data_1TVK # _model_server_result.job_id iv7marj3wFa3q1DIGROwuQ _model_server_result.datetime_utc '2024-11-05 08:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":9500}' # _entry.id 1TVK # _exptl.entry_id 1TVK _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TVK _cell.length_a 81.2 _cell.length_b 93.5 _cell.length_c 90 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 249 n n PG O2G GTP sing 250 n n PG O3G GTP sing 251 n n PG O3B GTP sing 252 n n O2G HOG2 GTP sing 253 n n O3G HOG3 GTP sing 254 n n O3B PB GTP sing 255 n n PB O1B GTP doub 256 n n PB O2B GTP sing 257 n n PB O3A GTP sing 258 n n O2B HOB2 GTP sing 259 n n O3A PA GTP sing 260 n n PA O1A GTP doub 261 n n PA O2A GTP sing 262 n n PA O5' GTP sing 263 n n O2A HOA2 GTP sing 264 n n O5' C5' GTP sing 265 n n C5' C4' GTP sing 266 n n C5' H5' GTP sing 267 n n C5' "H5''" GTP sing 268 n n C4' O4' GTP sing 269 n n C4' C3' GTP sing 270 n n C4' H4' GTP sing 271 n n O4' C1' GTP sing 272 n n C3' O3' GTP sing 273 n n C3' C2' GTP sing 274 n n C3' H3' GTP sing 275 n n O3' HO3' GTP sing 276 n n C2' O2' GTP sing 277 n n C2' C1' GTP sing 278 n n C2' H2' GTP sing 279 n n O2' HO2' GTP sing 280 n n C1' N9 GTP sing 281 n n C1' H1' GTP sing 282 n n N9 C8 GTP sing 283 n y N9 C4 GTP sing 284 n y C8 N7 GTP doub 285 n y C8 H8 GTP sing 286 n n N7 C5 GTP sing 287 n y C5 C6 GTP sing 288 n n C5 C4 GTP doub 289 n y C6 O6 GTP doub 290 n n C6 N1 GTP sing 291 n n N1 C2 GTP sing 292 n n N1 HN1 GTP sing 293 n n C2 N2 GTP sing 294 n n C2 N3 GTP doub 295 n n N2 HN21 GTP sing 296 n n N2 HN22 GTP sing 297 n n N3 C4 GTP sing 298 n n # _atom_sites.entry_id 1TVK _atom_sites.fract_transf_matrix[1][1] 0.012315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP A 1 9500 9500 GTP GTP . D 4 GDP B 1 1500 1500 GDP GDP . E 5 EP B 1 1001 1001 EP EP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 22.225 3.672 5.576 1 107.99 ? PG GTP 9500 A 1 HETATM 2 O O1G GTP . . . C 3 21.195 4.091 4.584 1 107.99 ? O1G GTP 9500 A 1 HETATM 3 O O2G GTP . . . C 3 21.831 2.837 6.744 1 107.99 ? O2G GTP 9500 A 1 HETATM 4 O O3G GTP . . . C 3 22.884 4.89 6.099 1 107.99 ? O3G GTP 9500 A 1 HETATM 5 O O3B GTP . . . C 3 23.279 2.943 4.835 1 107.99 ? O3B GTP 9500 A 1 HETATM 6 P PB GTP . . . C 3 24.471 2.36 5.483 1 107.99 ? PB GTP 9500 A 1 HETATM 7 O O1B GTP . . . C 3 23.952 1.624 6.668 1 107.99 ? O1B GTP 9500 A 1 HETATM 8 O O2B GTP . . . C 3 25.431 3.474 5.679 1 107.99 ? O2B GTP 9500 A 1 HETATM 9 O O3A GTP . . . C 3 25.08 1.344 4.568 1 107.99 ? O3A GTP 9500 A 1 HETATM 10 P PA GTP . . . C 3 25.091 -0.143 4.637 1 107.99 ? PA GTP 9500 A 1 HETATM 11 O O1A GTP . . . C 3 23.896 -0.588 3.882 1 107.99 ? O1A GTP 9500 A 1 HETATM 12 O O2A GTP . . . C 3 25.234 -0.521 6.067 1 107.99 ? O2A GTP 9500 A 1 HETATM 13 O O5' GTP . . . C 3 26.381 -0.716 3.896 1 107.99 ? O5' GTP 9500 A 1 HETATM 14 C C5' GTP . . . C 3 26.388 -0.964 2.489 1 107.99 ? C5' GTP 9500 A 1 HETATM 15 C C4' GTP . . . C 3 26.238 -2.451 2.2 1 107.99 ? C4' GTP 9500 A 1 HETATM 16 O O4' GTP . . . C 3 27.274 -3.207 2.885 1 107.99 ? O4' GTP 9500 A 1 HETATM 17 C C3' GTP . . . C 3 24.951 -3.113 2.666 1 107.99 ? C3' GTP 9500 A 1 HETATM 18 O O3' GTP . . . C 3 23.904 -2.893 1.731 1 107.99 ? O3' GTP 9500 A 1 HETATM 19 C C2' GTP . . . C 3 25.339 -4.583 2.697 1 107.99 ? C2' GTP 9500 A 1 HETATM 20 O O2' GTP . . . C 3 25.274 -5.174 1.414 1 107.99 ? O2' GTP 9500 A 1 HETATM 21 C C1' GTP . . . C 3 26.788 -4.504 3.2 1 107.99 ? C1' GTP 9500 A 1 HETATM 22 N N9 GTP . . . C 3 26.943 -4.72 4.64 1 107.99 ? N9 GTP 9500 A 1 HETATM 23 C C8 GTP . . . C 3 26.106 -4.276 5.634 1 107.99 ? C8 GTP 9500 A 1 HETATM 24 N N7 GTP . . . C 3 26.506 -4.612 6.829 1 107.99 ? N7 GTP 9500 A 1 HETATM 25 C C5 GTP . . . C 3 27.678 -5.32 6.616 1 107.99 ? C5 GTP 9500 A 1 HETATM 26 C C6 GTP . . . C 3 28.566 -5.909 7.538 1 107.99 ? C6 GTP 9500 A 1 HETATM 27 O O6 GTP . . . C 3 28.497 -5.925 8.766 1 107.99 ? O6 GTP 9500 A 1 HETATM 28 N N1 GTP . . . C 3 29.633 -6.524 6.899 1 107.99 ? N1 GTP 9500 A 1 HETATM 29 C C2 GTP . . . C 3 29.823 -6.562 5.548 1 107.99 ? C2 GTP 9500 A 1 HETATM 30 N N2 GTP . . . C 3 30.915 -7.204 5.132 1 107.99 ? N2 GTP 9500 A 1 HETATM 31 N N3 GTP . . . C 3 29.004 -6.008 4.67 1 107.99 ? N3 GTP 9500 A 1 HETATM 32 C C4 GTP . . . C 3 27.959 -5.405 5.27 1 107.99 ? C4 GTP 9500 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #