data_1TUK # _model_server_result.job_id DmHNBNblYCTMmZlgqWozUA _model_server_result.datetime_utc '2024-10-19 11:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tuk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 1TUK # _exptl.entry_id 1TUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.553 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)] _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 127.65 _cell.angle_gamma 90 _cell.entry_id 1TUK _cell.length_a 61.465 _cell.length_b 29.32 _cell.length_c 41.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 34 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 10 A CYS 10 1_555 A SG CYS 24 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 25 A CYS 25 1_555 A SG CYS 60 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 36 A CYS 36 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C22 H44 O9 P -1' _chem_comp.formula_weight 483.553 _chem_comp.id PGM _chem_comp.mon_nstd_flag . _chem_comp.name 1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LYSOPHOSPHATIDYLGLYCEROL # _atom_sites.entry_id 1TUK _atom_sites.fract_transf_matrix[1][1] 0.016269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012552 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 101 101 IOD IDO . C 2 IOD A 1 102 102 IOD IDO . D 3 PGM A 1 103 103 PGM PGM . E 3 PGM A 1 104 104 PGM PGM . F 4 HOH A 1 105 1 HOH HOH . F 4 HOH A 2 106 2 HOH HOH . F 4 HOH A 3 107 3 HOH HOH . F 4 HOH A 4 108 4 HOH HOH . F 4 HOH A 5 109 5 HOH HOH . F 4 HOH A 6 110 6 HOH HOH . F 4 HOH A 7 111 7 HOH HOH . F 4 HOH A 8 112 8 HOH HOH . F 4 HOH A 9 113 9 HOH HOH . F 4 HOH A 10 114 10 HOH HOH . F 4 HOH A 11 115 11 HOH HOH . F 4 HOH A 12 116 12 HOH HOH . F 4 HOH A 13 117 13 HOH HOH . F 4 HOH A 14 118 14 HOH HOH . F 4 HOH A 15 119 15 HOH HOH . F 4 HOH A 16 120 16 HOH HOH . F 4 HOH A 17 121 17 HOH HOH . F 4 HOH A 18 122 18 HOH HOH . F 4 HOH A 19 123 19 HOH HOH . F 4 HOH A 20 124 20 HOH HOH . F 4 HOH A 21 125 22 HOH HOH . F 4 HOH A 22 126 23 HOH HOH . F 4 HOH A 23 127 24 HOH HOH . F 4 HOH A 24 128 25 HOH HOH . F 4 HOH A 25 129 26 HOH HOH . F 4 HOH A 26 130 27 HOH HOH . F 4 HOH A 27 131 28 HOH HOH . F 4 HOH A 28 132 29 HOH HOH . F 4 HOH A 29 133 30 HOH HOH . F 4 HOH A 30 134 31 HOH HOH . F 4 HOH A 31 135 32 HOH HOH . F 4 HOH A 32 136 33 HOH HOH . F 4 HOH A 33 137 34 HOH HOH . F 4 HOH A 34 138 35 HOH HOH . F 4 HOH A 35 139 36 HOH HOH . F 4 HOH A 36 140 37 HOH HOH . F 4 HOH A 37 141 38 HOH HOH . F 4 HOH A 38 142 39 HOH HOH . F 4 HOH A 39 143 40 HOH HOH . F 4 HOH A 40 144 41 HOH HOH . F 4 HOH A 41 145 42 HOH HOH . F 4 HOH A 42 146 43 HOH HOH . F 4 HOH A 43 147 44 HOH HOH . F 4 HOH A 44 148 45 HOH HOH . F 4 HOH A 45 149 46 HOH HOH . F 4 HOH A 46 150 47 HOH HOH . F 4 HOH A 47 151 48 HOH HOH . F 4 HOH A 48 152 49 HOH HOH . F 4 HOH A 49 153 50 HOH HOH . F 4 HOH A 50 154 51 HOH HOH . F 4 HOH A 51 155 52 HOH HOH . F 4 HOH A 52 156 53 HOH HOH . F 4 HOH A 53 157 54 HOH HOH . F 4 HOH A 54 158 55 HOH HOH . F 4 HOH A 55 159 57 HOH HOH . F 4 HOH A 56 160 58 HOH HOH . F 4 HOH A 57 161 59 HOH HOH . F 4 HOH A 58 162 60 HOH HOH . F 4 HOH A 59 163 61 HOH HOH . F 4 HOH A 60 164 62 HOH HOH . F 4 HOH A 61 165 63 HOH HOH . F 4 HOH A 62 166 64 HOH HOH . F 4 HOH A 63 167 65 HOH HOH . F 4 HOH A 64 168 66 HOH HOH . F 4 HOH A 65 169 67 HOH HOH . F 4 HOH A 66 170 68 HOH HOH . F 4 HOH A 67 171 69 HOH HOH . F 4 HOH A 68 172 70 HOH HOH . F 4 HOH A 69 173 71 HOH HOH . F 4 HOH A 70 174 72 HOH HOH . F 4 HOH A 71 175 73 HOH HOH . F 4 HOH A 72 176 75 HOH HOH . F 4 HOH A 73 177 76 HOH HOH . F 4 HOH A 74 178 78 HOH HOH . F 4 HOH A 75 179 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGM . . . D 3 27.283 33.935 13.158 1 60.81 ? C1 PGM 103 A 1 HETATM 2 O O1 PGM . . . D 3 26.293 33.648 14.144 1 61.35 ? O1 PGM 103 A 1 HETATM 3 C C2 PGM . . . D 3 28.546 33.249 13.603 1 59.91 ? C2 PGM 103 A 1 HETATM 4 O O2 PGM . . . D 3 29.403 34.205 14.22 1 61.92 ? O2 PGM 103 A 1 HETATM 5 C C3 PGM . . . D 3 29.297 32.561 12.476 1 59.83 ? C3 PGM 103 A 1 HETATM 6 O O4 PGM . . . D 3 29.2 33.148 11.179 1 58.75 ? O4 PGM 103 A 1 HETATM 7 P P5 PGM . . . D 3 30.358 32.843 10.116 1 55.36 ? P5 PGM 103 A 1 HETATM 8 O O5A PGM . . . D 3 31.331 33.994 10.155 1 57.57 ? O5A PGM 103 A 1 HETATM 9 O O5B PGM . . . D 3 30.835 31.448 10.435 1 58.05 ? O5B PGM 103 A 1 HETATM 10 O O6 PGM . . . D 3 29.66 32.784 8.65 1 53.7 ? O6 PGM 103 A 1 HETATM 11 C C7 PGM . . . D 3 30.293 32.485 7.4 1 50.15 ? C7 PGM 103 A 1 HETATM 12 C C8 PGM . . . D 3 31.79 32.237 7.422 1 49.82 ? C8 PGM 103 A 1 HETATM 13 O O8 PGM . . . D 3 32.628 33.03 6.764 1 51.49 ? O8 PGM 103 A 1 HETATM 14 C C9 PGM . . . D 3 32.298 31.2 8.076 1 47.47 ? C9 PGM 103 A 1 HETATM 15 O OQ1 PGM . . . D 3 34.236 30.458 10.292 1 44.4 ? OQ1 PGM 103 A 1 HETATM 16 O OQ2 PGM . . . D 3 33.729 30.979 8.107 1 46.75 ? OQ2 PGM 103 A 1 HETATM 17 C CA PGM . . . D 3 33.997 30.045 9.182 1 44.24 ? CA PGM 103 A 1 HETATM 18 C CB PGM . . . D 3 33.927 28.569 8.941 1 43.07 ? CB PGM 103 A 1 HETATM 19 C CC PGM . . . D 3 34.853 28.095 7.839 1 41.06 ? CC PGM 103 A 1 HETATM 20 C CD PGM . . . D 3 34.703 26.582 7.714 1 34.15 ? CD PGM 103 A 1 HETATM 21 C CE PGM . . . D 3 35.583 25.813 8.697 1 29.44 ? CE PGM 103 A 1 HETATM 22 C CF PGM . . . D 3 34.979 24.447 8.817 1 26.33 ? CF PGM 103 A 1 HETATM 23 C CG PGM . . . D 3 35.754 23.414 9.588 1 28.8 ? CG PGM 103 A 1 HETATM 24 C CH PGM . . . D 3 35.394 21.989 9.187 1 25.92 ? CH PGM 103 A 1 HETATM 25 C CI PGM . . . D 3 33.918 21.774 8.987 1 26.31 ? CI PGM 103 A 1 HETATM 26 C CJ PGM . . . D 3 33.743 20.352 8.569 1 22.79 ? CJ PGM 103 A 1 HETATM 27 C CK PGM . . . D 3 32.41 20.24 7.847 1 20.74 ? CK PGM 103 A 1 HETATM 28 C CL PGM . . . D 3 31.464 19.456 8.716 1 16.07 ? CL PGM 103 A 1 HETATM 29 C CM PGM . . . D 3 30.105 19.122 8.14 1 14.21 ? CM PGM 103 A 1 HETATM 30 C CN PGM . . . D 3 29.266 18.573 9.237 1 12.06 ? CN PGM 103 A 1 HETATM 31 C CO PGM . . . D 3 27.848 18.206 8.777 1 12.61 ? CO PGM 103 A 1 HETATM 32 C CP PGM . . . D 3 26.999 17.538 9.844 1 16.14 ? CP PGM 103 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #