data_1TUU # _model_server_result.job_id q92mHpdFvyD3mgfc-XKLug _model_server_result.datetime_utc '2024-12-01 01:45:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tuu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1TUU # _exptl.entry_id 1TUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.31 _cell.angle_gamma 90 _cell.entry_id 1TUU _cell.length_a 179.083 _cell.length_b 66.111 _cell.length_c 81.666 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1TUU _atom_sites.fract_transf_matrix[1][1] 0.005584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015126 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 400 201 SO4 SO4 . D 3 ADP A 1 401 202 ADP ADP . E 4 NH4 B 1 2852 2852 NH4 NH4 . F 5 AMP B 1 2853 302 AMP AMP . G 6 PIS B 1 2854 301 PIS PIS . H 7 HOH A 1 402 1 HOH WAT . H 7 HOH A 2 403 2 HOH WAT . H 7 HOH A 3 404 3 HOH WAT . H 7 HOH A 4 405 4 HOH WAT . H 7 HOH A 5 406 7 HOH WAT . H 7 HOH A 6 407 8 HOH WAT . H 7 HOH A 7 408 9 HOH WAT . H 7 HOH A 8 409 10 HOH WAT . H 7 HOH A 9 410 12 HOH WAT . H 7 HOH A 10 411 16 HOH WAT . H 7 HOH A 11 412 17 HOH WAT . H 7 HOH A 12 413 18 HOH WAT . H 7 HOH A 13 414 19 HOH WAT . H 7 HOH A 14 415 20 HOH WAT . H 7 HOH A 15 416 22 HOH WAT . H 7 HOH A 16 417 24 HOH WAT . H 7 HOH A 17 418 26 HOH WAT . H 7 HOH A 18 419 27 HOH WAT . H 7 HOH A 19 420 28 HOH WAT . H 7 HOH A 20 421 31 HOH WAT . H 7 HOH A 21 422 32 HOH WAT . H 7 HOH A 22 423 35 HOH WAT . H 7 HOH A 23 424 36 HOH WAT . H 7 HOH A 24 425 37 HOH WAT . H 7 HOH A 25 426 39 HOH WAT . H 7 HOH A 26 427 40 HOH WAT . H 7 HOH A 27 428 41 HOH WAT . H 7 HOH A 28 429 43 HOH WAT . H 7 HOH A 29 430 45 HOH WAT . H 7 HOH A 30 431 48 HOH WAT . H 7 HOH A 31 432 49 HOH WAT . H 7 HOH A 32 433 51 HOH WAT . H 7 HOH A 33 434 52 HOH WAT . H 7 HOH A 34 435 53 HOH WAT . H 7 HOH A 35 436 56 HOH WAT . I 7 HOH B 1 2855 5 HOH WAT . I 7 HOH B 2 2856 6 HOH WAT . I 7 HOH B 3 2857 11 HOH WAT . I 7 HOH B 4 2858 13 HOH WAT . I 7 HOH B 5 2859 14 HOH WAT . I 7 HOH B 6 2860 15 HOH WAT . I 7 HOH B 7 2861 21 HOH WAT . I 7 HOH B 8 2862 23 HOH WAT . I 7 HOH B 9 2863 25 HOH WAT . I 7 HOH B 10 2864 29 HOH WAT . I 7 HOH B 11 2865 30 HOH WAT . I 7 HOH B 12 2866 33 HOH WAT . I 7 HOH B 13 2867 34 HOH WAT . I 7 HOH B 14 2868 38 HOH WAT . I 7 HOH B 15 2869 42 HOH WAT . I 7 HOH B 16 2870 44 HOH WAT . I 7 HOH B 17 2871 46 HOH WAT . I 7 HOH B 18 2872 47 HOH WAT . I 7 HOH B 19 2873 50 HOH WAT . I 7 HOH B 20 2874 54 HOH WAT . I 7 HOH B 21 2875 55 HOH WAT . I 7 HOH B 22 2876 57 HOH WAT . I 7 HOH B 23 2877 58 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 3 29.886 -8.084 16.492 1 51.55 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . D 3 28.885 -7.03 16.094 1 49.3 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . D 3 29.428 -9.051 17.555 1 51.86 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . D 3 30.437 -8.83 15.227 1 50.33 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . D 3 32.611 -6.933 16.42 1 42.08 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . D 3 33.233 -8.111 15.736 1 39.83 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . D 3 33.382 -6.267 17.455 1 44.08 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . D 3 31.171 -7.367 17.058 1 46.67 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . D 3 32.127 -5.953 15.271 1 43.75 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . D 3 31.432 -4.724 15.604 1 47.15 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . D 3 31.803 -3.53 14.735 1 50.42 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . D 3 32.28 -4.016 13.446 1 49.83 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . D 3 30.704 -2.54 14.293 1 51.86 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . D 3 30.421 -1.665 15.386 1 55.64 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . D 3 31.477 -1.781 13.104 1 51.64 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . D 3 32.445 -0.816 13.652 1 54.65 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . D 3 32.184 -3.008 12.411 1 50.95 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . D 3 31.34 -3.507 11.229 1 49.52 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . D 3 30.643 -4.626 11.144 1 50.84 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . D 3 30.027 -4.733 10.009 1 49.54 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . D 3 30.376 -3.589 9.296 1 48.87 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . D 3 30.06 -3.057 7.981 1 49.04 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . D 3 29.251 -3.714 7.071 1 49.42 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . D 3 30.607 -1.872 7.622 1 47.65 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . D 3 31.39 -1.22 8.477 1 45.73 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . D 3 31.73 -1.616 9.714 1 46.6 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . D 3 31.195 -2.826 10.058 1 48.59 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #