data_1TUB # _model_server_result.job_id dnA_iD_zms7xRye_DvoJjQ _model_server_result.datetime_utc '2024-11-23 09:07:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 1TUB # _exptl.entry_id 1TUB _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 807.879 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TAXOTERE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TUB _cell.length_a 80 _cell.length_b 92 _cell.length_c 90 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OH TYR 224 A TYR 224 1_555 C O2' GTP . A GTP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? covale ? covale2 B OE1 GLN 15 B GLN 15 1_555 D O6 GDP . B GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale3 B CA GLY 141 B GLY 143 1_555 D O1B GDP . B GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale4 B C GLY 141 B GLY 143 1_555 D O1B GDP . B GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale5 B O GLY 141 B GLY 143 1_555 D O3B GDP . B GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? covale ? covale6 B CB SER 176 B SER 178 1_555 D O3' GDP . B GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale7 B CD2 HIS 227 B HIS 229 1_555 E C37 TXL . B TXL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale8 B CD2 HIS 227 B HIS 229 1_555 E C38 TXL . B TXL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? covale ? covale9 B O ARG 359 B ARG 369 1_555 E O9 TXL . B TXL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? covale ? covale10 B O ARG 359 B ARG 369 1_555 E O10 TXL . B TXL 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? # _chem_comp.formula 'C43 H53 N O14' _chem_comp.formula_weight 807.879 _chem_comp.id TXL _chem_comp.mon_nstd_flag . _chem_comp.name TAXOTERE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TXL sing 427 n n C1 C14 TXL sing 428 n n C1 C15 TXL sing 429 n n C1 O1 TXL sing 430 n n C2 C3 TXL sing 431 n n C2 O2 TXL sing 432 n n C2 H2 TXL sing 433 n n C3 C4 TXL sing 434 n n C3 C8 TXL sing 435 n n C3 H3 TXL sing 436 n n C4 C5 TXL sing 437 n n C4 C20 TXL sing 438 n n C4 O3 TXL sing 439 n n C5 C6 TXL sing 440 n n C5 O4 TXL sing 441 n n C5 H5 TXL sing 442 n n C6 C7 TXL sing 443 n n C6 H61 TXL sing 444 n n C6 H62 TXL sing 445 n n C7 C8 TXL sing 446 n n C7 O5 TXL sing 447 n n C7 H7 TXL sing 448 n n C8 C9 TXL sing 449 n n C8 C19 TXL sing 450 n n C9 C10 TXL sing 451 n n C9 O6 TXL doub 452 n n C10 C11 TXL sing 453 n n C10 O7 TXL sing 454 n n C10 H10 TXL sing 455 n n C11 C12 TXL doub 456 n n C11 C15 TXL sing 457 n n C12 C13 TXL sing 458 n n C12 C18 TXL sing 459 n n C13 C14 TXL sing 460 n n C13 O8 TXL sing 461 n n C13 H13 TXL sing 462 n n C14 H141 TXL sing 463 n n C14 H142 TXL sing 464 n n C15 C16 TXL sing 465 n n C15 C17 TXL sing 466 n n C16 H161 TXL sing 467 n n C16 H162 TXL sing 468 n n C16 H163 TXL sing 469 n n C17 H171 TXL sing 470 n n C17 H172 TXL sing 471 n n C17 H173 TXL sing 472 n n C18 H181 TXL sing 473 n n C18 H182 TXL sing 474 n n C18 H183 TXL sing 475 n n C19 H191 TXL sing 476 n n C19 H192 TXL sing 477 n n C19 H193 TXL sing 478 n n C20 O4 TXL sing 479 n n C20 H201 TXL sing 480 n n C20 H202 TXL sing 481 n n O1 HO1 TXL sing 482 n n O2 C35 TXL sing 483 n n O3 C42 TXL sing 484 n n O5 HO5 TXL sing 485 n n O7 HO7 TXL sing 486 n n O8 C21 TXL sing 487 n n C21 O9 TXL doub 488 n n C21 C22 TXL sing 489 n n C22 O10 TXL sing 490 n n C22 C23 TXL sing 491 n n C22 H22 TXL sing 492 n n O10 HO0 TXL sing 493 n n C23 C24 TXL sing 494 n n C23 N1 TXL sing 495 n n C23 H23 TXL sing 496 n n C24 C25 TXL sing 497 n y C24 C29 TXL doub 498 n y C25 C26 TXL doub 499 n y C25 H25 TXL sing 500 n n C26 C27 TXL sing 501 n y C26 H26 TXL sing 502 n n C27 C28 TXL doub 503 n y C27 H27 TXL sing 504 n n C28 C29 TXL sing 505 n y C28 H28 TXL sing 506 n n C29 H29 TXL sing 507 n n N1 C30 TXL sing 508 n n N1 HN1 TXL sing 509 n n C30 O11 TXL doub 510 n n C30 O12 TXL sing 511 n n O12 C31 TXL sing 512 n n C31 C32 TXL sing 513 n n C31 C33 TXL sing 514 n n C31 C34 TXL sing 515 n n C32 H321 TXL sing 516 n n C32 H322 TXL sing 517 n n C32 H323 TXL sing 518 n n C33 H331 TXL sing 519 n n C33 H332 TXL sing 520 n n C33 H333 TXL sing 521 n n C34 H341 TXL sing 522 n n C34 H342 TXL sing 523 n n C34 H343 TXL sing 524 n n C35 O13 TXL doub 525 n n C35 C36 TXL sing 526 n n C36 C37 TXL doub 527 n y C36 C41 TXL sing 528 n y C37 C38 TXL sing 529 n y C37 H37 TXL sing 530 n n C38 C39 TXL doub 531 n y C38 H38 TXL sing 532 n n C39 C40 TXL sing 533 n y C39 H39 TXL sing 534 n n C40 C41 TXL doub 535 n y C40 H40 TXL sing 536 n n C41 H41 TXL sing 537 n n C42 O14 TXL doub 538 n n C42 C43 TXL sing 539 n n C43 H431 TXL sing 540 n n C43 H432 TXL sing 541 n n C43 H433 TXL sing 542 n n # _atom_sites.entry_id 1TUB _atom_sites.fract_transf_matrix[1][1] 0.0125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP A 1 500 500 GTP GTP . D 4 GDP B 1 500 500 GDP GDP . E 5 TXL B 1 501 1 TXL TXL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TXL . . . E 5 -79.666 26.795 -23.257 1 20 ? C1 TXL 501 B 1 HETATM 2 C C2 TXL . . . E 5 -80.262 26.226 -24.675 1 20 ? C2 TXL 501 B 1 HETATM 3 C C3 TXL . . . E 5 -79.254 26.243 -25.814 1 20 ? C3 TXL 501 B 1 HETATM 4 C C4 TXL . . . E 5 -79.972 26.723 -27.208 1 20 ? C4 TXL 501 B 1 HETATM 5 C C5 TXL . . . E 5 -79.463 26.364 -28.572 1 20 ? C5 TXL 501 B 1 HETATM 6 C C6 TXL . . . E 5 -78.208 25.61 -28.52 1 20 ? C6 TXL 501 B 1 HETATM 7 C C7 TXL . . . E 5 -77.485 25.393 -27.08 1 20 ? C7 TXL 501 B 1 HETATM 8 C C8 TXL . . . E 5 -78.569 25.059 -26.023 1 20 ? C8 TXL 501 B 1 HETATM 9 C C9 TXL . . . E 5 -77.622 24.561 -24.743 1 20 ? C9 TXL 501 B 1 HETATM 10 C C10 TXL . . . E 5 -76.553 25.337 -23.835 1 20 ? C10 TXL 501 B 1 HETATM 11 C C11 TXL . . . E 5 -77.197 26.336 -23.218 1 20 ? C11 TXL 501 B 1 HETATM 12 C C12 TXL . . . E 5 -76.709 27.471 -23.44 1 20 ? C12 TXL 501 B 1 HETATM 13 C C13 TXL . . . E 5 -77.61 28.412 -23.014 1 20 ? C13 TXL 501 B 1 HETATM 14 C C14 TXL . . . E 5 -79.173 28.115 -23.498 1 20 ? C14 TXL 501 B 1 HETATM 15 C C15 TXL . . . E 5 -78.484 26.091 -22.439 1 20 ? C15 TXL 501 B 1 HETATM 16 C C16 TXL . . . E 5 -78.974 24.78 -22.318 1 20 ? C16 TXL 501 B 1 HETATM 17 C C17 TXL . . . E 5 -78.127 26.5 -20.91 1 20 ? C17 TXL 501 B 1 HETATM 18 C C18 TXL . . . E 5 -75.421 27.879 -24.112 1 20 ? C18 TXL 501 B 1 HETATM 19 C C19 TXL . . . E 5 -79.628 24.047 -26.537 1 20 ? C19 TXL 501 B 1 HETATM 20 C C20 TXL . . . E 5 -81.405 26.139 -27.83 1 20 ? C20 TXL 501 B 1 HETATM 21 O O1 TXL . . . E 5 -80.829 26.83 -22.485 1 20 ? O1 TXL 501 B 1 HETATM 22 O O2 TXL . . . E 5 -81.423 26.931 -25.209 1 20 ? O2 TXL 501 B 1 HETATM 23 O O3 TXL . . . E 5 -80.096 27.978 -27.177 1 20 ? O3 TXL 501 B 1 HETATM 24 O O4 TXL . . . E 5 -80.814 25.702 -29.003 1 20 ? O4 TXL 501 B 1 HETATM 25 O O5 TXL . . . E 5 -76.474 24.546 -27.08 1 20 ? O5 TXL 501 B 1 HETATM 26 O O6 TXL . . . E 5 -77.637 23.5 -24.557 1 20 ? O6 TXL 501 B 1 HETATM 27 O O7 TXL . . . E 5 -75.803 24.654 -22.789 1 20 ? O7 TXL 501 B 1 HETATM 28 O O8 TXL . . . E 5 -77.235 29.538 -23.669 1 20 ? O8 TXL 501 B 1 HETATM 29 C C21 TXL . . . E 5 -76.391 30.322 -22.868 1 20 ? C21 TXL 501 B 1 HETATM 30 O O9 TXL . . . E 5 -76.077 30.152 -21.671 1 20 ? O9 TXL 501 B 1 HETATM 31 C C22 TXL . . . E 5 -75.816 31.34 -23.691 1 20 ? C22 TXL 501 B 1 HETATM 32 O O10 TXL . . . E 5 -74.891 32.063 -22.767 1 20 ? O10 TXL 501 B 1 HETATM 33 C C23 TXL . . . E 5 -76.937 32.064 -24.467 1 20 ? C23 TXL 501 B 1 HETATM 34 C C24 TXL . . . E 5 -76.224 33.054 -25.27 1 20 ? C24 TXL 501 B 1 HETATM 35 C C25 TXL . . . E 5 -75.853 34.143 -24.74 1 20 ? C25 TXL 501 B 1 HETATM 36 C C26 TXL . . . E 5 -75.058 34.978 -25.434 1 20 ? C26 TXL 501 B 1 HETATM 37 C C27 TXL . . . E 5 -74.638 34.723 -26.685 1 20 ? C27 TXL 501 B 1 HETATM 38 C C28 TXL . . . E 5 -75.048 33.647 -27.243 1 20 ? C28 TXL 501 B 1 HETATM 39 C C29 TXL . . . E 5 -75.829 32.809 -26.553 1 20 ? C29 TXL 501 B 1 HETATM 40 N N1 TXL . . . E 5 -77.832 32.501 -23.491 1 20 ? N1 TXL 501 B 1 HETATM 41 C C30 TXL . . . E 5 -79.221 32.526 -23.868 1 20 ? C30 TXL 501 B 1 HETATM 42 O O11 TXL . . . E 5 -79.893 32.048 -24.856 1 20 ? O11 TXL 501 B 1 HETATM 43 O O12 TXL . . . E 5 -79.766 33.096 -22.879 1 20 ? O12 TXL 501 B 1 HETATM 44 C C31 TXL . . . E 5 -81.302 33.209 -22.954 1 20 ? C31 TXL 501 B 1 HETATM 45 C C32 TXL . . . E 5 -81.347 33.86 -21.66 1 20 ? C32 TXL 501 B 1 HETATM 46 C C33 TXL . . . E 5 -81.827 33.883 -24.235 1 20 ? C33 TXL 501 B 1 HETATM 47 C C34 TXL . . . E 5 -82.05 31.99 -22.876 1 20 ? C34 TXL 501 B 1 HETATM 48 C C35 TXL . . . E 5 -82.758 26.511 -25.084 1 20 ? C35 TXL 501 B 1 HETATM 49 O O13 TXL . . . E 5 -83.057 25.542 -24.545 1 20 ? O13 TXL 501 B 1 HETATM 50 C C36 TXL . . . E 5 -83.766 27.31 -25.69 1 20 ? C36 TXL 501 B 1 HETATM 51 C C37 TXL . . . E 5 -83.399 28.478 -25.976 1 20 ? C37 TXL 501 B 1 HETATM 52 C C38 TXL . . . E 5 -84.444 29.195 -26.575 1 20 ? C38 TXL 501 B 1 HETATM 53 C C39 TXL . . . E 5 -85.691 28.905 -26.883 1 20 ? C39 TXL 501 B 1 HETATM 54 C C40 TXL . . . E 5 -86.113 27.704 -26.777 1 20 ? C40 TXL 501 B 1 HETATM 55 C C41 TXL . . . E 5 -85.176 26.844 -26.064 1 20 ? C41 TXL 501 B 1 HETATM 56 C C42 TXL . . . E 5 -78.907 28.706 -27.332 1 20 ? C42 TXL 501 B 1 HETATM 57 O O14 TXL . . . E 5 -77.798 28.34 -27.407 1 20 ? O14 TXL 501 B 1 HETATM 58 C C43 TXL . . . E 5 -79.252 29.955 -27.376 1 20 ? C43 TXL 501 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 58 #