data_1TUY
#
_model_server_result.job_id            zHlJBO2zuMHwjBxrZJyrqA 
_model_server_result.datetime_utc      '2024-11-14 21:02:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tuy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    1TUY 
#
_exptl.entry_id    1TUY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.13 
_cell.angle_gamma         90 
_cell.entry_id            1TUY 
_cell.length_a            180.043 
_cell.length_b            67.196 
_cell.length_c            82.142 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TUY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 8 n n 
PB O2B ADP sing 9 n n 
PB O3B ADP sing 10 n n 
PB O3A ADP sing 11 n n 
O2B HOB2 ADP sing 12 n n 
O3B HOB3 ADP sing 13 n n 
PA O1A ADP doub 14 n n 
PA O2A ADP sing 15 n n 
PA O3A ADP sing 16 n n 
PA O5' ADP sing 17 n n 
O2A HOA2 ADP sing 18 n n 
O5' C5' ADP sing 19 n n 
C5' C4' ADP sing 20 n n 
C5' "H5'1" ADP sing 21 n n 
C5' "H5'2" ADP sing 22 n n 
C4' O4' ADP sing 23 n n 
C4' C3' ADP sing 24 n n 
C4' H4' ADP sing 25 n n 
O4' C1' ADP sing 26 n n 
C3' O3' ADP sing 27 n n 
C3' C2' ADP sing 28 n n 
C3' H3' ADP sing 29 n n 
O3' HO3' ADP sing 30 n n 
C2' O2' ADP sing 31 n n 
C2' C1' ADP sing 32 n n 
C2' H2' ADP sing 33 n n 
O2' HO2' ADP sing 34 n n 
C1' N9 ADP sing 35 n n 
C1' H1' ADP sing 36 n n 
N9 C8 ADP sing 37 n y 
N9 C4 ADP sing 38 n y 
C8 N7 ADP doub 39 n y 
C8 H8 ADP sing 40 n n 
N7 C5 ADP sing 41 n y 
C5 C6 ADP sing 42 n y 
C5 C4 ADP doub 43 n y 
C6 N6 ADP sing 44 n n 
C6 N1 ADP doub 45 n y 
N6 HN61 ADP sing 46 n n 
N6 HN62 ADP sing 47 n n 
N1 C2 ADP sing 48 n y 
C2 N3 ADP doub 49 n y 
C2 H2 ADP sing 50 n n 
N3 C4 ADP sing 51 n y 
#
_atom_sites.entry_id                     1TUY 
_atom_sites.fract_transf_matrix[1][1]    0.005554 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001296 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014882 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012501 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 400 201 SO4 SO4 . 
D 3 ADP A 1 401 202 ADP ADP . 
E 3 ADP B 1 400 302 ADP ADP . 
F 4 AF3 B 1 448 448 AF3 AF3 . 
G 5 ACY B 1 425 425 ACY ACY . 
H 6 HOH A 1 402 46 HOH WAT . 
H 6 HOH A 2 403 47 HOH WAT . 
H 6 HOH A 3 404 49 HOH WAT . 
H 6 HOH A 4 405 1 HOH WAT . 
H 6 HOH A 5 406 5 HOH WAT . 
H 6 HOH A 6 407 7 HOH WAT . 
H 6 HOH A 7 408 8 HOH WAT . 
H 6 HOH A 8 409 10 HOH WAT . 
H 6 HOH A 9 410 11 HOH WAT . 
H 6 HOH A 10 411 12 HOH WAT . 
H 6 HOH A 11 412 13 HOH WAT . 
H 6 HOH A 12 413 14 HOH WAT . 
H 6 HOH A 13 414 16 HOH WAT . 
H 6 HOH A 14 415 21 HOH WAT . 
H 6 HOH A 15 416 25 HOH WAT . 
H 6 HOH A 16 417 27 HOH WAT . 
H 6 HOH A 17 418 29 HOH WAT . 
H 6 HOH A 18 419 30 HOH WAT . 
H 6 HOH A 19 420 32 HOH WAT . 
H 6 HOH A 20 421 34 HOH WAT . 
H 6 HOH A 21 422 35 HOH WAT . 
H 6 HOH A 22 423 36 HOH WAT . 
H 6 HOH A 23 424 38 HOH WAT . 
H 6 HOH A 24 425 39 HOH WAT . 
H 6 HOH A 25 426 40 HOH WAT . 
H 6 HOH A 26 427 41 HOH WAT . 
H 6 HOH A 27 428 42 HOH WAT . 
H 6 HOH A 28 429 44 HOH WAT . 
I 6 HOH B 1 449 48 HOH WAT . 
I 6 HOH B 2 450 2 HOH WAT . 
I 6 HOH B 3 451 3 HOH WAT . 
I 6 HOH B 4 452 4 HOH WAT . 
I 6 HOH B 5 453 6 HOH WAT . 
I 6 HOH B 6 454 9 HOH WAT . 
I 6 HOH B 7 455 15 HOH WAT . 
I 6 HOH B 8 456 17 HOH WAT . 
I 6 HOH B 9 457 18 HOH WAT . 
I 6 HOH B 10 458 19 HOH WAT . 
I 6 HOH B 11 459 20 HOH WAT . 
I 6 HOH B 12 460 22 HOH WAT . 
I 6 HOH B 13 461 23 HOH WAT . 
I 6 HOH B 14 462 24 HOH WAT . 
I 6 HOH B 15 463 26 HOH WAT . 
I 6 HOH B 16 464 28 HOH WAT . 
I 6 HOH B 17 465 31 HOH WAT . 
I 6 HOH B 18 466 33 HOH WAT . 
I 6 HOH B 19 467 37 HOH WAT . 
I 6 HOH B 20 468 43 HOH WAT . 
I 6 HOH B 21 469 45 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 3 29.947 -7.629 16.814 1 44.3 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . D 3 28.707 -6.767 17.038 1 44.03 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . D 3 29.973 -8.903 17.611 1 45.08 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . D 3 30.168 -7.878 15.286 1 43.63 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . D 3 32.643 -6.368 16.498 1 38.31 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . D 3 33.263 -7.635 15.959 1 37.5 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . D 3 33.449 -5.565 17.41 1 39.81 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . D 3 31.237 -6.789 17.23 1 42.11 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . D 3 32.138 -5.487 15.233 1 40.41 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . D 3 31.478 -4.171 15.425 1 38.91 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . D 3 32.037 -3.107 14.481 1 37.76 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . D 3 32.276 -3.756 13.184 1 38.39 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . D 3 31.13 -1.955 14.033 1 37.83 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . D 3 31.139 -0.894 14.994 1 39.06 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . D 3 31.935 -1.427 12.805 1 38.54 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . D 3 31.068 -0.642 11.933 1 39.21 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . D 3 32.294 -2.802 12.105 1 39.35 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . D 3 31.311 -3.272 10.977 1 38.81 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . D 3 30.464 -4.302 11.019 1 38.23 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . D 3 29.762 -4.428 9.949 1 38.54 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . D 3 30.182 -3.376 9.114 1 39.33 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . D 3 29.827 -2.92 7.759 1 39.74 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . D 3 28.884 -3.531 6.965 1 40.02 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . D 3 30.471 -1.824 7.268 1 39.03 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . D 3 31.395 -1.2 8.018 1 38.96 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . D 3 31.784 -1.558 9.268 1 37.98 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . D 3 31.131 -2.647 9.757 1 38.86 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#