data_1TUM
#
_model_server_result.job_id            8oKigTEtU5KgSQKNtLLByQ 
_model_server_result.datetime_utc      '2024-12-21 16:40:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tum 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":130}' 
#
_entry.id    1TUM 
#
_exptl.entry_id    1TUM 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1TUM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TUM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 38 A GLY 38 1_555 B MG MG . A MG 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc2 A OE2 GLU 56 A GLU 56 1_555 B MG MG . A MG 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc3 A OE2 GLU 57 A GLU 57 1_555 B MG MG . A MG 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 A OE1 GLU 98 A GLU 98 1_555 B MG MG . A MG 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc5 C O1G APC . A APC 130 1_555 D CO CON . A CON 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc6 C O1B APC . A APC 130 1_555 D CO CON . A CON 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc7 B MG MG . A MG 132 1_555 E O HOH . A HOH 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc8 B MG MG . A MG 132 1_555 E O HOH . A HOH 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                APC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G APC doub 13 n n 
PG O2G APC sing 14 n n 
PG O3G APC sing 15 n n 
PG O3B APC sing 16 n n 
O2G HOG2 APC sing 17 n n 
O3G HOG3 APC sing 18 n n 
PB O1B APC doub 19 n n 
PB O2B APC sing 20 n n 
PB O3B APC sing 21 n n 
PB C3A APC sing 22 n n 
O2B HOB2 APC sing 23 n n 
PA O1A APC doub 24 n n 
PA O2A APC sing 25 n n 
PA C3A APC sing 26 n n 
PA O5' APC sing 27 n n 
O2A HOA2 APC sing 28 n n 
C3A H3A1 APC sing 29 n n 
C3A H3A2 APC sing 30 n n 
O5' C5' APC sing 31 n n 
C5' C4' APC sing 32 n n 
C5' "H5'1" APC sing 33 n n 
C5' "H5'2" APC sing 34 n n 
C4' O4' APC sing 35 n n 
C4' C3' APC sing 36 n n 
C4' H4' APC sing 37 n n 
O4' C1' APC sing 38 n n 
C3' O3' APC sing 39 n n 
C3' C2' APC sing 40 n n 
C3' H3' APC sing 41 n n 
O3' HO3' APC sing 42 n n 
C2' O2' APC sing 43 n n 
C2' C1' APC sing 44 n n 
C2' H2' APC sing 45 n n 
O2' HO2' APC sing 46 n n 
C1' N9 APC sing 47 n n 
C1' H1' APC sing 48 n n 
N9 C8 APC sing 49 n y 
N9 C4 APC sing 50 n y 
C8 N7 APC doub 51 n y 
C8 H8 APC sing 52 n n 
N7 C5 APC sing 53 n y 
C5 C6 APC sing 54 n y 
C5 C4 APC doub 55 n y 
C6 N6 APC sing 56 n n 
C6 N1 APC doub 57 n y 
N6 HN61 APC sing 58 n n 
N6 HN62 APC sing 59 n n 
N1 C2 APC sing 60 n y 
C2 N3 APC doub 61 n y 
C2 H2 APC sing 62 n n 
N3 C4 APC sing 63 n y 
#
_atom_sites.entry_id                     1TUM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 132 132 MG MO2 . 
C 3 APC A 1 130 130 APC APC . 
D 4 CON A 1 131 131 CON CON . 
E 5 HOH A 1 133 132 HOH MO2 . 
E 5 HOH A 2 134 132 HOH MO2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG APC . . . C 3 7.768 -0.402 8.551 1 0 ? PG APC 130 A 1 
HETATM 2 O O1G APC . . . C 3 7.66 -0.011 10.107 1 0 ? O1G APC 130 A 1 
HETATM 3 O O2G APC . . . C 3 7.42 -1.823 8.337 1 0 ? O2G APC 130 A 1 
HETATM 4 O O3G APC . . . C 3 6.819 0.537 7.65 1 0 ? O3G APC 130 A 1 
HETATM 5 P PB APC . . . C 3 10.443 0.812 8.526 1 0 ? PB APC 130 A 1 
HETATM 6 O O1B APC . . . C 3 10.493 0.775 10.136 1 0 ? O1B APC 130 A 1 
HETATM 7 O O2B APC . . . C 3 11.719 0.291 7.985 1 0 ? O2B APC 130 A 1 
HETATM 8 O O3B APC . . . C 3 9.248 -0.122 7.982 1 0 ? O3B APC 130 A 1 
HETATM 9 P PA APC . . . C 3 11.514 2.952 8.221 1 0 ? PA APC 130 A 1 
HETATM 10 O O1A APC . . . C 3 12.422 2.562 7.12 1 0 ? O1A APC 130 A 1 
HETATM 11 O O2A APC . . . C 3 11.981 2.768 9.613 1 0 ? O2A APC 130 A 1 
HETATM 12 C C3A APC . . . C 3 10.24 2.205 8.067 1 0 ? C3A APC 130 A 1 
HETATM 13 O O5' APC . . . C 3 11.217 4.522 8.037 1 0 ? O5' APC 130 A 1 
HETATM 14 C C5' APC . . . C 3 10.088 4.968 7.287 1 0 ? C5' APC 130 A 1 
HETATM 15 C C4' APC . . . C 3 9.169 5.837 8.141 1 0 ? C4' APC 130 A 1 
HETATM 16 O O4' APC . . . C 3 8.566 6.898 7.374 1 0 ? O4' APC 130 A 1 
HETATM 17 C C3' APC . . . C 3 8.049 5.005 8.722 1 0 ? C3' APC 130 A 1 
HETATM 18 O O3' APC . . . C 3 8.311 4.663 10.086 1 0 ? O3' APC 130 A 1 
HETATM 19 C C2' APC . . . C 3 6.803 5.84 8.597 1 0 ? C2' APC 130 A 1 
HETATM 20 O O2' APC . . . C 3 6.341 6.27 9.878 1 0 ? O2' APC 130 A 1 
HETATM 21 C C1' APC . . . C 3 7.172 7.028 7.726 1 0 ? C1' APC 130 A 1 
HETATM 22 N N9 APC . . . C 3 6.31 7.044 6.533 1 0 ? N9 APC 130 A 1 
HETATM 23 C C8 APC . . . C 3 6.104 6.075 5.608 1 0 ? C8 APC 130 A 1 
HETATM 24 N N7 APC . . . C 3 5.211 6.302 4.703 1 0 ? N7 APC 130 A 1 
HETATM 25 C C5 APC . . . C 3 4.766 7.578 5.05 1 0 ? C5 APC 130 A 1 
HETATM 26 C C6 APC . . . C 3 3.807 8.432 4.493 1 0 ? C6 APC 130 A 1 
HETATM 27 N N6 APC . . . C 3 3.087 8.12 3.416 1 0 ? N6 APC 130 A 1 
HETATM 28 N N1 APC . . . C 3 3.627 9.625 5.081 1 0 ? N1 APC 130 A 1 
HETATM 29 C C2 APC . . . C 3 4.342 9.965 6.153 1 0 ? C2 APC 130 A 1 
HETATM 30 N N3 APC . . . C 3 5.267 9.233 6.768 1 0 ? N3 APC 130 A 1 
HETATM 31 C C4 APC . . . C 3 5.434 8.041 6.16 1 0 ? C4 APC 130 A 1 
HETATM 32 H HOG3 APC . . . C 3 6.162 -0.03 7.239 1 0 ? HOG3 APC 130 A 1 
HETATM 33 H H3A1 APC . . . C 3 9.931 2.203 7.02 1 0 ? H3A1 APC 130 A 1 
HETATM 34 H H3A2 APC . . . C 3 9.465 2.68 8.67 1 0 ? H3A2 APC 130 A 1 
HETATM 35 H "H5'1" APC . . . C 3 9.531 4.101 6.931 1 0 ? "H5'1" APC 130 A 1 
HETATM 36 H "H5'2" APC . . . C 3 10.438 5.54 6.433 1 0 ? "H5'2" APC 130 A 1 
HETATM 37 H H4' APC . . . C 3 9.749 6.271 8.953 1 0 ? H4' APC 130 A 1 
HETATM 38 H H3' APC . . . C 3 7.937 4.101 8.121 1 0 ? H3' APC 130 A 1 
HETATM 39 H HO3' APC . . . C 3 8.112 5.383 10.689 1 0 ? HO3' APC 130 A 1 
HETATM 40 H H2' APC . . . C 3 6.024 5.256 8.101 1 0 ? H2' APC 130 A 1 
HETATM 41 H HO2' APC . . . C 3 5.39 6.146 9.889 1 0 ? HO2' APC 130 A 1 
HETATM 42 H H1' APC . . . C 3 7.023 7.95 8.288 1 0 ? H1' APC 130 A 1 
HETATM 43 H H8 APC . . . C 3 6.685 5.144 5.616 1 0 ? H8 APC 130 A 1 
HETATM 44 H HN61 APC . . . C 3 3.219 7.229 2.96 1 0 ? HN61 APC 130 A 1 
HETATM 45 H HN62 APC . . . C 3 2.408 8.776 3.057 1 0 ? HN62 APC 130 A 1 
HETATM 46 H H2 APC . . . C 3 4.164 10.96 6.553 1 0 ? H2 APC 130 A 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           5372 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           46 
#