data_1TVW # _model_server_result.job_id cMmabamOmbjgFDyzz71Sag _model_server_result.datetime_utc '2024-10-10 21:21:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":318}' # _entry.id 1TVW # _exptl.entry_id 1TVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TVW _cell.length_a 78.5 _cell.length_b 78.5 _cell.length_c 230.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -115.05 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CB3 sing 70 n y N1 C8A CB3 sing 71 n y N1 HN1 CB3 sing 72 n n C2 NA2 CB3 sing 73 n n C2 N3 CB3 doub 74 n y NA2 HN21 CB3 sing 75 n n NA2 HN22 CB3 sing 76 n n N3 C4 CB3 sing 77 n y C4 O4 CB3 doub 78 n n C4 C4A CB3 sing 79 n y C4A C5 CB3 doub 80 n y C4A C8A CB3 sing 81 n y C5 C6 CB3 sing 82 n y C5 H5 CB3 sing 83 n n C6 C7 CB3 doub 84 n y C6 C9 CB3 sing 85 n n C7 C8 CB3 sing 86 n y C7 H7 CB3 sing 87 n n C8 C8A CB3 doub 88 n y C8 H8 CB3 sing 89 n n C9 N10 CB3 sing 90 n n C9 H91 CB3 sing 91 n n C9 H92 CB3 sing 92 n n N10 C14 CB3 sing 93 n n N10 CP1 CB3 sing 94 n n C11 C12 CB3 doub 95 n y C11 C16 CB3 sing 96 n y C11 C CB3 sing 97 n n C12 C13 CB3 sing 98 n y C12 H12 CB3 sing 99 n n C13 C14 CB3 doub 100 n y C13 H13 CB3 sing 101 n n C14 C15 CB3 sing 102 n y C15 C16 CB3 doub 103 n y C15 H15 CB3 sing 104 n n C16 H16 CB3 sing 105 n n C O CB3 doub 106 n n C N CB3 sing 107 n n N CA CB3 sing 108 n n N HN CB3 sing 109 n n CA CB CB3 sing 110 n n CA CT CB3 sing 111 n n CA HA CB3 sing 112 n n CB CG CB3 sing 113 n n CB HB1 CB3 sing 114 n n CB HB2 CB3 sing 115 n n CG CD CB3 sing 116 n n CG HG1 CB3 sing 117 n n CG HG2 CB3 sing 118 n n CD OE1 CB3 doub 119 n n CD OE2 CB3 sing 120 n n OE2 HOE2 CB3 sing 121 n n CT O1 CB3 doub 122 n n CT O2 CB3 sing 123 n n O2 HO2 CB3 sing 124 n n CP1 CP2 CB3 sing 125 n n CP1 HP11 CB3 sing 126 n n CP1 HP12 CB3 sing 127 n n CP2 CP3 CB3 trip 128 n n CP3 HP3 CB3 sing 129 n n # _atom_sites.entry_id 1TVW _atom_sites.fract_transf_matrix[1][1] 0.012739 _atom_sites.fract_transf_matrix[1][2] 0.007355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UMP A 1 317 317 UMP UMP . C 3 CB3 A 1 318 318 CB3 CB3 . D 4 HOH A 1 319 319 HOH HOH . D 4 HOH A 2 320 320 HOH HOH . D 4 HOH A 3 321 321 HOH HOH . D 4 HOH A 4 323 323 HOH HOH . D 4 HOH A 5 324 324 HOH HOH . D 4 HOH A 6 325 325 HOH HOH . D 4 HOH A 7 326 326 HOH HOH . D 4 HOH A 8 327 327 HOH HOH . D 4 HOH A 9 328 328 HOH HOH . D 4 HOH A 10 329 329 HOH HOH . D 4 HOH A 11 330 330 HOH HOH . D 4 HOH A 12 331 331 HOH HOH . D 4 HOH A 13 332 332 HOH HOH . D 4 HOH A 14 333 333 HOH HOH . D 4 HOH A 15 334 334 HOH HOH . D 4 HOH A 16 335 335 HOH HOH . D 4 HOH A 17 336 336 HOH HOH . D 4 HOH A 18 337 337 HOH HOH . D 4 HOH A 19 338 338 HOH HOH . D 4 HOH A 20 339 339 HOH HOH . D 4 HOH A 21 340 340 HOH HOH . D 4 HOH A 22 341 341 HOH HOH . D 4 HOH A 23 342 342 HOH HOH . D 4 HOH A 24 343 343 HOH HOH . D 4 HOH A 25 344 344 HOH HOH . D 4 HOH A 26 345 345 HOH HOH . D 4 HOH A 27 346 346 HOH HOH . D 4 HOH A 28 347 347 HOH HOH . D 4 HOH A 29 348 348 HOH HOH . D 4 HOH A 30 349 349 HOH HOH . D 4 HOH A 31 350 350 HOH HOH . D 4 HOH A 32 351 351 HOH HOH . D 4 HOH A 33 352 352 HOH HOH . D 4 HOH A 34 353 353 HOH HOH . D 4 HOH A 35 354 354 HOH HOH . D 4 HOH A 36 355 355 HOH HOH . D 4 HOH A 37 356 356 HOH HOH . D 4 HOH A 38 357 357 HOH HOH . D 4 HOH A 39 358 358 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . C 3 19.053 48.01 -52.559 1 37.18 ? N1 CB3 318 A 1 HETATM 2 C C2 CB3 . . . C 3 19.362 46.779 -52.988 1 39.05 ? C2 CB3 318 A 1 HETATM 3 N NA2 CB3 . . . C 3 19.789 46.594 -54.244 1 43.9 ? NA2 CB3 318 A 1 HETATM 4 N N3 CB3 . . . C 3 19.153 45.708 -52.214 1 38.43 ? N3 CB3 318 A 1 HETATM 5 C C4 CB3 . . . C 3 18.719 45.819 -50.955 1 38.52 ? C4 CB3 318 A 1 HETATM 6 O O4 CB3 . . . C 3 18.665 44.711 -50.133 1 39.25 ? O4 CB3 318 A 1 HETATM 7 C C4A CB3 . . . C 3 18.412 47.074 -50.45 1 39.1 ? C4A CB3 318 A 1 HETATM 8 C C5 CB3 . . . C 3 18.036 47.257 -49.106 1 37.18 ? C5 CB3 318 A 1 HETATM 9 C C6 CB3 . . . C 3 17.847 48.577 -48.636 1 37.31 ? C6 CB3 318 A 1 HETATM 10 C C7 CB3 . . . C 3 17.978 49.656 -49.539 1 36.85 ? C7 CB3 318 A 1 HETATM 11 C C8 CB3 . . . C 3 18.347 49.48 -50.882 1 37.49 ? C8 CB3 318 A 1 HETATM 12 C C8A CB3 . . . C 3 18.589 48.184 -51.328 1 38.17 ? C8A CB3 318 A 1 HETATM 13 C C9 CB3 . . . C 3 17.813 48.944 -47.187 1 37.1 ? C9 CB3 318 A 1 HETATM 14 N N10 CB3 . . . C 3 17.419 47.908 -45.983 1 39.28 ? N10 CB3 318 A 1 HETATM 15 C C11 CB3 . . . C 3 20.216 45.225 -44.119 1 41.73 ? C11 CB3 318 A 1 HETATM 16 C C12 CB3 . . . C 3 18.914 44.782 -44.485 1 38.93 ? C12 CB3 318 A 1 HETATM 17 C C13 CB3 . . . C 3 17.977 45.652 -45.094 1 38.5 ? C13 CB3 318 A 1 HETATM 18 C C14 CB3 . . . C 3 18.293 47.01 -45.381 1 39.78 ? C14 CB3 318 A 1 HETATM 19 C C15 CB3 . . . C 3 19.595 47.431 -45.048 1 41.14 ? C15 CB3 318 A 1 HETATM 20 C C16 CB3 . . . C 3 20.525 46.562 -44.445 1 41.06 ? C16 CB3 318 A 1 HETATM 21 C C CB3 . . . C 3 21.16 44.544 -43.167 1 42.74 ? C CB3 318 A 1 HETATM 22 O O CB3 . . . C 3 21.515 45.127 -42.132 1 41.09 ? O CB3 318 A 1 HETATM 23 N N CB3 . . . C 3 21.749 43.341 -43.333 1 40.97 ? N CB3 318 A 1 HETATM 24 C CA CB3 . . . C 3 21.098 42.111 -43.853 1 41.83 ? CA CB3 318 A 1 HETATM 25 C CB CB3 . . . C 3 21.829 41.21 -44.859 1 41.05 ? CB CB3 318 A 1 HETATM 26 C CG CB3 . . . C 3 23.307 41.4 -44.899 1 40.47 ? CG CB3 318 A 1 HETATM 27 C CD CB3 . . . C 3 23.734 42.09 -46.18 1 41.05 ? CD CB3 318 A 1 HETATM 28 O OE1 CB3 . . . C 3 24.553 43.024 -46.105 1 41.08 ? OE1 CB3 318 A 1 HETATM 29 O OE2 CB3 . . . C 3 23.309 41.649 -47.292 1 39.1 ? OE2 CB3 318 A 1 HETATM 30 C CT CB3 . . . C 3 20.339 41.247 -42.866 1 44.2 ? CT CB3 318 A 1 HETATM 31 O O1 CB3 . . . C 3 20.145 40.056 -43.177 1 46.91 ? O1 CB3 318 A 1 HETATM 32 O O2 CB3 . . . C 3 19.928 41.754 -41.806 1 42.1 ? O2 CB3 318 A 1 HETATM 33 C CP1 CB3 . . . C 3 15.975 47.916 -45.718 1 36.75 ? CP1 CB3 318 A 1 HETATM 34 C CP2 CB3 . . . C 3 15.502 46.588 -46.001 1 35.24 ? CP2 CB3 318 A 1 HETATM 35 C CP3 CB3 . . . C 3 15.179 45.444 -46.118 1 34.25 ? CP3 CB3 318 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #