data_1TW2 # _model_server_result.job_id b8jyormeCmJsIbp13TFrFw _model_server_result.datetime_utc '2024-11-26 23:36:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1TW2 # _exptl.entry_id 1TW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 599.626 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL (4R)-2-ETHYL-2,5,12-TRIHYDROXY-7-METHOXY-6,11-DIOXO-4-{[2,3,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-RIBO-HEXOPYRANOSYL]OXY}-1H,2H,3H,4H,6H,11H-TETRACENE-1-CARBOXYLATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TW2 _cell.length_a 60.682 _cell.length_b 102.582 _cell.length_c 124.256 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C31 H37 N O11' _chem_comp.formula_weight 599.626 _chem_comp.id ERT _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL (4R)-2-ETHYL-2,5,12-TRIHYDROXY-7-METHOXY-6,11-DIOXO-4-{[2,3,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-RIBO-HEXOPYRANOSYL]OXY}-1H,2H,3H,4H,6H,11H-TETRACENE-1-CARBOXYLATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-METHOXY-E-RHODOMYCIN T' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C11 ERT sing 83 n n O11 H11 ERT sing 84 n n C11 C18 ERT doub 85 n y C11 C19 ERT sing 86 n y C18 C17 ERT sing 87 n y C18 C12 ERT sing 88 n n C17 C6 ERT doub 89 n y C17 C5 ERT sing 90 n n C6 O6 ERT sing 91 n n C6 C20 ERT sing 92 n y O6 HO6 ERT sing 93 n n C5 O5 ERT doub 94 n n C5 C16 ERT sing 95 n n C16 C4 ERT doub 96 n y C16 C15 ERT sing 97 n y C4 O4 ERT sing 98 n n C4 C3 ERT sing 99 n y O4 C40 ERT sing 100 n n C40 H401 ERT sing 101 n n C40 H402 ERT sing 102 n n C40 H403 ERT sing 103 n n C3 C2 ERT doub 104 n y C3 H4 ERT sing 105 n n C2 C1 ERT sing 106 n y C2 H3 ERT sing 107 n n C15 C1 ERT doub 108 n y C15 C12 ERT sing 109 n n C1 H2 ERT sing 110 n n C12 O12 ERT doub 111 n n C19 C10 ERT sing 112 n n C19 C20 ERT doub 113 n y C10 C21 ERT sing 114 n n C10 C9 ERT sing 115 n n C10 H10 ERT sing 116 n n C21 O13 ERT doub 117 n n C21 O10 ERT sing 118 n n O10 C22 ERT sing 119 n n C22 H221 ERT sing 120 n n C22 H222 ERT sing 121 n n C22 H223 ERT sing 122 n n C20 C7 ERT sing 123 n n C7 C8 ERT sing 124 n n C7 O7 ERT sing 125 n n C7 H7 ERT sing 126 n n C8 C9 ERT sing 127 n n C8 H81 ERT sing 128 n n C8 H82 ERT sing 129 n n C9 C13 ERT sing 130 n n C9 O9 ERT sing 131 n n C13 C14 ERT sing 132 n n C13 H131 ERT sing 133 n n C13 H132 ERT sing 134 n n C14 H141 ERT sing 135 n n C14 H142 ERT sing 136 n n C14 H143 ERT sing 137 n n O9 HO9 ERT sing 138 n n O7 C1' ERT sing 139 n n C1' C2' ERT sing 140 n n C1' O5' ERT sing 141 n n C1' H1' ERT sing 142 n n C2' C3' ERT sing 143 n n C2' "H2'1" ERT sing 144 n n C2' "H2'2" ERT sing 145 n n C3' N3' ERT sing 146 n n C3' C4' ERT sing 147 n n C3' H3' ERT sing 148 n n N3' C7' ERT sing 149 n n N3' C8' ERT sing 150 n n C7' "H7'1" ERT sing 151 n n C7' "H7'2" ERT sing 152 n n C7' "H7'3" ERT sing 153 n n C8' "H8'1" ERT sing 154 n n C8' "H8'2" ERT sing 155 n n C8' "H8'3" ERT sing 156 n n C4' O4' ERT sing 157 n n C4' C5' ERT sing 158 n n C4' H4' ERT sing 159 n n O4' H1 ERT sing 160 n n C5' O5' ERT sing 161 n n C5' C6' ERT sing 162 n n C5' H5' ERT sing 163 n n C6' "H6'1" ERT sing 164 n n C6' "H6'2" ERT sing 165 n n C6' "H6'3" ERT sing 166 n n # _atom_sites.entry_id 1TW2 _atom_sites.fract_transf_matrix[1][1] 0.016479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 635 635 SAH SIM . D 3 ERT A 1 600 600 ERT AKN . E 2 SAH B 1 1635 635 SAH SIM . F 3 ERT B 1 1600 600 ERT AKN . G 4 HOH A 1 636 1 HOH WAT . G 4 HOH A 2 637 3 HOH WAT . G 4 HOH A 3 638 5 HOH WAT . G 4 HOH A 4 639 18 HOH WAT . G 4 HOH A 5 640 19 HOH WAT . G 4 HOH A 6 641 21 HOH WAT . G 4 HOH A 7 642 23 HOH WAT . G 4 HOH A 8 643 24 HOH WAT . G 4 HOH A 9 644 28 HOH WAT . G 4 HOH A 10 645 31 HOH WAT . G 4 HOH A 11 646 35 HOH WAT . G 4 HOH A 12 647 37 HOH WAT . G 4 HOH A 13 648 41 HOH WAT . G 4 HOH A 14 649 46 HOH WAT . G 4 HOH A 15 650 47 HOH WAT . G 4 HOH A 16 651 48 HOH WAT . G 4 HOH A 17 652 54 HOH WAT . G 4 HOH A 18 653 58 HOH WAT . G 4 HOH A 19 654 60 HOH WAT . G 4 HOH A 20 655 66 HOH WAT . G 4 HOH A 21 656 75 HOH WAT . G 4 HOH A 22 657 79 HOH WAT . G 4 HOH A 23 658 80 HOH WAT . G 4 HOH A 24 659 82 HOH WAT . G 4 HOH A 25 660 84 HOH WAT . G 4 HOH A 26 661 89 HOH WAT . G 4 HOH A 27 662 95 HOH WAT . G 4 HOH A 28 663 96 HOH WAT . G 4 HOH A 29 664 102 HOH WAT . G 4 HOH A 30 665 103 HOH WAT . G 4 HOH A 31 666 109 HOH WAT . G 4 HOH A 32 667 121 HOH WAT . G 4 HOH A 33 668 125 HOH WAT . G 4 HOH A 34 669 128 HOH WAT . G 4 HOH A 35 670 140 HOH WAT . G 4 HOH A 36 671 143 HOH WAT . G 4 HOH A 37 672 150 HOH WAT . G 4 HOH A 38 673 151 HOH WAT . G 4 HOH A 39 674 158 HOH WAT . G 4 HOH A 40 675 161 HOH WAT . G 4 HOH A 41 676 172 HOH WAT . G 4 HOH A 42 677 175 HOH WAT . G 4 HOH A 43 678 188 HOH WAT . G 4 HOH A 44 679 189 HOH WAT . G 4 HOH A 45 680 213 HOH WAT . G 4 HOH A 46 681 4 HOH WAT . G 4 HOH A 47 682 7 HOH WAT . G 4 HOH A 48 683 8 HOH WAT . G 4 HOH A 49 684 9 HOH WAT . G 4 HOH A 50 685 10 HOH WAT . G 4 HOH A 51 686 12 HOH WAT . G 4 HOH A 52 687 15 HOH WAT . G 4 HOH A 53 688 17 HOH WAT . G 4 HOH A 54 689 19 HOH WAT . G 4 HOH A 55 690 20 HOH WAT . G 4 HOH A 56 691 25 HOH WAT . G 4 HOH A 57 692 26 HOH WAT . G 4 HOH A 58 693 27 HOH WAT . G 4 HOH A 59 694 31 HOH WAT . G 4 HOH A 60 695 34 HOH WAT . G 4 HOH A 61 696 38 HOH WAT . G 4 HOH A 62 697 39 HOH WAT . G 4 HOH A 63 698 41 HOH WAT . G 4 HOH A 64 699 47 HOH WAT . G 4 HOH A 65 700 49 HOH WAT . G 4 HOH A 66 701 50 HOH WAT . G 4 HOH A 67 702 54 HOH WAT . G 4 HOH A 68 703 56 HOH WAT . G 4 HOH A 69 704 59 HOH WAT . G 4 HOH A 70 705 60 HOH WAT . G 4 HOH A 71 706 63 HOH WAT . G 4 HOH A 72 707 64 HOH WAT . G 4 HOH A 73 708 65 HOH WAT . G 4 HOH A 74 709 68 HOH WAT . G 4 HOH A 75 710 69 HOH WAT . G 4 HOH A 76 711 74 HOH WAT . G 4 HOH A 77 712 76 HOH WAT . G 4 HOH A 78 713 84 HOH WAT . G 4 HOH A 79 714 85 HOH WAT . G 4 HOH A 80 715 86 HOH WAT . G 4 HOH A 81 716 99 HOH WAT . G 4 HOH A 82 717 136 HOH WAT . G 4 HOH A 83 718 158 HOH WAT . G 4 HOH A 84 719 160 HOH WAT . G 4 HOH A 85 720 161 HOH WAT . G 4 HOH A 86 721 162 HOH WAT . G 4 HOH A 87 722 163 HOH WAT . G 4 HOH A 88 723 165 HOH WAT . G 4 HOH A 89 724 166 HOH WAT . G 4 HOH A 90 725 167 HOH WAT . G 4 HOH A 91 726 168 HOH WAT . G 4 HOH A 92 727 169 HOH WAT . G 4 HOH A 93 728 170 HOH WAT . G 4 HOH A 94 729 171 HOH WAT . G 4 HOH A 95 730 172 HOH WAT . G 4 HOH A 96 731 173 HOH WAT . G 4 HOH A 97 732 176 HOH WAT . H 4 HOH B 1 1636 4 HOH WAT . H 4 HOH B 2 1637 6 HOH WAT . H 4 HOH B 3 1638 8 HOH WAT . H 4 HOH B 4 1639 9 HOH WAT . H 4 HOH B 5 1640 10 HOH WAT . H 4 HOH B 6 1641 11 HOH WAT . H 4 HOH B 7 1642 13 HOH WAT . H 4 HOH B 8 1643 14 HOH WAT . H 4 HOH B 9 1644 15 HOH WAT . H 4 HOH B 10 1645 16 HOH WAT . H 4 HOH B 11 1646 22 HOH WAT . H 4 HOH B 12 1647 25 HOH WAT . H 4 HOH B 13 1648 26 HOH WAT . H 4 HOH B 14 1649 32 HOH WAT . H 4 HOH B 15 1650 33 HOH WAT . H 4 HOH B 16 1651 39 HOH WAT . H 4 HOH B 17 1652 40 HOH WAT . H 4 HOH B 18 1653 42 HOH WAT . H 4 HOH B 19 1654 50 HOH WAT . H 4 HOH B 20 1655 52 HOH WAT . H 4 HOH B 21 1656 61 HOH WAT . H 4 HOH B 22 1657 62 HOH WAT . H 4 HOH B 23 1658 72 HOH WAT . H 4 HOH B 24 1659 73 HOH WAT . H 4 HOH B 25 1660 77 HOH WAT . H 4 HOH B 26 1661 88 HOH WAT . H 4 HOH B 27 1662 93 HOH WAT . H 4 HOH B 28 1663 101 HOH WAT . H 4 HOH B 29 1664 107 HOH WAT . H 4 HOH B 30 1665 120 HOH WAT . H 4 HOH B 31 1666 126 HOH WAT . H 4 HOH B 32 1667 186 HOH WAT . H 4 HOH B 33 1668 187 HOH WAT . H 4 HOH B 34 1669 190 HOH WAT . H 4 HOH B 35 1670 207 HOH WAT . H 4 HOH B 36 1671 6 HOH WAT . H 4 HOH B 37 1672 11 HOH WAT . H 4 HOH B 38 1673 13 HOH WAT . H 4 HOH B 39 1674 14 HOH WAT . H 4 HOH B 40 1675 18 HOH WAT . H 4 HOH B 41 1676 21 HOH WAT . H 4 HOH B 42 1677 24 HOH WAT . H 4 HOH B 43 1678 28 HOH WAT . H 4 HOH B 44 1679 29 HOH WAT . H 4 HOH B 45 1680 30 HOH WAT . H 4 HOH B 46 1681 35 HOH WAT . H 4 HOH B 47 1682 36 HOH WAT . H 4 HOH B 48 1683 42 HOH WAT . H 4 HOH B 49 1684 43 HOH WAT . H 4 HOH B 50 1685 48 HOH WAT . H 4 HOH B 51 1686 51 HOH WAT . H 4 HOH B 52 1687 52 HOH WAT . H 4 HOH B 53 1688 53 HOH WAT . H 4 HOH B 54 1689 57 HOH WAT . H 4 HOH B 55 1690 58 HOH WAT . H 4 HOH B 56 1691 66 HOH WAT . H 4 HOH B 57 1692 67 HOH WAT . H 4 HOH B 58 1693 75 HOH WAT . H 4 HOH B 59 1694 77 HOH WAT . H 4 HOH B 60 1695 80 HOH WAT . H 4 HOH B 61 1696 83 HOH WAT . H 4 HOH B 62 1697 98 HOH WAT . H 4 HOH B 63 1698 146 HOH WAT . H 4 HOH B 64 1699 164 HOH WAT . H 4 HOH B 65 1700 174 HOH WAT . H 4 HOH B 66 1701 175 HOH WAT . H 4 HOH B 67 1702 177 HOH WAT . H 4 HOH B 68 1703 178 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 ERT . . . D 3 24.206 62.718 14.856 1 28.67 ? O11 ERT 600 A 1 HETATM 2 C C11 ERT . . . D 3 23.71 63.854 14.986 1 27.41 ? C11 ERT 600 A 1 HETATM 3 C C18 ERT . . . D 3 23.601 64.69 13.875 1 24.99 ? C18 ERT 600 A 1 HETATM 4 C C17 ERT . . . D 3 23.018 66.023 14.09 1 24.63 ? C17 ERT 600 A 1 HETATM 5 C C6 ERT . . . D 3 22.597 66.391 15.359 1 26.21 ? C6 ERT 600 A 1 HETATM 6 O O6 ERT . . . D 3 22.064 67.589 15.562 1 25.49 ? O6 ERT 600 A 1 HETATM 7 C C5 ERT . . . D 3 22.871 66.924 12.932 1 24.1 ? C5 ERT 600 A 1 HETATM 8 O O5 ERT . . . D 3 22.371 68.07 13.081 1 23.27 ? O5 ERT 600 A 1 HETATM 9 C C16 ERT . . . D 3 23.346 66.425 11.604 1 24.36 ? C16 ERT 600 A 1 HETATM 10 C C4 ERT . . . D 3 23.245 67.217 10.468 1 24.87 ? C4 ERT 600 A 1 HETATM 11 O O4 ERT . . . D 3 22.789 68.461 10.563 1 25.27 ? O4 ERT 600 A 1 HETATM 12 C C40 ERT . . . D 3 21.563 68.965 10.106 1 25.94 ? C40 ERT 600 A 1 HETATM 13 C C3 ERT . . . D 3 23.699 66.75 9.246 1 24.54 ? C3 ERT 600 A 1 HETATM 14 C C2 ERT . . . D 3 24.247 65.481 9.146 1 23.15 ? C2 ERT 600 A 1 HETATM 15 C C15 ERT . . . D 3 23.891 65.15 11.493 1 24.42 ? C15 ERT 600 A 1 HETATM 16 C C1 ERT . . . D 3 24.336 64.677 10.255 1 22.64 ? C1 ERT 600 A 1 HETATM 17 C C12 ERT . . . D 3 24.018 64.308 12.593 1 24.59 ? C12 ERT 600 A 1 HETATM 18 O O12 ERT . . . D 3 24.53 63.178 12.366 1 23.95 ? O12 ERT 600 A 1 HETATM 19 C C19 ERT . . . D 3 23.261 64.237 16.248 1 28.01 ? C19 ERT 600 A 1 HETATM 20 C C10 ERT . . . D 3 23.508 63.365 17.444 1 29.04 ? C10 ERT 600 A 1 HETATM 21 C C21 ERT . . . D 3 24.949 62.832 17.605 1 31.95 ? C21 ERT 600 A 1 HETATM 22 O O13 ERT . . . D 3 25.896 63.782 18.09 1 33.71 ? O13 ERT 600 A 1 HETATM 23 O O10 ERT . . . D 3 25.406 61.503 17.348 1 35.71 ? O10 ERT 600 A 1 HETATM 24 C C22 ERT . . . D 3 26.833 61.372 17.378 1 36.27 ? C22 ERT 600 A 1 HETATM 25 C C20 ERT . . . D 3 22.747 65.528 16.439 1 27.32 ? C20 ERT 600 A 1 HETATM 26 C C7 ERT . . . D 3 22.249 65.957 17.781 1 27.23 ? C7 ERT 600 A 1 HETATM 27 C C8 ERT . . . D 3 22.951 65.255 18.932 1 28.62 ? C8 ERT 600 A 1 HETATM 28 C C9 ERT . . . D 3 22.873 63.736 18.78 1 29.08 ? C9 ERT 600 A 1 HETATM 29 C C13 ERT . . . D 3 23.548 63.187 20.04 1 29.82 ? C13 ERT 600 A 1 HETATM 30 C C14 ERT . . . D 3 23.733 61.685 20.081 1 30.88 ? C14 ERT 600 A 1 HETATM 31 O O9 ERT . . . D 3 21.529 63.292 18.759 1 30.69 ? O9 ERT 600 A 1 HETATM 32 O O7 ERT . . . D 3 20.864 65.534 17.824 1 24.6 ? O7 ERT 600 A 1 HETATM 33 C C1' ERT . . . D 3 20.026 66.221 18.757 1 22.19 ? C1' ERT 600 A 1 HETATM 34 C C2' ERT . . . D 3 19.399 67.407 18.045 1 20.15 ? C2' ERT 600 A 1 HETATM 35 C C3' ERT . . . D 3 18.356 66.916 17.057 1 21.35 ? C3' ERT 600 A 1 HETATM 36 N N3' ERT . . . D 3 17.924 68.15 16.367 1 22.67 ? N3' ERT 600 A 1 HETATM 37 C C7' ERT . . . D 3 18.464 68.398 15.239 1 22.14 ? C7' ERT 600 A 1 HETATM 38 C C8' ERT . . . D 3 17.104 68.99 16.855 1 21.39 ? C8' ERT 600 A 1 HETATM 39 C C4' ERT . . . D 3 17.287 66.101 17.793 1 20.43 ? C4' ERT 600 A 1 HETATM 40 O O4' ERT . . . D 3 16.627 66.817 18.834 1 20.6 ? O4' ERT 600 A 1 HETATM 41 C C5' ERT . . . D 3 18.031 64.905 18.406 1 20.85 ? C5' ERT 600 A 1 HETATM 42 O O5' ERT . . . D 3 19.044 65.33 19.312 1 20.78 ? O5' ERT 600 A 1 HETATM 43 C C6' ERT . . . D 3 17.143 63.947 19.179 1 20.56 ? C6' ERT 600 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #