data_1TUY # _model_server_result.job_id wc00UueBsrH2IZNJK7FSzg _model_server_result.datetime_utc '2024-11-28 04:43:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1TUY # _exptl.entry_id 1TUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.13 _cell.angle_gamma 90 _cell.entry_id 1TUY _cell.length_a 180.043 _cell.length_b 67.196 _cell.length_c 82.142 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 8 n n PB O2B ADP sing 9 n n PB O3B ADP sing 10 n n PB O3A ADP sing 11 n n O2B HOB2 ADP sing 12 n n O3B HOB3 ADP sing 13 n n PA O1A ADP doub 14 n n PA O2A ADP sing 15 n n PA O3A ADP sing 16 n n PA O5' ADP sing 17 n n O2A HOA2 ADP sing 18 n n O5' C5' ADP sing 19 n n C5' C4' ADP sing 20 n n C5' "H5'1" ADP sing 21 n n C5' "H5'2" ADP sing 22 n n C4' O4' ADP sing 23 n n C4' C3' ADP sing 24 n n C4' H4' ADP sing 25 n n O4' C1' ADP sing 26 n n C3' O3' ADP sing 27 n n C3' C2' ADP sing 28 n n C3' H3' ADP sing 29 n n O3' HO3' ADP sing 30 n n C2' O2' ADP sing 31 n n C2' C1' ADP sing 32 n n C2' H2' ADP sing 33 n n O2' HO2' ADP sing 34 n n C1' N9 ADP sing 35 n n C1' H1' ADP sing 36 n n N9 C8 ADP sing 37 n y N9 C4 ADP sing 38 n y C8 N7 ADP doub 39 n y C8 H8 ADP sing 40 n n N7 C5 ADP sing 41 n y C5 C6 ADP sing 42 n y C5 C4 ADP doub 43 n y C6 N6 ADP sing 44 n n C6 N1 ADP doub 45 n y N6 HN61 ADP sing 46 n n N6 HN62 ADP sing 47 n n N1 C2 ADP sing 48 n y C2 N3 ADP doub 49 n y C2 H2 ADP sing 50 n n N3 C4 ADP sing 51 n y # _atom_sites.entry_id 1TUY _atom_sites.fract_transf_matrix[1][1] 0.005554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001296 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 400 201 SO4 SO4 . D 3 ADP A 1 401 202 ADP ADP . E 3 ADP B 1 400 302 ADP ADP . F 4 AF3 B 1 448 448 AF3 AF3 . G 5 ACY B 1 425 425 ACY ACY . H 6 HOH A 1 402 46 HOH WAT . H 6 HOH A 2 403 47 HOH WAT . H 6 HOH A 3 404 49 HOH WAT . H 6 HOH A 4 405 1 HOH WAT . H 6 HOH A 5 406 5 HOH WAT . H 6 HOH A 6 407 7 HOH WAT . H 6 HOH A 7 408 8 HOH WAT . H 6 HOH A 8 409 10 HOH WAT . H 6 HOH A 9 410 11 HOH WAT . H 6 HOH A 10 411 12 HOH WAT . H 6 HOH A 11 412 13 HOH WAT . H 6 HOH A 12 413 14 HOH WAT . H 6 HOH A 13 414 16 HOH WAT . H 6 HOH A 14 415 21 HOH WAT . H 6 HOH A 15 416 25 HOH WAT . H 6 HOH A 16 417 27 HOH WAT . H 6 HOH A 17 418 29 HOH WAT . H 6 HOH A 18 419 30 HOH WAT . H 6 HOH A 19 420 32 HOH WAT . H 6 HOH A 20 421 34 HOH WAT . H 6 HOH A 21 422 35 HOH WAT . H 6 HOH A 22 423 36 HOH WAT . H 6 HOH A 23 424 38 HOH WAT . H 6 HOH A 24 425 39 HOH WAT . H 6 HOH A 25 426 40 HOH WAT . H 6 HOH A 26 427 41 HOH WAT . H 6 HOH A 27 428 42 HOH WAT . H 6 HOH A 28 429 44 HOH WAT . I 6 HOH B 1 449 48 HOH WAT . I 6 HOH B 2 450 2 HOH WAT . I 6 HOH B 3 451 3 HOH WAT . I 6 HOH B 4 452 4 HOH WAT . I 6 HOH B 5 453 6 HOH WAT . I 6 HOH B 6 454 9 HOH WAT . I 6 HOH B 7 455 15 HOH WAT . I 6 HOH B 8 456 17 HOH WAT . I 6 HOH B 9 457 18 HOH WAT . I 6 HOH B 10 458 19 HOH WAT . I 6 HOH B 11 459 20 HOH WAT . I 6 HOH B 12 460 22 HOH WAT . I 6 HOH B 13 461 23 HOH WAT . I 6 HOH B 14 462 24 HOH WAT . I 6 HOH B 15 463 26 HOH WAT . I 6 HOH B 16 464 28 HOH WAT . I 6 HOH B 17 465 31 HOH WAT . I 6 HOH B 18 466 33 HOH WAT . I 6 HOH B 19 467 37 HOH WAT . I 6 HOH B 20 468 43 HOH WAT . I 6 HOH B 21 469 45 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 3 29.947 -7.629 16.814 1 44.3 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . D 3 28.707 -6.767 17.038 1 44.03 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . D 3 29.973 -8.903 17.611 1 45.08 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . D 3 30.168 -7.878 15.286 1 43.63 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . D 3 32.643 -6.368 16.498 1 38.31 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . D 3 33.263 -7.635 15.959 1 37.5 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . D 3 33.449 -5.565 17.41 1 39.81 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . D 3 31.237 -6.789 17.23 1 42.11 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . D 3 32.138 -5.487 15.233 1 40.41 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . D 3 31.478 -4.171 15.425 1 38.91 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . D 3 32.037 -3.107 14.481 1 37.76 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . D 3 32.276 -3.756 13.184 1 38.39 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . D 3 31.13 -1.955 14.033 1 37.83 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . D 3 31.139 -0.894 14.994 1 39.06 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . D 3 31.935 -1.427 12.805 1 38.54 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . D 3 31.068 -0.642 11.933 1 39.21 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . D 3 32.294 -2.802 12.105 1 39.35 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . D 3 31.311 -3.272 10.977 1 38.81 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . D 3 30.464 -4.302 11.019 1 38.23 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . D 3 29.762 -4.428 9.949 1 38.54 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . D 3 30.182 -3.376 9.114 1 39.33 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . D 3 29.827 -2.92 7.759 1 39.74 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . D 3 28.884 -3.531 6.965 1 40.02 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . D 3 30.471 -1.824 7.268 1 39.03 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . D 3 31.395 -1.2 8.018 1 38.96 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . D 3 31.784 -1.558 9.268 1 37.98 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . D 3 31.131 -2.647 9.757 1 38.86 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #