HOH HOH . 
E 5 HOH A 81 350 350 HOH HOH . 
E 5 HOH A 82 351 351 HOH HOH . 
E 5 HOH A 83 352 352 HOH HOH . 
E 5 HOH A 84 353 353 HOH HOH . 
E 5 HOH A 85 354 354 HOH HOH . 
E 5 HOH A 86 355 355 HOH HOH . 
E 5 HOH A 87 356 356 HOH HOH . 
E 5 HOH A 88 357 357 HOH HOH . 
E 5 HOH A 89 358 358 HOH HOH . 
E 5 HOH A 90 359 359 HOH HOH . 
E 5 HOH A 91 360 360 HOH HOH . 
E 5 HOH A 92 361 361 HOH HOH . 
E 5 HOH A 93 362 362 HOH HOH . 
E 5 HOH A 94 363 363 HOH HOH . 
E 5 HOH A 95 364 364 HOH HOH . 
E 5 HOH A 96 365 365 HOH HOH . 
E 5 HOH A 97 366 366 HOH HOH . 
E 5 HOH A 98 367 367 HOH HOH . 
E 5 HOH A 99 368 368 HOH HOH . 
E 5 HOH A 100 369 369 HOH HOH . 
E 5 HOH A 101 370 370 HOH HOH . 
E 5 HOH A 102 371 371 HOH HOH . 
E 5 HOH A 103 372 372 HOH HOH . 
E 5 HOH A 104 373 373 HOH HOH . 
E 5 HOH A 105 374 374 HOH HOH . 
E 5 HOH A 106 375 375 HOH HOH . 
E 5 HOH A 107 376 376 HOH HOH . 
E 5 HOH A 108 377 377 HOH HOH . 
E 5 HOH A 109 378 378 HOH HOH . 
E 5 HOH A 110 379 379 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UFP . . . C 3 43.446 -15.246 39.904 1 15.28 ? N1 UFP 265 A 1 
HETATM 2 C C2 UFP . . . C 3 44.356 -14.798 38.984 1 15.91 ? C2 UFP 265 A 1 
HETATM 3 N N3 UFP . . . C 3 43.947 -14.428 37.71 1 16.78 ? N3 UFP 265 A 1 
HETATM 4 C C4 UFP . . . C 3 42.653 -14.508 37.22 1 18.06 ? C4 UFP 265 A 1 
HETATM 5 C C5 UFP . . . C 3 41.58 -15.446 38.04 1 17.87 ? C5 UFP 265 A 1 
HETATM 6 C C6 UFP . . . C 3 41.942 -15.243 39.594 1 19.27 ? C6 UFP 265 A 1 
HETATM 7 O O2 UFP . . . C 3 45.555 -14.691 39.202 1 14.77 ? O2 UFP 265 A 1 
HETATM 8 O O4 UFP . . . C 3 42.326 -14.062 36.106 1 19.05 ? O4 UFP 265 A 1 
HETATM 9 F F5 UFP . . . C 3 40.31 -15.286 37.713 1 19.54 ? F5 UFP 265 A 1 
HETATM 10 C C1' UFP . . . C 3 43.796 -15.776 41.21 1 13.63 ? C1' UFP 265 A 1 
HETATM 11 C C2' UFP . . . C 3 44.161 -14.662 42.155 1 13.13 ? C2' UFP 265 A 1 
HETATM 12 C C3' UFP . . . C 3 43.829 -15.376 43.471 1 13.42 ? C3' UFP 265 A 1 
HETATM 13 C C4' UFP . . . C 3 42.563 -16.169 43.183 1 13.38 ? C4' UFP 265 A 1 
HETATM 14 O O3' UFP . . . C 3 44.918 -16.205 43.839 1 13.96 ? O3' UFP 265 A 1 
HETATM 15 O O4' UFP . . . C 3 42.593 -16.45 41.742 1 16.12 ? O4' UFP 265 A 1 
HETATM 16 C C5' UFP . . . C 3 41.228 -15.432 43.472 1 15.09 ? C5' UFP 265 A 1 
HETATM 17 O O5' UFP . . . C 3 41.112 -15.299 44.931 1 15.68 ? O5' UFP 265 A 1 
HETATM 18 P P UFP . . . C 3 40.682 -13.899 45.544 1 15.08 ? P UFP 265 A 1 
HETATM 19 O O1P UFP . . . C 3 39.396 -13.484 44.98 1 17.46 ? O1P UFP 265 A 1 
HETATM 20 O O2P UFP . . . C 3 41.731 -12.895 45.391 1 18.43 ? O2P UFP 265 A 1 
HETATM 21 O O3P UFP . . . C 3 40.662 -14.411 47.027 1 15.77 ? O3P UFP 265 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#