data_1TWQ # _model_server_result.job_id TpZKMSdxSpa9abYjR704Yw _model_server_result.datetime_utc '2024-10-18 22:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1twq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1TWQ # _exptl.entry_id 1TWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.27 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-beta-muramic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TWQ _cell.length_a 104.511 _cell.length_b 104.511 _cell.length_c 42.05 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TWQ _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 178 1_555 A SG CYS 124 A CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 18 A CYS 194 1_555 A SG CYS 62 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 38 A CYS 214 1_555 A SG CYS 44 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B C ALA 1 P ALA 996 1_555 B N GMA 2 P GMA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 B N ALA 1 P ALA 996 1_555 D C10 AMU . P AMU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 B C GMA 2 P GMA 997 1_555 B N LYS 3 P LYS 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C LYS 3 P LYS 998 1_555 B N NH2 4 P NH2 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? metalc ? metalc1 A N VAL 1 A VAL 177 1_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 A O VAL 1 A VAL 177 1_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc3 A OD2 ASP 120 A ASP 296 1_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A NE2 HIS 162 A HIS 338 6_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 C NI NI . A NI 900 1_555 E O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc6 C NI NI . A NI 900 1_555 E O HOH . A HOH 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C11 H19 N O8' _chem_comp.formula_weight 293.27 _chem_comp.id AMU _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-beta-muramic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'N-acetyl-muramic acid;BETA-N-ACETYLMURAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AMU sing 13 n n C1 O1 AMU sing 14 n n C1 O5 AMU sing 15 n n C1 H1 AMU sing 16 n n C2 C3 AMU sing 17 n n C2 N2 AMU sing 18 n n C2 H2 AMU sing 19 n n C3 C4 AMU sing 20 n n C3 O3 AMU sing 21 n n C3 H3 AMU sing 22 n n C4 C5 AMU sing 23 n n C4 O4 AMU sing 24 n n C4 H4 AMU sing 25 n n C5 C6 AMU sing 26 n n C5 O5 AMU sing 27 n n C5 H5 AMU sing 28 n n C6 O6 AMU sing 29 n n C6 H61 AMU sing 30 n n C6 H62 AMU sing 31 n n C7 C8 AMU sing 32 n n C7 O7 AMU doub 33 n n C7 N2 AMU sing 34 n n C8 H81 AMU sing 35 n n C8 H82 AMU sing 36 n n C8 H83 AMU sing 37 n n C9 C10 AMU sing 38 n n C9 C11 AMU sing 39 n n C9 O3 AMU sing 40 n n C9 H9 AMU sing 41 n n C10 O10 AMU doub 42 n n C10 O11 AMU sing 43 n n C11 H111 AMU sing 44 n n C11 H112 AMU sing 45 n n C11 H113 AMU sing 46 n n O1 HO1 AMU sing 47 n n O4 HO4 AMU sing 48 n n O6 HO6 AMU sing 49 n n O11 HO11 AMU sing 50 n n N2 HN2 AMU sing 51 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version AMU b-D-GlcpNAc3 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 AMU MurNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1TWQ _atom_sites.fract_transf_matrix[1][1] 0.009568 _atom_sites.fract_transf_matrix[1][2] 0.005524 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 900 900 NI NI . D 4 AMU P 1 1001 995 AMU AMU . E 5 HOH A 1 1001 25 HOH HOH . E 5 HOH A 2 1002 6 HOH HOH . E 5 HOH A 3 1003 1 HOH HOH . E 5 HOH A 4 1004 28 HOH HOH . E 5 HOH A 5 1005 38 HOH HOH . E 5 HOH A 6 1006 2 HOH HOH . E 5 HOH A 7 1007 7 HOH HOH . E 5 HOH A 8 1008 37 HOH HOH . E 5 HOH A 9 1009 19 HOH HOH . E 5 HOH A 10 1010 11 HOH HOH . E 5 HOH A 11 1011 22 HOH HOH . E 5 HOH A 12 1012 12 HOH HOH . E 5 HOH A 13 1013 31 HOH HOH . E 5 HOH A 14 1014 44 HOH HOH . E 5 HOH A 15 1015 48 HOH HOH . E 5 HOH A 16 1016 20 HOH HOH . E 5 HOH A 17 1017 24 HOH HOH . E 5 HOH A 18 1018 13 HOH HOH . E 5 HOH A 19 1019 36 HOH HOH . E 5 HOH A 20 1020 10 HOH HOH . E 5 HOH A 21 1021 9 HOH HOH . E 5 HOH A 22 1022 16 HOH HOH . E 5 HOH A 23 1023 8 HOH HOH . E 5 HOH A 24 1024 3 HOH HOH . E 5 HOH A 25 1025 32 HOH HOH . E 5 HOH A 26 1026 26 HOH HOH . E 5 HOH A 27 1027 14 HOH HOH . E 5 HOH A 28 1028 18 HOH HOH . E 5 HOH A 29 1029 21 HOH HOH . E 5 HOH A 30 1030 41 HOH HOH . E 5 HOH A 31 1031 35 HOH HOH . E 5 HOH A 32 1032 5 HOH HOH . E 5 HOH A 33 1033 33 HOH HOH . E 5 HOH A 34 1034 45 HOH HOH . E 5 HOH A 35 1035 30 HOH HOH . E 5 HOH A 36 1036 17 HOH HOH . E 5 HOH A 37 1037 47 HOH HOH . E 5 HOH A 38 1038 39 HOH HOH . E 5 HOH A 39 1039 29 HOH HOH . E 5 HOH A 40 1040 27 HOH HOH . E 5 HOH A 41 1041 15 HOH HOH . E 5 HOH A 42 1042 43 HOH HOH . E 5 HOH A 43 1043 42 HOH HOH . E 5 HOH A 44 1044 34 HOH HOH . E 5 HOH A 45 1045 46 HOH HOH . E 5 HOH A 46 1046 23 HOH HOH . E 5 HOH A 47 1047 4 HOH HOH . F 5 HOH P 1 1101 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AMU . . . D 4 -13.985 69.969 -1.455 0.6 26.29 ? C1 AMU 1001 P 1 HETATM 2 C C2 AMU . . . D 4 -13.618 68.654 -0.734 0.6 25.75 ? C2 AMU 1001 P 1 HETATM 3 C C3 AMU . . . D 4 -13.846 68.819 0.822 0.6 26.03 ? C3 AMU 1001 P 1 HETATM 4 C C4 AMU . . . D 4 -12.974 69.967 1.329 0.6 27.28 ? C4 AMU 1001 P 1 HETATM 5 C C5 AMU . . . D 4 -13.274 71.277 0.56 0.6 27.77 ? C5 AMU 1001 P 1 HETATM 6 C C6 AMU . . . D 4 -12.385 72.464 0.958 0.6 28.04 ? C6 AMU 1001 P 1 HETATM 7 C C7 AMU . . . D 4 -14.015 66.325 -1.62 0.6 23.48 ? C7 AMU 1001 P 1 HETATM 8 C C8 AMU . . . D 4 -15.09 65.346 -2.099 0.6 21.69 ? C8 AMU 1001 P 1 HETATM 9 C C9 AMU . . . D 4 -14.401 66.587 1.967 0.6 24.84 ? C9 AMU 1001 P 1 HETATM 10 C C10 AMU . . . D 4 -13.647 65.329 2.411 0.6 24.36 ? C10 AMU 1001 P 1 HETATM 11 C C11 AMU . . . D 4 -15.279 67.161 3.092 0.6 21.21 ? C11 AMU 1001 P 1 HETATM 12 O O1 AMU . . . D 4 -15.383 70.227 -1.357 0.6 23.92 ? O1 AMU 1001 P 1 HETATM 13 O O3 AMU . . . D 4 -13.45 67.601 1.527 0.6 26.49 ? O3 AMU 1001 P 1 HETATM 14 O O4 AMU . . . D 4 -13.338 70.123 2.704 0.6 26.63 ? O4 AMU 1001 P 1 HETATM 15 O O5 AMU . . . D 4 -13.16 71.05 -0.881 0.6 27.82 ? O5 AMU 1001 P 1 HETATM 16 O O6 AMU . . . D 4 -11.14 72.057 1.512 0.6 30.33 ? O6 AMU 1001 P 1 HETATM 17 O O7 AMU . . . D 4 -12.827 65.978 -1.608 0.6 20.38 ? O7 AMU 1001 P 1 HETATM 18 O O10 AMU . . . D 4 -14.235 64.28 2.714 0.6 25.6 ? O10 AMU 1001 P 1 HETATM 19 N N2 AMU . . . D 4 -14.437 67.538 -1.229 0.6 24.08 ? N2 AMU 1001 P 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #