data_1TUU # _model_server_result.job_id rnK1329h4XOPJ8_-bUe2oQ _model_server_result.datetime_utc '2024-12-01 01:33:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tuu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2853}' # _entry.id 1TUU # _exptl.entry_id 1TUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.31 _cell.angle_gamma 90 _cell.entry_id 1TUU _cell.length_a 179.083 _cell.length_b 66.111 _cell.length_c 81.666 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 57 n n P O2P AMP sing 58 n n P O3P AMP sing 59 n n P O5' AMP sing 60 n n O2P HOP2 AMP sing 61 n n O3P HOP3 AMP sing 62 n n O5' C5' AMP sing 63 n n C5' C4' AMP sing 64 n n C5' "H5'1" AMP sing 65 n n C5' "H5'2" AMP sing 66 n n C4' O4' AMP sing 67 n n C4' C3' AMP sing 68 n n C4' H4' AMP sing 69 n n O4' C1' AMP sing 70 n n C3' O3' AMP sing 71 n n C3' C2' AMP sing 72 n n C3' H3' AMP sing 73 n n O3' HO3' AMP sing 74 n n C2' O2' AMP sing 75 n n C2' C1' AMP sing 76 n n C2' H2' AMP sing 77 n n O2' HO2' AMP sing 78 n n C1' N9 AMP sing 79 n n C1' H1' AMP sing 80 n n N9 C8 AMP sing 81 n y N9 C4 AMP sing 82 n y C8 N7 AMP doub 83 n y C8 H8 AMP sing 84 n n N7 C5 AMP sing 85 n y C5 C6 AMP sing 86 n y C5 C4 AMP doub 87 n y C6 N6 AMP sing 88 n n C6 N1 AMP doub 89 n y N6 HN61 AMP sing 90 n n N6 HN62 AMP sing 91 n n N1 C2 AMP sing 92 n y C2 N3 AMP doub 93 n y C2 H2 AMP sing 94 n n N3 C4 AMP sing 95 n y # _atom_sites.entry_id 1TUU _atom_sites.fract_transf_matrix[1][1] 0.005584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 400 201 SO4 SO4 . D 3 ADP A 1 401 202 ADP ADP . E 4 NH4 B 1 2852 2852 NH4 NH4 . F 5 AMP B 1 2853 302 AMP AMP . G 6 PIS B 1 2854 301 PIS PIS . H 7 HOH A 1 402 1 HOH WAT . H 7 HOH A 2 403 2 HOH WAT . H 7 HOH A 3 404 3 HOH WAT . H 7 HOH A 4 405 4 HOH WAT . H 7 HOH A 5 406 7 HOH WAT . H 7 HOH A 6 407 8 HOH WAT . H 7 HOH A 7 408 9 HOH WAT . H 7 HOH A 8 409 10 HOH WAT . H 7 HOH A 9 410 12 HOH WAT . H 7 HOH A 10 411 16 HOH WAT . H 7 HOH A 11 412 17 HOH WAT . H 7 HOH A 12 413 18 HOH WAT . H 7 HOH A 13 414 19 HOH WAT . H 7 HOH A 14 415 20 HOH WAT . H 7 HOH A 15 416 22 HOH WAT . H 7 HOH A 16 417 24 HOH WAT . H 7 HOH A 17 418 26 HOH WAT . H 7 HOH A 18 419 27 HOH WAT . H 7 HOH A 19 420 28 HOH WAT . H 7 HOH A 20 421 31 HOH WAT . H 7 HOH A 21 422 32 HOH WAT . H 7 HOH A 22 423 35 HOH WAT . H 7 HOH A 23 424 36 HOH WAT . H 7 HOH A 24 425 37 HOH WAT . H 7 HOH A 25 426 39 HOH WAT . H 7 HOH A 26 427 40 HOH WAT . H 7 HOH A 27 428 41 HOH WAT . H 7 HOH A 28 429 43 HOH WAT . H 7 HOH A 29 430 45 HOH WAT . H 7 HOH A 30 431 48 HOH WAT . H 7 HOH A 31 432 49 HOH WAT . H 7 HOH A 32 433 51 HOH WAT . H 7 HOH A 33 434 52 HOH WAT . H 7 HOH A 34 435 53 HOH WAT . H 7 HOH A 35 436 56 HOH WAT . I 7 HOH B 1 2855 5 HOH WAT . I 7 HOH B 2 2856 6 HOH WAT . I 7 HOH B 3 2857 11 HOH WAT . I 7 HOH B 4 2858 13 HOH WAT . I 7 HOH B 5 2859 14 HOH WAT . I 7 HOH B 6 2860 15 HOH WAT . I 7 HOH B 7 2861 21 HOH WAT . I 7 HOH B 8 2862 23 HOH WAT . I 7 HOH B 9 2863 25 HOH WAT . I 7 HOH B 10 2864 29 HOH WAT . I 7 HOH B 11 2865 30 HOH WAT . I 7 HOH B 12 2866 33 HOH WAT . I 7 HOH B 13 2867 34 HOH WAT . I 7 HOH B 14 2868 38 HOH WAT . I 7 HOH B 15 2869 42 HOH WAT . I 7 HOH B 16 2870 44 HOH WAT . I 7 HOH B 17 2871 46 HOH WAT . I 7 HOH B 18 2872 47 HOH WAT . I 7 HOH B 19 2873 50 HOH WAT . I 7 HOH B 20 2874 54 HOH WAT . I 7 HOH B 21 2875 55 HOH WAT . I 7 HOH B 22 2876 57 HOH WAT . I 7 HOH B 23 2877 58 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 5 76.073 7.196 19.19 1 57.99 ? P AMP 2853 B 1 HETATM 2 O O1P AMP . . . F 5 75.607 8.205 20.151 1 57.02 ? O1P AMP 2853 B 1 HETATM 3 O O2P AMP . . . F 5 77.397 7.514 18.577 1 58.2 ? O2P AMP 2853 B 1 HETATM 4 O O3P AMP . . . F 5 75.022 6.884 18.127 1 56.18 ? O3P AMP 2853 B 1 HETATM 5 O O5' AMP . . . F 5 76.288 5.874 20.101 1 57.3 ? O5' AMP 2853 B 1 HETATM 6 C C5' AMP . . . F 5 76.739 4.688 19.434 1 54.52 ? C5' AMP 2853 B 1 HETATM 7 C C4' AMP . . . F 5 76.174 3.543 20.257 1 53.87 ? C4' AMP 2853 B 1 HETATM 8 O O4' AMP . . . F 5 76.566 2.289 19.6 1 54.74 ? O4' AMP 2853 B 1 HETATM 9 C C3' AMP . . . F 5 76.77 3.522 21.818 1 53.67 ? C3' AMP 2853 B 1 HETATM 10 O O3' AMP . . . F 5 75.587 3.363 22.724 1 56.64 ? O3' AMP 2853 B 1 HETATM 11 C C2' AMP . . . F 5 77.737 2.253 21.764 1 53.5 ? C2' AMP 2853 B 1 HETATM 12 O O2' AMP . . . F 5 77.595 1.398 22.878 1 54.79 ? O2' AMP 2853 B 1 HETATM 13 C C1' AMP . . . F 5 77.304 1.421 20.452 1 53.1 ? C1' AMP 2853 B 1 HETATM 14 N N9 AMP . . . F 5 78.485 0.918 19.727 1 51.59 ? N9 AMP 2853 B 1 HETATM 15 C C8 AMP . . . F 5 79.573 1.64 19.193 1 50.81 ? C8 AMP 2853 B 1 HETATM 16 N N7 AMP . . . F 5 80.531 0.93 18.561 1 50.46 ? N7 AMP 2853 B 1 HETATM 17 C C5 AMP . . . F 5 79.988 -0.357 18.724 1 51.57 ? C5 AMP 2853 B 1 HETATM 18 C C6 AMP . . . F 5 80.444 -1.637 18.269 1 52.22 ? C6 AMP 2853 B 1 HETATM 19 N N6 AMP . . . F 5 81.649 -1.725 17.599 1 52.78 ? N6 AMP 2853 B 1 HETATM 20 N N1 AMP . . . F 5 79.629 -2.737 18.6 1 52.14 ? N1 AMP 2853 B 1 HETATM 21 C C2 AMP . . . F 5 78.454 -2.609 19.258 1 52.38 ? C2 AMP 2853 B 1 HETATM 22 N N3 AMP . . . F 5 77.946 -1.436 19.713 1 51.7 ? N3 AMP 2853 B 1 HETATM 23 C C4 AMP . . . F 5 78.725 -0.367 19.389 1 51.71 ? C4 AMP 2853 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #