data_1TUK
#
_model_server_result.job_id            bzB6000tZBlUFZ0Zr-X65w 
_model_server_result.datetime_utc      '2024-12-01 02:28:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tuk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    1TUK 
#
_exptl.entry_id    1TUK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.553 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)] 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.65 
_cell.angle_gamma         90 
_cell.entry_id            1TUK 
_cell.length_a            61.465 
_cell.length_b            29.32 
_cell.length_c            41.55 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TUK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 34 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 A SG CYS 10 A CYS 10 1_555 A SG CYS 24 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 A SG CYS 25 A CYS 25 1_555 A SG CYS 60 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 36 A CYS 36 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C22 H44 O9 P -1' 
_chem_comp.formula_weight    483.553 
_chem_comp.id                PGM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)] 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LYSOPHOSPHATIDYLGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGM sing 218 n n 
C1 C2 PGM sing 219 n n 
C1 HC11 PGM sing 220 n n 
C1 HC12 PGM sing 221 n n 
O1 HO1 PGM sing 222 n n 
C2 O2 PGM sing 223 n n 
C2 C3 PGM sing 224 n n 
C2 HC2 PGM sing 225 n n 
O2 HO2 PGM sing 226 n n 
C3 O4 PGM sing 227 n n 
C3 HC31 PGM sing 228 n n 
C3 HC32 PGM sing 229 n n 
O4 P5 PGM sing 230 n n 
P5 O5A PGM doub 231 n n 
P5 O5B PGM sing 232 n n 
P5 O6 PGM sing 233 n n 
O6 C7 PGM sing 234 n n 
C7 C8 PGM sing 235 n n 
C7 HC71 PGM sing 236 n n 
C7 HC72 PGM sing 237 n n 
C8 O8 PGM sing 238 n n 
C8 C9 PGM sing 239 n n 
C8 HC8 PGM sing 240 n n 
O8 HO8 PGM sing 241 n n 
C9 OQ2 PGM sing 242 n n 
C9 HC91 PGM sing 243 n n 
C9 HC92 PGM sing 244 n n 
OQ1 CA PGM doub 245 n n 
OQ2 CA PGM sing 246 n n 
CA CB PGM sing 247 n n 
CB CC PGM sing 248 n n 
CB HCB1 PGM sing 249 n n 
CB HCB2 PGM sing 250 n n 
CC CD PGM sing 251 n n 
CC HCC1 PGM sing 252 n n 
CC HCC2 PGM sing 253 n n 
CD CE PGM sing 254 n n 
CD HCD1 PGM sing 255 n n 
CD HCD2 PGM sing 256 n n 
CE CF PGM sing 257 n n 
CE HCE1 PGM sing 258 n n 
CE HCE2 PGM sing 259 n n 
CF CG PGM sing 260 n n 
CF HCF1 PGM sing 261 n n 
CF HCF2 PGM sing 262 n n 
CG CH PGM sing 263 n n 
CG HCG1 PGM sing 264 n n 
CG HCG2 PGM sing 265 n n 
CH CI PGM sing 266 n n 
CH HCH1 PGM sing 267 n n 
CH HCH2 PGM sing 268 n n 
CI CJ PGM sing 269 n n 
CI HCI1 PGM sing 270 n n 
CI HCI2 PGM sing 271 n n 
CJ CK PGM sing 272 n n 
CJ HCJ1 PGM sing 273 n n 
CJ HCJ2 PGM sing 274 n n 
CK CL PGM sing 275 n n 
CK HCK1 PGM sing 276 n n 
CK HCK2 PGM sing 277 n n 
CL CM PGM sing 278 n n 
CL HCL1 PGM sing 279 n n 
CL HCL2 PGM sing 280 n n 
CM CN PGM sing 281 n n 
CM HCM1 PGM sing 282 n n 
CM HCM2 PGM sing 283 n n 
CN CO PGM sing 284 n n 
CN HCN1 PGM sing 285 n n 
CN HCN2 PGM sing 286 n n 
CO CP PGM sing 287 n n 
CO HCO1 PGM sing 288 n n 
CO HCO2 PGM sing 289 n n 
CP HCP1 PGM sing 290 n n 
CP HCP2 PGM sing 291 n n 
CP HCP3 PGM sing 292 n n 
#
_atom_sites.entry_id                     1TUK 
_atom_sites.fract_transf_matrix[1][1]    0.016269 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.012552 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030397 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 101 101 IOD IDO . 
C 2 IOD A 1 102 102 IOD IDO . 
D 3 PGM A 1 103 103 PGM PGM . 
E 3 PGM A 1 104 104 PGM PGM . 
F 4 HOH A 1 105 1 HOH HOH . 
F 4 HOH A 2 106 2 HOH HOH . 
F 4 HOH A 3 107 3 HOH HOH . 
F 4 HOH A 4 108 4 HOH HOH . 
F 4 HOH A 5 109 5 HOH HOH . 
F 4 HOH A 6 110 6 HOH HOH . 
F 4 HOH A 7 111 7 HOH HOH . 
F 4 HOH A 8 112 8 HOH HOH . 
F 4 HOH A 9 113 9 HOH HOH . 
F 4 HOH A 10 114 10 HOH HOH . 
F 4 HOH A 11 115 11 HOH HOH . 
F 4 HOH A 12 116 12 HOH HOH . 
F 4 HOH A 13 117 13 HOH HOH . 
F 4 HOH A 14 118 14 HOH HOH . 
F 4 HOH A 15 119 15 HOH HOH . 
F 4 HOH A 16 120 16 HOH HOH . 
F 4 HOH A 17 121 17 HOH HOH . 
F 4 HOH A 18 122 18 HOH HOH . 
F 4 HOH A 19 123 19 HOH HOH . 
F 4 HOH A 20 124 20 HOH HOH . 
F 4 HOH A 21 125 22 HOH HOH . 
F 4 HOH A 22 126 23 HOH HOH . 
F 4 HOH A 23 127 24 HOH HOH . 
F 4 HOH A 24 128 25 HOH HOH . 
F 4 HOH A 25 129 26 HOH HOH . 
F 4 HOH A 26 130 27 HOH HOH . 
F 4 HOH A 27 131 28 HOH HOH . 
F 4 HOH A 28 132 29 HOH HOH . 
F 4 HOH A 29 133 30 HOH HOH . 
F 4 HOH A 30 134 31 HOH HOH . 
F 4 HOH A 31 135 32 HOH HOH . 
F 4 HOH A 32 136 33 HOH HOH . 
F 4 HOH A 33 137 34 HOH HOH . 
F 4 HOH A 34 138 35 HOH HOH . 
F 4 HOH A 35 139 36 HOH HOH . 
F 4 HOH A 36 140 37 HOH HOH . 
F 4 HOH A 37 141 38 HOH HOH . 
F 4 HOH A 38 142 39 HOH HOH . 
F 4 HOH A 39 143 40 HOH HOH . 
F 4 HOH A 40 144 41 HOH HOH . 
F 4 HOH A 41 145 42 HOH HOH . 
F 4 HOH A 42 146 43 HOH HOH . 
F 4 HOH A 43 147 44 HOH HOH . 
F 4 HOH A 44 148 45 HOH HOH . 
F 4 HOH A 45 149 46 HOH HOH . 
F 4 HOH A 46 150 47 HOH HOH . 
F 4 HOH A 47 151 48 HOH HOH . 
F 4 HOH A 48 152 49 HOH HOH . 
F 4 HOH A 49 153 50 HOH HOH . 
F 4 HOH A 50 154 51 HOH HOH . 
F 4 HOH A 51 155 52 HOH HOH . 
F 4 HOH A 52 156 53 HOH HOH . 
F 4 HOH A 53 157 54 HOH HOH . 
F 4 HOH A 54 158 55 HOH HOH . 
F 4 HOH A 55 159 57 HOH HOH . 
F 4 HOH A 56 160 58 HOH HOH . 
F 4 HOH A 57 161 59 HOH HOH . 
F 4 HOH A 58 162 60 HOH HOH . 
F 4 HOH A 59 163 61 HOH HOH . 
F 4 HOH A 60 164 62 HOH HOH . 
F 4 HOH A 61 165 63 HOH HOH . 
F 4 HOH A 62 166 64 HOH HOH . 
F 4 HOH A 63 167 65 HOH HOH . 
F 4 HOH A 64 168 66 HOH HOH . 
F 4 HOH A 65 169 67 HOH HOH . 
F 4 HOH A 66 170 68 HOH HOH . 
F 4 HOH A 67 171 69 HOH HOH . 
F 4 HOH A 68 172 70 HOH HOH . 
F 4 HOH A 69 173 71 HOH HOH . 
F 4 HOH A 70 174 72 HOH HOH . 
F 4 HOH A 71 175 73 HOH HOH . 
F 4 HOH A 72 176 75 HOH HOH . 
F 4 HOH A 73 177 76 HOH HOH . 
F 4 HOH A 74 178 78 HOH HOH . 
F 4 HOH A 75 179 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGM . . . D 3 27.283 33.935 13.158 1 60.81 ? C1 PGM 103 A 1 
HETATM 2 O O1 PGM . . . D 3 26.293 33.648 14.144 1 61.35 ? O1 PGM 103 A 1 
HETATM 3 C C2 PGM . . . D 3 28.546 33.249 13.603 1 59.91 ? C2 PGM 103 A 1 
HETATM 4 O O2 PGM . . . D 3 29.403 34.205 14.22 1 61.92 ? O2 PGM 103 A 1 
HETATM 5 C C3 PGM . . . D 3 29.297 32.561 12.476 1 59.83 ? C3 PGM 103 A 1 
HETATM 6 O O4 PGM . . . D 3 29.2 33.148 11.179 1 58.75 ? O4 PGM 103 A 1 
HETATM 7 P P5 PGM . . . D 3 30.358 32.843 10.116 1 55.36 ? P5 PGM 103 A 1 
HETATM 8 O O5A PGM . . . D 3 31.331 33.994 10.155 1 57.57 ? O5A PGM 103 A 1 
HETATM 9 O O5B PGM . . . D 3 30.835 31.448 10.435 1 58.05 ? O5B PGM 103 A 1 
HETATM 10 O O6 PGM . . . D 3 29.66 32.784 8.65 1 53.7 ? O6 PGM 103 A 1 
HETATM 11 C C7 PGM . . . D 3 30.293 32.485 7.4 1 50.15 ? C7 PGM 103 A 1 
HETATM 12 C C8 PGM . . . D 3 31.79 32.237 7.422 1 49.82 ? C8 PGM 103 A 1 
HETATM 13 O O8 PGM . . . D 3 32.628 33.03 6.764 1 51.49 ? O8 PGM 103 A 1 
HETATM 14 C C9 PGM . . . D 3 32.298 31.2 8.076 1 47.47 ? C9 PGM 103 A 1 
HETATM 15 O OQ1 PGM . . . D 3 34.236 30.458 10.292 1 44.4 ? OQ1 PGM 103 A 1 
HETATM 16 O OQ2 PGM . . . D 3 33.729 30.979 8.107 1 46.75 ? OQ2 PGM 103 A 1 
HETATM 17 C CA PGM . . . D 3 33.997 30.045 9.182 1 44.24 ? CA PGM 103 A 1 
HETATM 18 C CB PGM . . . D 3 33.927 28.569 8.941 1 43.07 ? CB PGM 103 A 1 
HETATM 19 C CC PGM . . . D 3 34.853 28.095 7.839 1 41.06 ? CC PGM 103 A 1 
HETATM 20 C CD PGM . . . D 3 34.703 26.582 7.714 1 34.15 ? CD PGM 103 A 1 
HETATM 21 C CE PGM . . . D 3 35.583 25.813 8.697 1 29.44 ? CE PGM 103 A 1 
HETATM 22 C CF PGM . . . D 3 34.979 24.447 8.817 1 26.33 ? CF PGM 103 A 1 
HETATM 23 C CG PGM . . . D 3 35.754 23.414 9.588 1 28.8 ? CG PGM 103 A 1 
HETATM 24 C CH PGM . . . D 3 35.394 21.989 9.187 1 25.92 ? CH PGM 103 A 1 
HETATM 25 C CI PGM . . . D 3 33.918 21.774 8.987 1 26.31 ? CI PGM 103 A 1 
HETATM 26 C CJ PGM . . . D 3 33.743 20.352 8.569 1 22.79 ? CJ PGM 103 A 1 
HETATM 27 C CK PGM . . . D 3 32.41 20.24 7.847 1 20.74 ? CK PGM 103 A 1 
HETATM 28 C CL PGM . . . D 3 31.464 19.456 8.716 1 16.07 ? CL PGM 103 A 1 
HETATM 29 C CM PGM . . . D 3 30.105 19.122 8.14 1 14.21 ? CM PGM 103 A 1 
HETATM 30 C CN PGM . . . D 3 29.266 18.573 9.237 1 12.06 ? CN PGM 103 A 1 
HETATM 31 C CO PGM . . . D 3 27.848 18.206 8.777 1 12.61 ? CO PGM 103 A 1 
HETATM 32 C CP PGM . . . D 3 26.999 17.538 9.844 1 16.14 ? CP PGM 103 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           32 
#