data_1TT2 # _model_server_result.job_id jexZWQwBR3U0YvnLSJmMvQ _model_server_result.datetime_utc '2024-10-11 10:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 1TT2 # _exptl.entry_id 1TT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.188 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "THYMIDINE-3',5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TT2 _cell.length_a 47.368 _cell.length_b 47.368 _cell.length_c 63.296 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 21 1_555 B CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 B CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc4 G O HOH . A HOH 216 1_555 B CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc5 G O HOH . A HOH 217 1_555 B CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc6 G O HOH . A HOH 218 1_555 B CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc7 E O4P THP . A THP 501 1_555 B CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? # _chem_comp.formula 'C10 H16 N2 O11 P2' _chem_comp.formula_weight 402.188 _chem_comp.id THP _chem_comp.mon_nstd_flag . _chem_comp.name "THYMIDINE-3',5'-DIPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P2 O4P THP doub 299 n n P2 O5P THP sing 300 n n P2 O6P THP sing 301 n n P2 O5' THP sing 302 n n O5P HOP5 THP sing 303 n n O6P HOP6 THP sing 304 n n P1 O1P THP doub 305 n n P1 O2P THP sing 306 n n P1 O3P THP sing 307 n n P1 O3' THP sing 308 n n O2P HOP2 THP sing 309 n n O3P HOP3 THP sing 310 n n O5' C5' THP sing 311 n n C5' C4' THP sing 312 n n C5' "H5'1" THP sing 313 n n C5' "H5'2" THP sing 314 n n C4' O4' THP sing 315 n n C4' C3' THP sing 316 n n C4' H4' THP sing 317 n n O4' C1' THP sing 318 n n C3' O3' THP sing 319 n n C3' C2' THP sing 320 n n C3' H3' THP sing 321 n n C2' C1' THP sing 322 n n C2' "H2'1" THP sing 323 n n C2' "H2'2" THP sing 324 n n C1' N1 THP sing 325 n n C1' H1' THP sing 326 n n N1 C2 THP sing 327 n n N1 C6 THP sing 328 n n C2 O2 THP doub 329 n n C2 N3 THP sing 330 n n N3 C4 THP sing 331 n n N3 H3 THP sing 332 n n C4 O4 THP doub 333 n n C4 C5 THP sing 334 n n C5 C5M THP sing 335 n n C5 C6 THP doub 336 n n C5M H51 THP sing 337 n n C5M H52 THP sing 338 n n C5M H53 THP sing 339 n n C6 H6 THP sing 340 n n # _atom_sites.entry_id 1TT2 _atom_sites.fract_transf_matrix[1][1] 0.021111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 502 502 CA CA . C 3 DMS A 1 402 402 DMS DMS . D 3 DMS A 1 403 403 DMS DMS . E 4 THP A 1 501 501 THP THP . F 5 GOL A 1 401 401 GOL GOL . G 6 HOH A 1 201 201 HOH HOH . G 6 HOH A 2 202 202 HOH HOH . G 6 HOH A 3 203 203 HOH HOH . G 6 HOH A 4 204 204 HOH HOH . G 6 HOH A 5 205 205 HOH HOH . G 6 HOH A 6 206 206 HOH HOH . G 6 HOH A 7 207 207 HOH HOH . G 6 HOH A 8 208 208 HOH HOH . G 6 HOH A 9 209 209 HOH HOH . G 6 HOH A 10 210 210 HOH HOH . G 6 HOH A 11 211 211 HOH HOH . G 6 HOH A 12 212 212 HOH HOH . G 6 HOH A 13 213 213 HOH HOH . G 6 HOH A 14 214 214 HOH HOH . G 6 HOH A 15 215 215 HOH HOH . G 6 HOH A 16 216 216 HOH HOH . G 6 HOH A 17 217 217 HOH HOH . G 6 HOH A 18 218 218 HOH HOH . G 6 HOH A 19 219 219 HOH HOH . G 6 HOH A 20 220 220 HOH HOH . G 6 HOH A 21 221 221 HOH HOH . G 6 HOH A 22 222 222 HOH HOH . G 6 HOH A 23 223 223 HOH HOH . G 6 HOH A 24 224 224 HOH HOH . G 6 HOH A 25 225 225 HOH HOH . G 6 HOH A 26 226 226 HOH HOH . G 6 HOH A 27 227 227 HOH HOH . G 6 HOH A 28 228 228 HOH HOH . G 6 HOH A 29 229 229 HOH HOH . G 6 HOH A 30 230 230 HOH HOH . G 6 HOH A 31 231 231 HOH HOH . G 6 HOH A 32 232 232 HOH HOH . G 6 HOH A 33 233 233 HOH HOH . G 6 HOH A 34 234 234 HOH HOH . G 6 HOH A 35 235 235 HOH HOH . G 6 HOH A 36 236 236 HOH HOH . G 6 HOH A 37 237 237 HOH HOH . G 6 HOH A 38 238 238 HOH HOH . G 6 HOH A 39 239 239 HOH HOH . G 6 HOH A 40 240 240 HOH HOH . G 6 HOH A 41 241 241 HOH HOH . G 6 HOH A 42 242 242 HOH HOH . G 6 HOH A 43 243 243 HOH HOH . G 6 HOH A 44 244 244 HOH HOH . G 6 HOH A 45 245 245 HOH HOH . G 6 HOH A 46 246 246 HOH HOH . G 6 HOH A 47 247 247 HOH HOH . G 6 HOH A 48 248 248 HOH HOH . G 6 HOH A 49 249 249 HOH HOH . G 6 HOH A 50 250 250 HOH HOH . G 6 HOH A 51 251 251 HOH HOH . G 6 HOH A 52 252 252 HOH HOH . G 6 HOH A 53 253 253 HOH HOH . G 6 HOH A 54 254 254 HOH HOH . G 6 HOH A 55 255 255 HOH HOH . G 6 HOH A 56 256 256 HOH HOH . G 6 HOH A 57 257 257 HOH HOH . G 6 HOH A 58 258 258 HOH HOH . G 6 HOH A 59 259 259 HOH HOH . G 6 HOH A 60 260 260 HOH HOH . G 6 HOH A 61 261 261 HOH HOH . G 6 HOH A 62 262 262 HOH HOH . G 6 HOH A 63 263 263 HOH HOH . G 6 HOH A 64 264 264 HOH HOH . G 6 HOH A 65 265 265 HOH HOH . G 6 HOH A 66 266 266 HOH HOH . G 6 HOH A 67 267 267 HOH HOH . G 6 HOH A 68 268 268 HOH HOH . G 6 HOH A 69 269 269 HOH HOH . G 6 HOH A 70 270 270 HOH HOH . G 6 HOH A 71 271 271 HOH HOH . G 6 HOH A 72 272 272 HOH HOH . G 6 HOH A 73 273 273 HOH HOH . G 6 HOH A 74 274 274 HOH HOH . G 6 HOH A 75 275 275 HOH HOH . G 6 HOH A 76 276 276 HOH HOH . G 6 HOH A 77 277 277 HOH HOH . G 6 HOH A 78 278 278 HOH HOH . G 6 HOH A 79 279 279 HOH HOH . G 6 HOH A 80 280 280 HOH HOH . G 6 HOH A 81 281 281 HOH HOH . G 6 HOH A 82 282 282 HOH HOH . G 6 HOH A 83 283 283 HOH HOH . G 6 HOH A 84 284 284 HOH HOH . G 6 HOH A 85 285 285 HOH HOH . G 6 HOH A 86 286 286 HOH HOH . G 6 HOH A 87 287 287 HOH HOH . G 6 HOH A 88 288 288 HOH HOH . G 6 HOH A 89 289 289 HOH HOH . G 6 HOH A 90 290 290 HOH HOH . G 6 HOH A 91 291 291 HOH HOH . G 6 HOH A 92 292 292 HOH HOH . G 6 HOH A 93 293 293 HOH HOH . G 6 HOH A 94 294 294 HOH HOH . G 6 HOH A 95 295 295 HOH HOH . G 6 HOH A 96 296 296 HOH HOH . G 6 HOH A 97 297 297 HOH HOH . G 6 HOH A 98 298 298 HOH HOH . G 6 HOH A 99 299 299 HOH HOH . G 6 HOH A 100 300 300 HOH HOH . G 6 HOH A 101 301 301 HOH HOH . G 6 HOH A 102 302 302 HOH HOH . G 6 HOH A 103 303 303 HOH HOH . G 6 HOH A 104 304 304 HOH HOH . G 6 HOH A 105 305 305 HOH HOH . G 6 HOH A 106 306 306 HOH HOH . G 6 HOH A 107 307 307 HOH HOH . G 6 HOH A 108 308 308 HOH HOH . G 6 HOH A 109 309 309 HOH HOH . G 6 HOH A 110 310 310 HOH HOH . G 6 HOH A 111 311 311 HOH HOH . G 6 HOH A 112 312 312 HOH HOH . G 6 HOH A 113 313 313 HOH HOH . G 6 HOH A 114 314 314 HOH HOH . G 6 HOH A 115 315 315 HOH HOH . G 6 HOH A 116 316 316 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P2 THP . . . E 4 5.869 13.755 21.341 1 17.18 ? P2 THP 501 A 1 HETATM 2 O O4P THP . . . E 4 4.702 13.662 20.436 1 16.74 ? O4P THP 501 A 1 HETATM 3 O O5P THP . . . E 4 7.084 14.488 20.932 1 14.47 ? O5P THP 501 A 1 HETATM 4 O O6P THP . . . E 4 6.268 12.28 21.769 1 13.98 ? O6P THP 501 A 1 HETATM 5 P P1 THP . . . E 4 4.306 11.53 27.101 1 25.16 ? P1 THP 501 A 1 HETATM 6 O O1P THP . . . E 4 3.192 10.975 26.332 1 28.81 ? O1P THP 501 A 1 HETATM 7 O O2P THP . . . E 4 4.621 11.301 28.521 1 27 ? O2P THP 501 A 1 HETATM 8 O O3P THP . . . E 4 5.63 11.188 26.286 1 25.29 ? O3P THP 501 A 1 HETATM 9 O O5' THP . . . E 4 5.416 14.391 22.697 1 17.69 ? O5' THP 501 A 1 HETATM 10 C C5' THP . . . E 4 4.295 13.959 23.413 1 18.75 ? C5' THP 501 A 1 HETATM 11 C C4' THP . . . E 4 4.671 14.12 24.868 1 18.02 ? C4' THP 501 A 1 HETATM 12 O O4' THP . . . E 4 4.938 15.498 25.1 1 17.68 ? O4' THP 501 A 1 HETATM 13 C C3' THP . . . E 4 3.529 13.731 25.76 1 20.46 ? C3' THP 501 A 1 HETATM 14 O O3' THP . . . E 4 4.045 13.121 26.956 1 22.58 ? O3' THP 501 A 1 HETATM 15 C C2' THP . . . E 4 2.829 15.011 26.084 1 18.38 ? C2' THP 501 A 1 HETATM 16 C C1' THP . . . E 4 3.997 16.004 26.039 1 16.88 ? C1' THP 501 A 1 HETATM 17 N N1 THP . . . E 4 3.434 17.277 25.585 1 16.13 ? N1 THP 501 A 1 HETATM 18 C C2 THP . . . E 4 3.024 18.181 26.554 1 16.16 ? C2 THP 501 A 1 HETATM 19 O O2 THP . . . E 4 3.107 17.979 27.754 1 17.94 ? O2 THP 501 A 1 HETATM 20 N N3 THP . . . E 4 2.499 19.359 26.108 1 14.2 ? N3 THP 501 A 1 HETATM 21 C C4 THP . . . E 4 2.346 19.718 24.783 1 13.45 ? C4 THP 501 A 1 HETATM 22 O O4 THP . . . E 4 1.857 20.809 24.54 1 13.86 ? O4 THP 501 A 1 HETATM 23 C C5 THP . . . E 4 2.792 18.74 23.804 1 11.27 ? C5 THP 501 A 1 HETATM 24 C C5M THP . . . E 4 2.667 19.044 22.296 1 13.28 ? C5M THP 501 A 1 HETATM 25 C C6 THP . . . E 4 3.313 17.569 24.228 1 14.47 ? C6 THP 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #