data_1TTQ
#
_model_server_result.job_id            Y4_eK_dwcwMskE74V88eEg 
_model_server_result.datetime_utc      '2024-11-24 18:39:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ttq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    1TTQ 
#
_exptl.entry_id    1TTQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.7 
_cell.angle_gamma         90 
_cell.entry_id            1TTQ 
_cell.length_a            185 
_cell.length_b            61.3 
_cell.length_c            67.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TTQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 185 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 87 B LYS 87 1_555 D C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
metalc ? metalc1 B O GLY 232 B GLY 232 1_555 C K K . B K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc2 B O PHE 306 B PHE 306 1_555 C K K . B K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc3 B O SER 308 B SER 308 1_555 C K K . B K 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? 
metalc ? metalc4 C K K . B K 400 1_555 F O HOH . B HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     1TTQ 
_atom_sites.fract_transf_matrix[1][1]    0.005405 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016313 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014821 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 K B 1 400 400 K K . 
D 4 PLP B 1 401 87 PLP PLP . 
E 5 HOH A 1 401 401 HOH HOH . 
E 5 HOH A 2 402 402 HOH HOH . 
E 5 HOH A 3 403 403 HOH HOH . 
E 5 HOH A 4 404 404 HOH HOH . 
E 5 HOH A 5 405 405 HOH HOH . 
E 5 HOH A 6 406 406 HOH HOH . 
E 5 HOH A 7 407 407 HOH HOH . 
E 5 HOH A 8 408 408 HOH HOH . 
E 5 HOH A 9 409 409 HOH HOH . 
E 5 HOH A 10 413 413 HOH HOH . 
E 5 HOH A 11 435 435 HOH HOH . 
E 5 HOH A 12 443 443 HOH HOH . 
E 5 HOH A 13 444 444 HOH HOH . 
E 5 HOH A 14 449 449 HOH HOH . 
E 5 HOH A 15 450 450 HOH HOH . 
E 5 HOH A 16 465 465 HOH HOH . 
E 5 HOH A 17 466 466 HOH HOH . 
E 5 HOH A 18 468 468 HOH HOH . 
E 5 HOH A 19 469 469 HOH HOH . 
E 5 HOH A 20 470 470 HOH HOH . 
E 5 HOH A 21 471 471 HOH HOH . 
F 5 HOH B 1 410 410 HOH HOH . 
F 5 HOH B 2 411 411 HOH HOH . 
F 5 HOH B 3 412 412 HOH HOH . 
F 5 HOH B 4 414 414 HOH HOH . 
F 5 HOH B 5 415 415 HOH HOH . 
F 5 HOH B 6 416 416 HOH HOH . 
F 5 HOH B 7 417 417 HOH HOH . 
F 5 HOH B 8 418 418 HOH HOH . 
F 5 HOH B 9 419 419 HOH HOH . 
F 5 HOH B 10 420 420 HOH HOH . 
F 5 HOH B 11 421 421 HOH HOH . 
F 5 HOH B 12 422 422 HOH HOH . 
F 5 HOH B 13 423 423 HOH HOH . 
F 5 HOH B 14 424 424 HOH HOH . 
F 5 HOH B 15 425 425 HOH HOH . 
F 5 HOH B 16 426 426 HOH HOH . 
F 5 HOH B 17 427 427 HOH HOH . 
F 5 HOH B 18 428 428 HOH HOH . 
F 5 HOH B 19 429 429 HOH HOH . 
F 5 HOH B 20 430 430 HOH HOH . 
F 5 HOH B 21 431 431 HOH HOH . 
F 5 HOH B 22 432 432 HOH HOH . 
F 5 HOH B 23 433 433 HOH HOH . 
F 5 HOH B 24 434 434 HOH HOH . 
F 5 HOH B 25 436 436 HOH HOH . 
F 5 HOH B 26 437 437 HOH HOH . 
F 5 HOH B 27 438 438 HOH HOH . 
F 5 HOH B 28 439 439 HOH HOH . 
F 5 HOH B 29 440 440 HOH HOH . 
F 5 HOH B 30 441 441 HOH HOH . 
F 5 HOH B 31 442 442 HOH HOH . 
F 5 HOH B 32 445 445 HOH HOH . 
F 5 HOH B 33 446 446 HOH HOH . 
F 5 HOH B 34 447 447 HOH HOH . 
F 5 HOH B 35 448 448 HOH HOH . 
F 5 HOH B 36 451 451 HOH HOH . 
F 5 HOH B 37 452 452 HOH HOH . 
F 5 HOH B 38 453 453 HOH HOH . 
F 5 HOH B 39 454 454 HOH HOH . 
F 5 HOH B 40 455 455 HOH HOH . 
F 5 HOH B 41 456 456 HOH HOH . 
F 5 HOH B 42 457 457 HOH HOH . 
F 5 HOH B 43 458 458 HOH HOH . 
F 5 HOH B 44 459 459 HOH HOH . 
F 5 HOH B 45 460 460 HOH HOH . 
F 5 HOH B 46 461 461 HOH HOH . 
F 5 HOH B 47 462 462 HOH HOH . 
F 5 HOH B 48 463 463 HOH HOH . 
F 5 HOH B 49 464 464 HOH HOH . 
F 5 HOH B 50 467 467 HOH HOH . 
F 5 HOH B 51 472 472 HOH HOH . 
F 5 HOH B 52 473 473 HOH HOH . 
F 5 HOH B 53 474 474 HOH HOH . 
F 5 HOH B 54 475 475 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 4 85.748 13.965 11.921 1 31.54 ? N1 PLP 401 B 1 
HETATM 2 C C2 PLP . . . D 4 85.73 14.137 10.56 1 37.17 ? C2 PLP 401 B 1 
HETATM 3 C C2A PLP . . . D 4 87.079 14.215 9.89 1 36.97 ? C2A PLP 401 B 1 
HETATM 4 C C3 PLP . . . D 4 84.43 14.367 9.941 1 38.28 ? C3 PLP 401 B 1 
HETATM 5 O O3 PLP . . . D 4 84.342 14.532 8.601 1 44.25 ? O3 PLP 401 B 1 
HETATM 6 C C4 PLP . . . D 4 83.19 14.431 10.819 1 34.78 ? C4 PLP 401 B 1 
HETATM 7 C C4A PLP . . . D 4 81.76 14.398 10.096 1 33.99 ? C4A PLP 401 B 1 
HETATM 8 C C5 PLP . . . D 4 83.32 14.27 12.237 1 28.82 ? C5 PLP 401 B 1 
HETATM 9 C C6 PLP . . . D 4 84.641 13.998 12.75 1 32.3 ? C6 PLP 401 B 1 
HETATM 10 C C5A PLP . . . D 4 82.273 14.638 13.238 1 20.14 ? C5A PLP 401 B 1 
HETATM 11 O O4P PLP . . . D 4 81.113 13.899 13.243 1 20.17 ? O4P PLP 401 B 1 
HETATM 12 P P PLP . . . D 4 80.657 12.587 13.817 1 19.7 ? P PLP 401 B 1 
HETATM 13 O O1P PLP . . . D 4 79.254 12.481 13.393 1 20.88 ? O1P PLP 401 B 1 
HETATM 14 O O2P PLP . . . D 4 80.793 12.769 15.345 1 15.43 ? O2P PLP 401 B 1 
HETATM 15 O O3P PLP . . . D 4 81.366 11.375 13.477 1 13.49 ? O3P PLP 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#