data_1TV8
#
_model_server_result.job_id            AgKrj3fb0m1Nz43DT2Sqiw 
_model_server_result.datetime_utc      '2024-11-22 18:25:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1tv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2401}' 
#
_entry.id    1TV8 
#
_exptl.entry_id    1TV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1TV8 
_cell.length_a            47.982 
_cell.length_b            103.305 
_cell.length_c            189.925 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1TV8 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 24 A CYS 24 1_555 E FE1 SF4 . A SF4 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 A SG CYS 28 A CYS 28 1_555 E FE3 SF4 . A SF4 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc3 A SG CYS 31 A CYS 31 1_555 E FE2 SF4 . A SF4 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc4 A SG CYS 261 A CYS 261 1_555 F FE1 SF4 . A SF4 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc5 A SG CYS 264 A CYS 264 1_555 F FE3 SF4 . A SF4 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc6 A SG CYS 278 A CYS 278 1_555 F FE2 SF4 . A SF4 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc7 E FE4 SF4 . A SF4 1401 1_555 D N SAM . A SAM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc8 E FE4 SF4 . A SF4 1401 1_555 D O SAM . A SAM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc9 F FE4 SF4 . A SF4 1402 1_555 G S4 DTU . A DTU 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc10 B SG CYS 24 B CYS 24 1_555 J FE1 SF4 . B SF4 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc11 B SG CYS 28 B CYS 28 1_555 J FE3 SF4 . B SF4 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc12 B SG CYS 31 B CYS 31 1_555 J FE2 SF4 . B SF4 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc13 B SG CYS 261 B CYS 261 1_555 K FE1 SF4 . B SF4 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc14 B SG CYS 264 B CYS 264 1_555 K FE3 SF4 . B SF4 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc15 B SG CYS 278 B CYS 278 1_555 K FE2 SF4 . B SF4 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc16 J FE4 SF4 . B SF4 2401 1_555 I N SAM . B SAM 2501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc17 J FE4 SF4 . B SF4 2401 1_555 I OXT SAM . B SAM 2501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 358 n n 
FE1 S3 SF4 sing 359 n n 
FE1 S4 SF4 sing 360 n n 
FE2 S1 SF4 sing 361 n n 
FE2 S3 SF4 sing 362 n n 
FE2 S4 SF4 sing 363 n n 
FE3 S1 SF4 sing 364 n n 
FE3 S2 SF4 sing 365 n n 
FE3 S4 SF4 sing 366 n n 
FE4 S1 SF4 sing 367 n n 
FE4 S2 SF4 sing 368 n n 
FE4 S3 SF4 sing 369 n n 
#
_atom_sites.entry_id                     1TV8 
_atom_sites.fract_transf_matrix[1][1]    0.020841 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00968 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1403 1403 SO4 SO4 . 
D 3 SAM A 1 1501 1501 SAM SAM . 
E 4 SF4 A 1 1401 1401 SF4 FS4 . 
F 4 SF4 A 1 1402 1402 SF4 FS4 . 
G 5 DTU A 1 1502 1502 DTU DTT . 
H 2 SO4 B 1 2403 2403 SO4 SO4 . 
I 3 SAM B 1 2501 2501 SAM SAM . 
J 4 SF4 B 1 2401 2401 SF4 FS4 . 
K 4 SF4 B 1 2402 2402 SF4 FS4 . 
L 6 HOH A 1 1503 1 HOH HOH . 
L 6 HOH A 2 1504 3 HOH HOH . 
L 6 HOH A 3 1505 4 HOH HOH . 
L 6 HOH A 4 1506 5 HOH HOH . 
L 6 HOH A 5 1507 6 HOH HOH . 
L 6 HOH A 6 1508 7 HOH HOH . 
L 6 HOH A 7 1509 8 HOH HOH . 
L 6 HOH A 8 1510 10 HOH HOH . 
L 6 HOH A 9 1511 14 HOH HOH . 
L 6 HOH A 10 1512 15 HOH HOH . 
L 6 HOH A 11 1513 16 HOH HOH . 
L 6 HOH A 12 1514 18 HOH HOH . 
L 6 HOH A 13 1515 19 HOH HOH . 
L 6 HOH A 14 1516 20 HOH HOH . 
L 6 HOH A 15 1517 22 HOH HOH . 
L 6 HOH A 16 1518 23 HOH HOH . 
L 6 HOH A 17 1519 24 HOH HOH . 
L 6 HOH A 18 1520 25 HOH HOH . 
L 6 HOH A 19 1521 26 HOH HOH . 
L 6 HOH A 20 1522 27 HOH HOH . 
L 6 HOH A 21 1523 28 HOH HOH . 
L 6 HOH A 22 1524 29 HOH HOH . 
L 6 HOH A 23 1525 30 HOH HOH . 
L 6 HOH A 24 1526 31 HOH HOH . 
L 6 HOH A 25 1527 32 HOH HOH . 
L 6 HOH A 26 1528 33 HOH HOH . 
L 6 HOH A 27 1529 34 HOH HOH . 
L 6 HOH A 28 1530 35 HOH HOH . 
L 6 HOH A 29 1531 36 HOH HOH . 
L 6 HOH A 30 1532 37 HOH HOH . 
L 6 HOH A 31 1533 38 HOH HOH . 
L 6 HOH A 32 1534 39 HOH HOH . 
L 6 HOH A 33 1535 41 HOH HOH . 
L 6 HOH A 34 1536 42 HOH HOH . 
L 6 HOH A 35 1537 46 HOH HOH . 
L 6 HOH A 36 1538 47 HOH HOH . 
L 6 HOH A 37 1539 50 HOH HOH . 
L 6 HOH A 38 1540 51 HOH HOH . 
L 6 HOH A 39 1541 52 HOH HOH . 
L 6 HOH A 40 1542 53 HOH HOH . 
L 6 HOH A 41 1543 55 HOH HOH . 
L 6 HOH A 42 1544 56 HOH HOH . 
L 6 HOH A 43 1545 58 HOH HOH . 
L 6 HOH A 44 1546 59 HOH HOH . 
L 6 HOH A 45 1547 60 HOH HOH . 
L 6 HOH A 46 1548 61 HOH HOH . 
L 6 HOH A 47 1549 62 HOH HOH . 
L 6 HOH A 48 1550 63 HOH HOH . 
L 6 HOH A 49 1551 65 HOH HOH . 
L 6 HOH A 50 1552 66 HOH HOH . 
L 6 HOH A 51 1553 68 HOH HOH . 
L 6 HOH A 52 1554 69 HOH HOH . 
L 6 HOH A 53 1555 70 HOH HOH . 
L 6 HOH A 54 1556 71 HOH HOH . 
L 6 HOH A 55 1557 72 HOH HOH . 
L 6 HOH A 56 1558 73 HOH HOH . 
L 6 HOH A 57 1559 75 HOH HOH . 
L 6 HOH A 58 1560 78 HOH HOH . 
L 6 HOH A 59 1561 79 HOH HOH . 
L 6 HOH A 60 1562 80 HOH HOH . 
L 6 HOH A 61 1563 81 HOH HOH . 
L 6 HOH A 62 1564 85 HOH HOH . 
L 6 HOH A 63 1565 86 HOH HOH . 
L 6 HOH A 64 1566 87 HOH HOH . 
L 6 HOH A 65 1567 90 HOH HOH . 
L 6 HOH A 66 1568 91 HOH HOH . 
L 6 HOH A 67 1569 92 HOH HOH . 
L 6 HOH A 68 1570 93 HOH HOH . 
L 6 HOH A 69 1571 94 HOH HOH . 
L 6 HOH A 70 1572 96 HOH HOH . 
L 6 HOH A 71 1573 97 HOH HOH . 
L 6 HOH A 72 1574 100 HOH HOH . 
L 6 HOH A 73 1575 103 HOH HOH . 
L 6 HOH A 74 1576 104 HOH HOH . 
L 6 HOH A 75 1577 107 HOH HOH . 
L 6 HOH A 76 1578 108 HOH HOH . 
L 6 HOH A 77 1579 110 HOH HOH . 
L 6 HOH A 78 1580 111 HOH HOH . 
L 6 HOH A 79 1581 112 HOH HOH . 
L 6 HOH A 80 1582 114 HOH HOH . 
L 6 HOH A 81 1583 115 HOH HOH . 
L 6 HOH A 82 1584 117 HOH HOH . 
L 6 HOH A 83 1585 118 HOH HOH . 
L 6 HOH A 84 1586 120 HOH HOH . 
L 6 HOH A 85 1587 122 HOH HOH . 
L 6 HOH A 86 1588 124 HOH HOH . 
L 6 HOH A 87 1589 125 HOH HOH . 
L 6 HOH A 88 1590 126 HOH HOH . 
L 6 HOH A 89 1591 128 HOH HOH . 
L 6 HOH A 90 1592 130 HOH HOH . 
L 6 HOH A 91 1593 132 HOH HOH . 
L 6 HOH A 92 1594 133 HOH HOH . 
L 6 HOH A 93 1595 134 HOH HOH . 
L 6 HOH A 94 1596 135 HOH HOH . 
L 6 HOH A 95 1597 137 HOH HOH . 
L 6 HOH A 96 1598 138 HOH HOH . 
M 6 HOH B 1 2502 11 HOH HOH . 
M 6 HOH B 2 2503 12 HOH HOH . 
M 6 HOH B 3 2504 13 HOH HOH . 
M 6 HOH B 4 2505 17 HOH HOH . 
M 6 HOH B 5 2506 40 HOH HOH . 
M 6 HOH B 6 2507 44 HOH HOH . 
M 6 HOH B 7 2508 45 HOH HOH . 
M 6 HOH B 8 2509 48 HOH HOH . 
M 6 HOH B 9 2510 49 HOH HOH . 
M 6 HOH B 10 2511 57 HOH HOH . 
M 6 HOH B 11 2512 64 HOH HOH . 
M 6 HOH B 12 2513 67 HOH HOH . 
M 6 HOH B 13 2514 74 HOH HOH . 
M 6 HOH B 14 2515 82 HOH HOH . 
M 6 HOH B 15 2516 83 HOH HOH . 
M 6 HOH B 16 2517 88 HOH HOH . 
M 6 HOH B 17 2518 95 HOH HOH . 
M 6 HOH B 18 2519 101 HOH HOH . 
M 6 HOH B 19 2520 102 HOH HOH . 
M 6 HOH B 20 2521 105 HOH HOH . 
M 6 HOH B 21 2522 106 HOH HOH . 
M 6 HOH B 22 2523 109 HOH HOH . 
M 6 HOH B 23 2524 113 HOH HOH . 
M 6 HOH B 24 2525 116 HOH HOH . 
M 6 HOH B 25 2526 119 HOH HOH . 
M 6 HOH B 26 2527 121 HOH HOH . 
M 6 HOH B 27 2528 123 HOH HOH . 
M 6 HOH B 28 2529 127 HOH HOH . 
M 6 HOH B 29 2530 129 HOH HOH . 
M 6 HOH B 30 2531 131 HOH HOH . 
M 6 HOH B 31 2532 136 HOH HOH . 
M 6 HOH B 32 2533 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . J 4 44.183 49.091 53.866 1 43.47 ? FE1 SF4 2401 B 1 
HETATM 2 FE FE2 SF4 . . . J 4 43.983 50.839 52.087 1 39.08 ? FE2 SF4 2401 B 1 
HETATM 3 FE FE3 SF4 . . . J 4 44.701 48.655 51.176 1 44.02 ? FE3 SF4 2401 B 1 
HETATM 4 FE FE4 SF4 . . . J 4 42.022 48.79 52.083 1 42.76 ? FE4 SF4 2401 B 1 
HETATM 5 S S1 SF4 . . . J 4 43.058 49.771 50.193 1 43.16 ? S1 SF4 2401 B 1 
HETATM 6 S S2 SF4 . . . J 4 43.679 47.2 52.597 1 37.48 ? S2 SF4 2401 B 1 
HETATM 7 S S3 SF4 . . . J 4 42.34 50.484 53.66 1 41.85 ? S3 SF4 2401 B 1 
HETATM 8 S S4 SF4 . . . J 4 46.023 49.987 52.786 1 44.82 ? S4 SF4 2401 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#