data_1TWQ # _model_server_result.job_id TUA0naEzwT3ddKmJL0rthg _model_server_result.datetime_utc '2024-10-18 22:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1twq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 1TWQ # _exptl.entry_id 1TWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TWQ _cell.length_a 104.511 _cell.length_b 104.511 _cell.length_c 42.05 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TWQ _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 178 1_555 A SG CYS 124 A CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 18 A CYS 194 1_555 A SG CYS 62 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 38 A CYS 214 1_555 A SG CYS 44 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B C ALA 1 P ALA 996 1_555 B N GMA 2 P GMA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale2 B N ALA 1 P ALA 996 1_555 D C10 AMU . P AMU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 B C GMA 2 P GMA 997 1_555 B N LYS 3 P LYS 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C LYS 3 P LYS 998 1_555 B N NH2 4 P NH2 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? metalc ? metalc1 A N VAL 1 A VAL 177 1_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 A O VAL 1 A VAL 177 1_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc3 A OD2 ASP 120 A ASP 296 1_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 A NE2 HIS 162 A HIS 338 6_555 C NI NI . A NI 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 C NI NI . A NI 900 1_555 E O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc6 C NI NI . A NI 900 1_555 E O HOH . A HOH 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1TWQ _atom_sites.fract_transf_matrix[1][1] 0.009568 _atom_sites.fract_transf_matrix[1][2] 0.005524 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 900 900 NI NI . D 4 AMU P 1 1001 995 AMU AMU . E 5 HOH A 1 1001 25 HOH HOH . E 5 HOH A 2 1002 6 HOH HOH . E 5 HOH A 3 1003 1 HOH HOH . E 5 HOH A 4 1004 28 HOH HOH . E 5 HOH A 5 1005 38 HOH HOH . E 5 HOH A 6 1006 2 HOH HOH . E 5 HOH A 7 1007 7 HOH HOH . E 5 HOH A 8 1008 37 HOH HOH . E 5 HOH A 9 1009 19 HOH HOH . E 5 HOH A 10 1010 11 HOH HOH . E 5 HOH A 11 1011 22 HOH HOH . E 5 HOH A 12 1012 12 HOH HOH . E 5 HOH A 13 1013 31 HOH HOH . E 5 HOH A 14 1014 44 HOH HOH . E 5 HOH A 15 1015 48 HOH HOH . E 5 HOH A 16 1016 20 HOH HOH . E 5 HOH A 17 1017 24 HOH HOH . E 5 HOH A 18 1018 13 HOH HOH . E 5 HOH A 19 1019 36 HOH HOH . E 5 HOH A 20 1020 10 HOH HOH . E 5 HOH A 21 1021 9 HOH HOH . E 5 HOH A 22 1022 16 HOH HOH . E 5 HOH A 23 1023 8 HOH HOH . E 5 HOH A 24 1024 3 HOH HOH . E 5 HOH A 25 1025 32 HOH HOH . E 5 HOH A 26 1026 26 HOH HOH . E 5 HOH A 27 1027 14 HOH HOH . E 5 HOH A 28 1028 18 HOH HOH . E 5 HOH A 29 1029 21 HOH HOH . E 5 HOH A 30 1030 41 HOH HOH . E 5 HOH A 31 1031 35 HOH HOH . E 5 HOH A 32 1032 5 HOH HOH . E 5 HOH A 33 1033 33 HOH HOH . E 5 HOH A 34 1034 45 HOH HOH . E 5 HOH A 35 1035 30 HOH HOH . E 5 HOH A 36 1036 17 HOH HOH . E 5 HOH A 37 1037 47 HOH HOH . E 5 HOH A 38 1038 39 HOH HOH . E 5 HOH A 39 1039 29 HOH HOH . E 5 HOH A 40 1040 27 HOH HOH . E 5 HOH A 41 1041 15 HOH HOH . E 5 HOH A 42 1042 43 HOH HOH . E 5 HOH A 43 1043 42 HOH HOH . E 5 HOH A 44 1044 34 HOH HOH . E 5 HOH A 45 1045 46 HOH HOH . E 5 HOH A 46 1046 23 HOH HOH . E 5 HOH A 47 1047 4 HOH HOH . F 5 HOH P 1 1101 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -30.283 _atom_site.Cartn_y 45.236 _atom_site.Cartn_z 6.343 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 900 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #