data_1TV5 # _model_server_result.job_id OcpnppUuWTP2vOIFGCsWwg _model_server_result.datetime_utc '2024-11-13 12:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1TV5 # _exptl.entry_id 1TV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2Z)-2-cyano-3-hydroxy-N-[4-(trifluoromethyl)phenyl]but-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TV5 _cell.length_a 105.428 _cell.length_b 105.428 _cell.length_c 276.632 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TV5 _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 105.428 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 52.714 91.303326 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 49 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 175 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 58 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 184 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.34 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H9 F3 N2 O2' _chem_comp.formula_weight 270.207 _chem_comp.id A26 _chem_comp.mon_nstd_flag . _chem_comp.name (2Z)-2-cyano-3-hydroxy-N-[4-(trifluoromethyl)phenyl]but-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ANTIPROLIFERATIVE AGENT A771726' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A26 doub 1 n y C1 C6 A26 sing 2 n y C1 H11 A26 sing 3 n n C2 C3 A26 sing 4 n y C2 H21 A26 sing 5 n n C3 C4 A26 doub 6 n y C3 C11 A26 sing 7 n n C4 C5 A26 sing 8 n y C4 H41 A26 sing 9 n n C5 C6 A26 doub 10 n y C5 H51 A26 sing 11 n n C6 N15 A26 sing 12 n n C11 F12 A26 sing 13 n n C11 F13 A26 sing 14 n n C11 F14 A26 sing 15 n n N15 C16 A26 sing 16 n n N15 HN11 A26 sing 17 n n C16 C17 A26 sing 18 n n C16 O25 A26 doub 19 n n C17 C18 A26 sing 20 n n C17 C19 A26 doub 21 z n C18 N26 A26 trip 22 n n C19 O20 A26 sing 23 n n C19 C21 A26 sing 24 n n O20 HO20 A26 sing 25 n n C21 H211 A26 sing 26 n n C21 H212 A26 sing 27 n n C21 H213 A26 sing 28 n n # _atom_sites.entry_id 1TV5 _atom_sites.fract_transf_matrix[1][1] 0.009485 _atom_sites.fract_transf_matrix[1][2] 0.005476 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1006 1006 SO4 SO4 . C 3 A26 A 1 1001 1001 A26 A26 . D 4 FMN A 1 1002 1002 FMN FMN . E 5 ORO A 1 1003 1003 ORO ORO . F 6 N8E A 1 1004 1004 N8E N8E . G 6 N8E A 1 1005 1005 N8E N8E . H 7 HOH A 1 1007 100 HOH HOH . H 7 HOH A 2 1008 101 HOH HOH . H 7 HOH A 3 1009 102 HOH HOH . H 7 HOH A 4 1010 103 HOH HOH . H 7 HOH A 5 1011 104 HOH HOH . H 7 HOH A 6 1012 105 HOH HOH . H 7 HOH A 7 1013 106 HOH HOH . H 7 HOH A 8 1014 107 HOH HOH . H 7 HOH A 9 1015 108 HOH HOH . H 7 HOH A 10 1016 109 HOH HOH . H 7 HOH A 11 1017 110 HOH HOH . H 7 HOH A 12 1018 111 HOH HOH . H 7 HOH A 13 1019 112 HOH HOH . H 7 HOH A 14 1020 113 HOH HOH . H 7 HOH A 15 1021 114 HOH HOH . H 7 HOH A 16 1022 115 HOH HOH . H 7 HOH A 17 1023 116 HOH HOH . H 7 HOH A 18 1024 117 HOH HOH . H 7 HOH A 19 1025 118 HOH HOH . H 7 HOH A 20 1026 119 HOH HOH . H 7 HOH A 21 1027 120 HOH HOH . H 7 HOH A 22 1028 121 HOH HOH . H 7 HOH A 23 1029 122 HOH HOH . H 7 HOH A 24 1030 123 HOH HOH . H 7 HOH A 25 1031 124 HOH HOH . H 7 HOH A 26 1032 125 HOH HOH . H 7 HOH A 27 1033 127 HOH HOH . H 7 HOH A 28 1034 128 HOH HOH . H 7 HOH A 29 1035 129 HOH HOH . H 7 HOH A 30 1036 131 HOH HOH . H 7 HOH A 31 1037 132 HOH HOH . H 7 HOH A 32 1038 133 HOH HOH . H 7 HOH A 33 1039 134 HOH HOH . H 7 HOH A 34 1040 135 HOH HOH . H 7 HOH A 35 1041 136 HOH HOH . H 7 HOH A 36 1042 137 HOH HOH . H 7 HOH A 37 1043 138 HOH HOH . H 7 HOH A 38 1044 139 HOH HOH . H 7 HOH A 39 1045 140 HOH HOH . H 7 HOH A 40 1046 141 HOH HOH . H 7 HOH A 41 1047 142 HOH HOH . H 7 HOH A 42 1048 143 HOH HOH . H 7 HOH A 43 1049 144 HOH HOH . H 7 HOH A 44 1050 145 HOH HOH . H 7 HOH A 45 1051 146 HOH HOH . H 7 HOH A 46 1052 147 HOH HOH . H 7 HOH A 47 1053 148 HOH HOH . H 7 HOH A 48 1054 149 HOH HOH . H 7 HOH A 49 1055 150 HOH HOH . H 7 HOH A 50 1056 151 HOH HOH . H 7 HOH A 51 1057 152 HOH HOH . H 7 HOH A 52 1058 153 HOH HOH . H 7 HOH A 53 1059 154 HOH HOH . H 7 HOH A 54 1060 155 HOH HOH . H 7 HOH A 55 1061 156 HOH HOH . H 7 HOH A 56 1062 157 HOH HOH . H 7 HOH A 57 1063 158 HOH HOH . H 7 HOH A 58 1064 159 HOH HOH . H 7 HOH A 59 1065 160 HOH HOH . H 7 HOH A 60 1066 161 HOH HOH . H 7 HOH A 61 1067 162 HOH HOH . H 7 HOH A 62 1068 163 HOH HOH . H 7 HOH A 63 1069 164 HOH HOH . H 7 HOH A 64 1070 165 HOH HOH . H 7 HOH A 65 1071 166 HOH HOH . H 7 HOH A 66 1072 167 HOH HOH . H 7 HOH A 67 1073 168 HOH HOH . H 7 HOH A 68 1074 169 HOH HOH . H 7 HOH A 69 1075 170 HOH HOH . H 7 HOH A 70 1076 171 HOH HOH . H 7 HOH A 71 1077 172 HOH HOH . H 7 HOH A 72 1078 173 HOH HOH . H 7 HOH A 73 1079 174 HOH HOH . H 7 HOH A 74 1080 175 HOH HOH . H 7 HOH A 75 1081 176 HOH HOH . H 7 HOH A 76 1082 178 HOH HOH . H 7 HOH A 77 1083 179 HOH HOH . H 7 HOH A 78 1084 180 HOH HOH . H 7 HOH A 79 1085 181 HOH HOH . H 7 HOH A 80 1086 182 HOH HOH . H 7 HOH A 81 1087 183 HOH HOH . H 7 HOH A 82 1088 184 HOH HOH . H 7 HOH A 83 1089 185 HOH HOH . H 7 HOH A 84 1090 186 HOH HOH . H 7 HOH A 85 1091 187 HOH HOH . H 7 HOH A 86 1092 188 HOH HOH . H 7 HOH A 87 1093 189 HOH HOH . H 7 HOH A 88 1094 190 HOH HOH . H 7 HOH A 89 1095 191 HOH HOH . H 7 HOH A 90 1096 192 HOH HOH . H 7 HOH A 91 1097 193 HOH HOH . H 7 HOH A 92 1098 194 HOH HOH . H 7 HOH A 93 1099 195 HOH HOH . H 7 HOH A 94 1100 196 HOH HOH . H 7 HOH A 95 1101 197 HOH HOH . H 7 HOH A 96 1102 198 HOH HOH . H 7 HOH A 97 1103 199 HOH HOH . H 7 HOH A 98 1104 200 HOH HOH . H 7 HOH A 99 1105 201 HOH HOH . H 7 HOH A 100 1106 202 HOH HOH . H 7 HOH A 101 1107 203 HOH HOH . H 7 HOH A 102 1108 204 HOH HOH . H 7 HOH A 103 1109 205 HOH HOH . H 7 HOH A 104 1110 206 HOH HOH . H 7 HOH A 105 1111 207 HOH HOH . H 7 HOH A 106 1112 208 HOH HOH . H 7 HOH A 107 1113 209 HOH HOH . H 7 HOH A 108 1114 210 HOH HOH . H 7 HOH A 109 1115 211 HOH HOH . H 7 HOH A 110 1116 212 HOH HOH . H 7 HOH A 111 1117 213 HOH HOH . H 7 HOH A 112 1118 214 HOH HOH . H 7 HOH A 113 1119 215 HOH HOH . H 7 HOH A 114 1120 216 HOH HOH . H 7 HOH A 115 1121 217 HOH HOH . H 7 HOH A 116 1122 218 HOH HOH . H 7 HOH A 117 1123 219 HOH HOH . H 7 HOH A 118 1124 220 HOH HOH . H 7 HOH A 119 1125 221 HOH HOH . H 7 HOH A 120 1126 222 HOH HOH . H 7 HOH A 121 1127 223 HOH HOH . H 7 HOH A 122 1128 224 HOH HOH . H 7 HOH A 123 1129 225 HOH HOH . H 7 HOH A 124 1130 226 HOH HOH . H 7 HOH A 125 1131 227 HOH HOH . H 7 HOH A 126 1132 228 HOH HOH . H 7 HOH A 127 1133 229 HOH HOH . H 7 HOH A 128 1134 230 HOH HOH . H 7 HOH A 129 1135 231 HOH HOH . H 7 HOH A 130 1136 232 HOH HOH . H 7 HOH A 131 1137 233 HOH HOH . H 7 HOH A 132 1138 234 HOH HOH . H 7 HOH A 133 1139 235 HOH HOH . H 7 HOH A 134 1140 236 HOH HOH . H 7 HOH A 135 1141 237 HOH HOH . H 7 HOH A 136 1142 238 HOH HOH . H 7 HOH A 137 1143 240 HOH HOH . H 7 HOH A 138 1144 241 HOH HOH . H 7 HOH A 139 1145 242 HOH HOH . H 7 HOH A 140 1146 243 HOH HOH . H 7 HOH A 141 1147 244 HOH HOH . H 7 HOH A 142 1148 245 HOH HOH . H 7 HOH A 143 1149 300 HOH HOH . H 7 HOH A 144 1150 301 HOH HOH . H 7 HOH A 145 1151 302 HOH HOH . H 7 HOH A 146 1152 303 HOH HOH . H 7 HOH A 147 1153 304 HOH HOH . H 7 HOH A 148 1154 305 HOH HOH . H 7 HOH A 149 1155 306 HOH HOH . H 7 HOH A 150 1156 307 HOH HOH . H 7 HOH A 151 1157 308 HOH HOH . H 7 HOH A 152 1158 309 HOH HOH . H 7 HOH A 153 1159 310 HOH HOH . H 7 HOH A 154 1160 311 HOH HOH . H 7 HOH A 155 1161 312 HOH HOH . H 7 HOH A 156 1162 313 HOH HOH . H 7 HOH A 157 1163 314 HOH HOH . H 7 HOH A 158 1164 315 HOH HOH . H 7 HOH A 159 1165 316 HOH HOH . H 7 HOH A 160 1166 317 HOH HOH . H 7 HOH A 161 1167 318 HOH HOH . H 7 HOH A 162 1168 319 HOH HOH . H 7 HOH A 163 1169 320 HOH HOH . H 7 HOH A 164 1170 321 HOH HOH . H 7 HOH A 165 1171 322 HOH HOH . H 7 HOH A 166 1172 323 HOH HOH . H 7 HOH A 167 1173 324 HOH HOH . H 7 HOH A 168 1174 325 HOH HOH . H 7 HOH A 169 1175 326 HOH HOH . H 7 HOH A 170 1176 327 HOH HOH . H 7 HOH A 171 1177 328 HOH HOH . H 7 HOH A 172 1178 329 HOH HOH . H 7 HOH A 173 1179 330 HOH HOH . H 7 HOH A 174 1180 331 HOH HOH . H 7 HOH A 175 1181 332 HOH HOH . H 7 HOH A 176 1182 333 HOH HOH . H 7 HOH A 177 1183 334 HOH HOH . H 7 HOH A 178 1184 335 HOH HOH . H 7 HOH A 179 1185 336 HOH HOH . H 7 HOH A 180 1186 337 HOH HOH . H 7 HOH A 181 1187 338 HOH HOH . H 7 HOH A 182 1188 339 HOH HOH . H 7 HOH A 183 1189 340 HOH HOH . H 7 HOH A 184 1190 341 HOH HOH . H 7 HOH A 185 1191 342 HOH HOH . H 7 HOH A 186 1192 343 HOH HOH . H 7 HOH A 187 1193 344 HOH HOH . H 7 HOH A 188 1194 345 HOH HOH . H 7 HOH A 189 1195 346 HOH HOH . H 7 HOH A 190 1196 347 HOH HOH . H 7 HOH A 191 1197 348 HOH HOH . H 7 HOH A 192 1198 349 HOH HOH . H 7 HOH A 193 1199 350 HOH HOH . H 7 HOH A 194 1200 351 HOH HOH . H 7 HOH A 195 1201 352 HOH HOH . H 7 HOH A 196 1202 353 HOH HOH . H 7 HOH A 197 1203 354 HOH HOH . H 7 HOH A 198 1204 355 HOH HOH . H 7 HOH A 199 1205 356 HOH HOH . H 7 HOH A 200 1206 357 HOH HOH . H 7 HOH A 201 1207 358 HOH HOH . H 7 HOH A 202 1208 359 HOH HOH . H 7 HOH A 203 1209 360 HOH HOH . H 7 HOH A 204 1210 361 HOH HOH . H 7 HOH A 205 1211 362 HOH HOH . H 7 HOH A 206 1212 363 HOH HOH . H 7 HOH A 207 1213 364 HOH HOH . H 7 HOH A 208 1214 365 HOH HOH . H 7 HOH A 209 1215 366 HOH HOH . H 7 HOH A 210 1216 367 HOH HOH . H 7 HOH A 211 1217 368 HOH HOH . H 7 HOH A 212 1218 369 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A26 . . . C 3 38.368 34.453 38.283 1 26.09 ? C1 A26 1001 A 1 HETATM 2 C C2 A26 . . . C 3 38.676 33.159 38.764 1 28.12 ? C2 A26 1001 A 1 HETATM 3 C C3 A26 . . . C 3 38.876 32.084 37.818 1 30.23 ? C3 A26 1001 A 1 HETATM 4 C C4 A26 . . . C 3 38.753 32.357 36.444 1 28.24 ? C4 A26 1001 A 1 HETATM 5 C C5 A26 . . . C 3 38.454 33.612 35.963 1 26.91 ? C5 A26 1001 A 1 HETATM 6 C C6 A26 . . . C 3 38.253 34.706 36.898 1 28.07 ? C6 A26 1001 A 1 HETATM 7 C C11 A26 . . . C 3 39.215 30.662 38.247 1 33.17 ? C11 A26 1001 A 1 HETATM 8 F F12 A26 . . . C 3 38.335 29.907 37.994 1 33.01 ? F12 A26 1001 A 1 HETATM 9 F F13 A26 . . . C 3 39.416 30.689 39.519 1 32.51 ? F13 A26 1001 A 1 HETATM 10 F F14 A26 . . . C 3 40.247 30.481 37.945 1 32.24 ? F14 A26 1001 A 1 HETATM 11 N N15 A26 . . . C 3 37.961 35.999 36.529 1 25.28 ? N15 A26 1001 A 1 HETATM 12 C C16 A26 . . . C 3 37.482 36.498 35.374 1 22.12 ? C16 A26 1001 A 1 HETATM 13 C C17 A26 . . . C 3 37.034 37.95 35.294 1 21.19 ? C17 A26 1001 A 1 HETATM 14 C C18 A26 . . . C 3 36.533 38.355 34.001 1 19.94 ? C18 A26 1001 A 1 HETATM 15 C C19 A26 . . . C 3 37.125 38.766 36.401 1 19.37 ? C19 A26 1001 A 1 HETATM 16 O O20 A26 . . . C 3 37.621 38.308 37.587 1 20.3 ? O20 A26 1001 A 1 HETATM 17 C C21 A26 . . . C 3 36.725 40.219 36.515 1 20.31 ? C21 A26 1001 A 1 HETATM 18 O O25 A26 . . . C 3 37.368 35.831 34.315 1 24.57 ? O25 A26 1001 A 1 HETATM 19 N N26 A26 . . . C 3 36.16 38.686 32.971 1 24.67 ? N26 A26 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 19 #