data_1TTP # _model_server_result.job_id 6McTtCvuxSizKcbDoITwAA _model_server_result.datetime_utc '2024-11-15 22:22:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ttp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 1TTP # _exptl.entry_id 1TTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.8 _cell.angle_gamma 90 _cell.entry_id 1TTP _cell.length_a 185.3 _cell.length_b 61.3 _cell.length_c 68.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 185.3 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 87 B LYS 87 1_555 E C4A PLP . B PLP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? metalc ? metalc1 B O GLY 54 B GLY 54 1_555 D CS CS . B CS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.262 ? metalc ? metalc2 B O PRO 56 B PRO 56 1_555 D CS CS . B CS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.586 ? metalc ? metalc3 B O VAL 231 B VAL 231 1_555 C CS CS . B CS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.433 ? metalc ? metalc4 B O GLY 232 B GLY 232 1_555 C CS CS . B CS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc5 B O GLY 268 B GLY 268 1_555 C CS CS . B CS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.376 ? metalc ? metalc6 B O PHE 306 B PHE 306 1_555 C CS CS . B CS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.256 ? metalc ? metalc7 B O SER 308 B SER 308 1_555 C CS CS . B CS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.444 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 1TTP _atom_sites.fract_transf_matrix[1][1] 0.005397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000453 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CS B 1 400 400 CS CS . D 3 CS B 1 401 401 CS CS . E 4 PLP B 1 402 87 PLP PLP . F 5 HOH A 1 402 402 HOH HOH . F 5 HOH A 2 403 403 HOH HOH . F 5 HOH A 3 404 404 HOH HOH . F 5 HOH A 4 405 405 HOH HOH . F 5 HOH A 5 406 406 HOH HOH . F 5 HOH A 6 411 411 HOH HOH . G 5 HOH B 1 407 407 HOH HOH . G 5 HOH B 2 408 408 HOH HOH . G 5 HOH B 3 409 409 HOH HOH . G 5 HOH B 4 410 410 HOH HOH . G 5 HOH B 5 412 412 HOH HOH . G 5 HOH B 6 413 413 HOH HOH . G 5 HOH B 7 414 414 HOH HOH . G 5 HOH B 8 415 415 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . E 4 85.37 13.45 12.053 1 31.51 ? N1 PLP 402 B 1 HETATM 2 C C2 PLP . . . E 4 85.608 14.1 10.843 1 31.95 ? C2 PLP 402 B 1 HETATM 3 C C2A PLP . . . E 4 87.014 14.04 10.313 1 34.04 ? C2A PLP 402 B 1 HETATM 4 C C3 PLP . . . E 4 84.493 14.893 10.297 1 32.74 ? C3 PLP 402 B 1 HETATM 5 O O3 PLP . . . E 4 84.711 15.574 9.122 1 36.55 ? O3 PLP 402 B 1 HETATM 6 C C4 PLP . . . E 4 83.136 14.99 11.079 1 31.08 ? C4 PLP 402 B 1 HETATM 7 C C4A PLP . . . E 4 81.798 15.516 10.247 1 27.71 ? C4A PLP 402 B 1 HETATM 8 C C5 PLP . . . E 4 82.999 14.283 12.387 1 28.63 ? C5 PLP 402 B 1 HETATM 9 C C6 PLP . . . E 4 84.172 13.479 12.814 1 30.47 ? C6 PLP 402 B 1 HETATM 10 C C5A PLP . . . E 4 82.012 14.606 13.454 1 22.46 ? C5A PLP 402 B 1 HETATM 11 O O4P PLP . . . E 4 81.045 13.719 13.663 1 17.33 ? O4P PLP 402 B 1 HETATM 12 P P PLP . . . E 4 80.927 12.221 13.823 1 21.03 ? P PLP 402 B 1 HETATM 13 O O1P PLP . . . E 4 79.5 12.012 13.901 1 18.79 ? O1P PLP 402 B 1 HETATM 14 O O2P PLP . . . E 4 81.657 11.877 15.119 1 26.62 ? O2P PLP 402 B 1 HETATM 15 O O3P PLP . . . E 4 81.464 11.382 12.927 1 20.49 ? O3P PLP 402 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #