data_1TU9 # _model_server_result.job_id YINUM3oQ9I_KS6JZUnkzUQ _model_server_result.datetime_utc '2025-02-05 15:57:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 1TU9 # _exptl.entry_id 1TU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TU9 _cell.length_a 52.557 _cell.length_b 52.557 _cell.length_c 182.628 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 77 1_555 B FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 B FE HEM . A HEM 301 1_555 C O1 PPI . A PPI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1TU9 _atom_sites.fract_transf_matrix[1][1] 0.019027 _atom_sites.fract_transf_matrix[1][2] 0.010985 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 301 301 HEM HEM . C 3 PPI A 1 302 302 PPI PPI . D 4 EDO A 1 303 303 EDO EDO . E 4 EDO A 1 304 304 EDO EDO . F 5 HOH A 1 305 1 HOH HOH . F 5 HOH A 2 306 2 HOH HOH . F 5 HOH A 3 307 3 HOH HOH . F 5 HOH A 4 308 4 HOH HOH . F 5 HOH A 5 309 5 HOH HOH . F 5 HOH A 6 310 6 HOH HOH . F 5 HOH A 7 311 7 HOH HOH . F 5 HOH A 8 312 8 HOH HOH . F 5 HOH A 9 313 9 HOH HOH . F 5 HOH A 10 314 10 HOH HOH . F 5 HOH A 11 315 12 HOH HOH . F 5 HOH A 12 316 13 HOH HOH . F 5 HOH A 13 317 14 HOH HOH . F 5 HOH A 14 318 15 HOH HOH . F 5 HOH A 15 319 16 HOH HOH . F 5 HOH A 16 320 17 HOH HOH . F 5 HOH A 17 321 18 HOH HOH . F 5 HOH A 18 322 19 HOH HOH . F 5 HOH A 19 323 20 HOH HOH . F 5 HOH A 20 324 21 HOH HOH . F 5 HOH A 21 325 22 HOH HOH . F 5 HOH A 22 326 23 HOH HOH . F 5 HOH A 23 327 24 HOH HOH . F 5 HOH A 24 328 25 HOH HOH . F 5 HOH A 25 329 26 HOH HOH . F 5 HOH A 26 330 27 HOH HOH . F 5 HOH A 27 331 28 HOH HOH . F 5 HOH A 28 332 29 HOH HOH . F 5 HOH A 29 333 30 HOH HOH . F 5 HOH A 30 334 31 HOH HOH . F 5 HOH A 31 335 32 HOH HOH . F 5 HOH A 32 336 33 HOH HOH . F 5 HOH A 33 337 34 HOH HOH . F 5 HOH A 34 338 35 HOH HOH . F 5 HOH A 35 339 36 HOH HOH . F 5 HOH A 36 340 37 HOH HOH . F 5 HOH A 37 341 38 HOH HOH . F 5 HOH A 38 342 39 HOH HOH . F 5 HOH A 39 343 40 HOH HOH . F 5 HOH A 40 344 41 HOH HOH . F 5 HOH A 41 345 42 HOH HOH . F 5 HOH A 42 346 43 HOH HOH . F 5 HOH A 43 347 44 HOH HOH . F 5 HOH A 44 348 45 HOH HOH . F 5 HOH A 45 349 46 HOH HOH . F 5 HOH A 46 350 47 HOH HOH . F 5 HOH A 47 351 48 HOH HOH . F 5 HOH A 48 352 49 HOH HOH . F 5 HOH A 49 353 50 HOH HOH . F 5 HOH A 50 354 51 HOH HOH . F 5 HOH A 51 355 52 HOH HOH . F 5 HOH A 52 356 53 HOH HOH . F 5 HOH A 53 357 54 HOH HOH . F 5 HOH A 54 358 55 HOH HOH . F 5 HOH A 55 359 56 HOH HOH . F 5 HOH A 56 360 57 HOH HOH . F 5 HOH A 57 361 58 HOH HOH . F 5 HOH A 58 362 59 HOH HOH . F 5 HOH A 59 363 60 HOH HOH . F 5 HOH A 60 364 61 HOH HOH . F 5 HOH A 61 365 62 HOH HOH . F 5 HOH A 62 366 63 HOH HOH . F 5 HOH A 63 367 64 HOH HOH . F 5 HOH A 64 368 65 HOH HOH . F 5 HOH A 65 369 66 HOH HOH . F 5 HOH A 66 370 67 HOH HOH . F 5 HOH A 67 371 68 HOH HOH . F 5 HOH A 68 372 69 HOH HOH . F 5 HOH A 69 373 71 HOH HOH . F 5 HOH A 70 374 72 HOH HOH . F 5 HOH A 71 375 73 HOH HOH . F 5 HOH A 72 376 74 HOH HOH . F 5 HOH A 73 377 75 HOH HOH . F 5 HOH A 74 378 76 HOH HOH . F 5 HOH A 75 379 77 HOH HOH . F 5 HOH A 76 380 78 HOH HOH . F 5 HOH A 77 381 79 HOH HOH . F 5 HOH A 78 382 80 HOH HOH . F 5 HOH A 79 383 81 HOH HOH . F 5 HOH A 80 384 82 HOH HOH . F 5 HOH A 81 385 83 HOH HOH . F 5 HOH A 82 386 85 HOH HOH . F 5 HOH A 83 387 86 HOH HOH . F 5 HOH A 84 388 88 HOH HOH . F 5 HOH A 85 389 89 HOH HOH . F 5 HOH A 86 390 90 HOH HOH . F 5 HOH A 87 391 91 HOH HOH . F 5 HOH A 88 392 92 HOH HOH . F 5 HOH A 89 393 94 HOH HOH . F 5 HOH A 90 394 95 HOH HOH . F 5 HOH A 91 395 96 HOH HOH . F 5 HOH A 92 396 97 HOH HOH . F 5 HOH A 93 397 98 HOH HOH . F 5 HOH A 94 398 99 HOH HOH . F 5 HOH A 95 399 100 HOH HOH . F 5 HOH A 96 400 101 HOH HOH . F 5 HOH A 97 401 102 HOH HOH . F 5 HOH A 98 402 103 HOH HOH . F 5 HOH A 99 403 104 HOH HOH . F 5 HOH A 100 404 105 HOH HOH . F 5 HOH A 101 405 106 HOH HOH . F 5 HOH A 102 406 107 HOH HOH . F 5 HOH A 103 407 108 HOH HOH . F 5 HOH A 104 408 109 HOH HOH . F 5 HOH A 105 409 110 HOH HOH . F 5 HOH A 106 410 111 HOH HOH . F 5 HOH A 107 411 112 HOH HOH . F 5 HOH A 108 412 113 HOH HOH . F 5 HOH A 109 413 114 HOH HOH . F 5 HOH A 110 414 115 HOH HOH . F 5 HOH A 111 415 116 HOH HOH . F 5 HOH A 112 416 117 HOH HOH . F 5 HOH A 113 417 118 HOH HOH . F 5 HOH A 114 418 119 HOH HOH . F 5 HOH A 115 419 120 HOH HOH . F 5 HOH A 116 420 121 HOH HOH . F 5 HOH A 117 421 122 HOH HOH . F 5 HOH A 118 422 123 HOH HOH . F 5 HOH A 119 423 124 HOH HOH . F 5 HOH A 120 424 125 HOH HOH . F 5 HOH A 121 425 126 HOH HOH . F 5 HOH A 122 426 127 HOH HOH . F 5 HOH A 123 427 128 HOH HOH . F 5 HOH A 124 428 129 HOH HOH . F 5 HOH A 125 429 130 HOH HOH . F 5 HOH A 126 430 131 HOH HOH . F 5 HOH A 127 431 132 HOH HOH . F 5 HOH A 128 432 133 HOH HOH . F 5 HOH A 129 433 134 HOH HOH . F 5 HOH A 130 434 135 HOH HOH . F 5 HOH A 131 435 136 HOH HOH . F 5 HOH A 132 436 137 HOH HOH . F 5 HOH A 133 437 138 HOH HOH . F 5 HOH A 134 438 139 HOH HOH . F 5 HOH A 135 439 140 HOH HOH . F 5 HOH A 136 440 141 HOH HOH . F 5 HOH A 137 441 142 HOH HOH . F 5 HOH A 138 442 145 HOH HOH . F 5 HOH A 139 443 146 HOH HOH . F 5 HOH A 140 444 147 HOH HOH . F 5 HOH A 141 445 148 HOH HOH . F 5 HOH A 142 446 149 HOH HOH . F 5 HOH A 143 447 150 HOH HOH . F 5 HOH A 144 448 151 HOH HOH . F 5 HOH A 145 449 153 HOH HOH . F 5 HOH A 146 450 154 HOH HOH . F 5 HOH A 147 451 155 HOH HOH . F 5 HOH A 148 452 156 HOH HOH . F 5 HOH A 149 453 157 HOH HOH . F 5 HOH A 150 454 158 HOH HOH . F 5 HOH A 151 455 159 HOH HOH . F 5 HOH A 152 456 160 HOH HOH . F 5 HOH A 153 457 161 HOH HOH . F 5 HOH A 154 458 162 HOH HOH . F 5 HOH A 155 459 163 HOH HOH . F 5 HOH A 156 460 164 HOH HOH . F 5 HOH A 157 461 165 HOH HOH . F 5 HOH A 158 462 166 HOH HOH . F 5 HOH A 159 463 167 HOH HOH . F 5 HOH A 160 464 169 HOH HOH . F 5 HOH A 161 465 170 HOH HOH . F 5 HOH A 162 466 171 HOH HOH . F 5 HOH A 163 467 172 HOH HOH . F 5 HOH A 164 468 173 HOH HOH . F 5 HOH A 165 469 174 HOH HOH . F 5 HOH A 166 470 175 HOH HOH . F 5 HOH A 167 471 176 HOH HOH . F 5 HOH A 168 472 178 HOH HOH . F 5 HOH A 169 473 179 HOH HOH . F 5 HOH A 170 474 180 HOH HOH . F 5 HOH A 171 475 181 HOH HOH . F 5 HOH A 172 476 182 HOH HOH . F 5 HOH A 173 477 183 HOH HOH . F 5 HOH A 174 478 184 HOH HOH . F 5 HOH A 175 479 185 HOH HOH . F 5 HOH A 176 480 186 HOH HOH . F 5 HOH A 177 481 187 HOH HOH . F 5 HOH A 178 482 188 HOH HOH . F 5 HOH A 179 483 190 HOH HOH . F 5 HOH A 180 484 191 HOH HOH . F 5 HOH A 181 485 192 HOH HOH . F 5 HOH A 182 486 193 HOH HOH . F 5 HOH A 183 487 194 HOH HOH . F 5 HOH A 184 488 195 HOH HOH . F 5 HOH A 185 489 196 HOH HOH . F 5 HOH A 186 490 197 HOH HOH . F 5 HOH A 187 491 199 HOH HOH . F 5 HOH A 188 492 200 HOH HOH . F 5 HOH A 189 493 201 HOH HOH . F 5 HOH A 190 494 203 HOH HOH . F 5 HOH A 191 495 204 HOH HOH . F 5 HOH A 192 496 206 HOH HOH . F 5 HOH A 193 497 208 HOH HOH . F 5 HOH A 194 498 209 HOH HOH . F 5 HOH A 195 499 211 HOH HOH . F 5 HOH A 196 500 213 HOH HOH . F 5 HOH A 197 501 215 HOH HOH . F 5 HOH A 198 502 216 HOH HOH . F 5 HOH A 199 503 220 HOH HOH . F 5 HOH A 200 504 222 HOH HOH . F 5 HOH A 201 505 223 HOH HOH . F 5 HOH A 202 506 225 HOH HOH . F 5 HOH A 203 507 226 HOH HOH . F 5 HOH A 204 508 227 HOH HOH . F 5 HOH A 205 509 228 HOH HOH . F 5 HOH A 206 510 229 HOH HOH . F 5 HOH A 207 511 230 HOH HOH . F 5 HOH A 208 512 231 HOH HOH . F 5 HOH A 209 513 232 HOH HOH . F 5 HOH A 210 514 233 HOH HOH . F 5 HOH A 211 515 234 HOH HOH . F 5 HOH A 212 516 235 HOH HOH . F 5 HOH A 213 517 236 HOH HOH . F 5 HOH A 214 518 237 HOH HOH . F 5 HOH A 215 519 238 HOH HOH . F 5 HOH A 216 520 239 HOH HOH . F 5 HOH A 217 521 240 HOH HOH . F 5 HOH A 218 522 241 HOH HOH . F 5 HOH A 219 523 242 HOH HOH . F 5 HOH A 220 524 243 HOH HOH . F 5 HOH A 221 525 244 HOH HOH . F 5 HOH A 222 526 245 HOH HOH . F 5 HOH A 223 527 246 HOH HOH . F 5 HOH A 224 528 247 HOH HOH . F 5 HOH A 225 529 248 HOH HOH . F 5 HOH A 226 530 249 HOH HOH . F 5 HOH A 227 531 250 HOH HOH . F 5 HOH A 228 532 251 HOH HOH . F 5 HOH A 229 533 252 HOH HOH . F 5 HOH A 230 534 253 HOH HOH . F 5 HOH A 231 535 254 HOH HOH . F 5 HOH A 232 536 255 HOH HOH . F 5 HOH A 233 537 256 HOH HOH . F 5 HOH A 234 538 257 HOH HOH . F 5 HOH A 235 539 258 HOH HOH . F 5 HOH A 236 540 259 HOH HOH . F 5 HOH A 237 541 260 HOH HOH . F 5 HOH A 238 542 261 HOH HOH . F 5 HOH A 239 543 262 HOH HOH . F 5 HOH A 240 544 263 HOH HOH . F 5 HOH A 241 545 264 HOH HOH . F 5 HOH A 242 546 265 HOH HOH . F 5 HOH A 243 547 266 HOH HOH . F 5 HOH A 244 548 267 HOH HOH . F 5 HOH A 245 549 268 HOH HOH . F 5 HOH A 246 550 269 HOH HOH . F 5 HOH A 247 551 270 HOH HOH . F 5 HOH A 248 552 271 HOH HOH . F 5 HOH A 249 553 272 HOH HOH . F 5 HOH A 250 554 273 HOH HOH . F 5 HOH A 251 555 274 HOH HOH . F 5 HOH A 252 556 275 HOH HOH . F 5 HOH A 253 557 276 HOH HOH . F 5 HOH A 254 558 277 HOH HOH . F 5 HOH A 255 559 278 HOH HOH . F 5 HOH A 256 560 279 HOH HOH . F 5 HOH A 257 561 280 HOH HOH . F 5 HOH A 258 562 281 HOH HOH . F 5 HOH A 259 563 282 HOH HOH . F 5 HOH A 260 564 283 HOH HOH . F 5 HOH A 261 565 284 HOH HOH . F 5 HOH A 262 566 285 HOH HOH . F 5 HOH A 263 567 286 HOH HOH . F 5 HOH A 264 568 287 HOH HOH . F 5 HOH A 265 569 288 HOH HOH . F 5 HOH A 266 570 289 HOH HOH . F 5 HOH A 267 571 290 HOH HOH . F 5 HOH A 268 572 291 HOH HOH . F 5 HOH A 269 573 292 HOH HOH . F 5 HOH A 270 574 293 HOH HOH . F 5 HOH A 271 575 294 HOH HOH . F 5 HOH A 272 576 295 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -2.885 23.118 -1.27 1 11.32 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 4 -2.944 23.266 -2.672 1 10.37 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 4 -2.006 21.941 -0.885 1 13.35 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 4 -2.547 20.696 -1.311 1 15.01 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #