data_1TWW # _model_server_result.job_id '_tCZAnvyyT-0kJj3cUG7tA' _model_server_result.datetime_utc '2024-11-27 21:02:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":282}' # _entry.id 1TWW # _exptl.entry_id 1TWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.123 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1TWW _cell.length_a 98.239 _cell.length_b 98.239 _cell.length_c 262.61 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1,2 B,H,I,J,K,L,N 2 1 B,H,I,J,K,L,N 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -196.478 170.154939 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -147.3585 85.07747 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N # _chem_comp.formula 'C7 H9 N5 O8 P2' _chem_comp.formula_weight 353.123 _chem_comp.id HH2 _chem_comp.mon_nstd_flag . _chem_comp.name 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[PTERIN-6-YL METHANYL]-PHOSPHONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HH2 doub 129 n y N1 C9 HH2 sing 130 n y C2 C3 HH2 sing 131 n y C2 C11 HH2 sing 132 n n C3 N4 HH2 doub 133 n y C3 H31 HH2 sing 134 n n N4 C10 HH2 sing 135 n y N5 C6 HH2 doub 136 n y N5 C10 HH2 sing 137 n y C6 N6 HH2 sing 138 n n C6 N7 HH2 sing 139 n y N6 HN61 HH2 sing 140 n n N6 HN62 HH2 sing 141 n n N7 C8 HH2 sing 142 n y N7 HN7 HH2 sing 143 n n C8 O8 HH2 doub 144 n n C8 C9 HH2 sing 145 n y C9 C10 HH2 doub 146 n y C11 O4 HH2 sing 147 n n C11 H111 HH2 sing 148 n n C11 H112 HH2 sing 149 n n O4 P1 HH2 sing 150 n n P1 O1P HH2 doub 151 n n P1 O2P HH2 sing 152 n n P1 O3P HH2 sing 153 n n O2P HOP2 HH2 sing 154 n n O3P P2 HH2 sing 155 n n P2 O4P HH2 doub 156 n n P2 O5P HH2 sing 157 n n P2 O6P HH2 sing 158 n n O5P HOP5 HH2 sing 159 n n O6P HOP6 HH2 sing 160 n n # _atom_sites.entry_id 1TWW _atom_sites.fract_transf_matrix[1][1] 0.010179 _atom_sites.fract_transf_matrix[1][2] 0.005877 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 278 2 SO4 SO4 . D 2 SO4 A 1 279 3 SO4 SO4 . E 2 SO4 A 1 280 4 SO4 SO4 . F 2 SO4 A 1 281 7 SO4 SO4 . G 3 HH2 A 1 282 1 HH2 DPP . H 2 SO4 B 1 278 1 SO4 SO4 . I 2 SO4 B 1 279 5 SO4 SO4 . J 2 SO4 B 1 280 6 SO4 SO4 . K 2 SO4 B 1 281 8 SO4 SO4 . L 3 HH2 B 1 282 2 HH2 DPP . M 4 HOH A 1 283 1 HOH WAT . M 4 HOH A 2 284 4 HOH WAT . M 4 HOH A 3 285 5 HOH WAT . M 4 HOH A 4 286 6 HOH WAT . M 4 HOH A 5 287 9 HOH WAT . M 4 HOH A 6 288 11 HOH WAT . M 4 HOH A 7 289 14 HOH WAT . M 4 HOH A 8 290 17 HOH WAT . M 4 HOH A 9 291 21 HOH WAT . M 4 HOH A 10 292 22 HOH WAT . M 4 HOH A 11 293 23 HOH WAT . M 4 HOH A 12 294 25 HOH WAT . M 4 HOH A 13 295 27 HOH WAT . M 4 HOH A 14 296 34 HOH WAT . M 4 HOH A 15 297 35 HOH WAT . M 4 HOH A 16 298 36 HOH WAT . M 4 HOH A 17 299 38 HOH WAT . M 4 HOH A 18 300 39 HOH WAT . M 4 HOH A 19 301 41 HOH WAT . M 4 HOH A 20 302 45 HOH WAT . M 4 HOH A 21 303 46 HOH WAT . M 4 HOH A 22 304 53 HOH WAT . M 4 HOH A 23 305 54 HOH WAT . M 4 HOH A 24 306 55 HOH WAT . M 4 HOH A 25 307 56 HOH WAT . M 4 HOH A 26 308 57 HOH WAT . M 4 HOH A 27 309 58 HOH WAT . M 4 HOH A 28 310 63 HOH WAT . M 4 HOH A 29 311 64 HOH WAT . M 4 HOH A 30 312 68 HOH WAT . M 4 HOH A 31 313 73 HOH WAT . M 4 HOH A 32 314 74 HOH WAT . M 4 HOH A 33 315 76 HOH WAT . M 4 HOH A 34 316 79 HOH WAT . M 4 HOH A 35 317 80 HOH WAT . M 4 HOH A 36 318 82 HOH WAT . M 4 HOH A 37 319 84 HOH WAT . M 4 HOH A 38 320 85 HOH WAT . M 4 HOH A 39 321 86 HOH WAT . M 4 HOH A 40 322 87 HOH WAT . M 4 HOH A 41 323 88 HOH WAT . M 4 HOH A 42 324 89 HOH WAT . M 4 HOH A 43 325 92 HOH WAT . M 4 HOH A 44 326 93 HOH WAT . M 4 HOH A 45 327 95 HOH WAT . M 4 HOH A 46 328 98 HOH WAT . M 4 HOH A 47 329 101 HOH WAT . M 4 HOH A 48 330 103 HOH WAT . M 4 HOH A 49 331 104 HOH WAT . M 4 HOH A 50 332 105 HOH WAT . M 4 HOH A 51 333 107 HOH WAT . M 4 HOH A 52 334 108 HOH WAT . M 4 HOH A 53 335 109 HOH WAT . M 4 HOH A 54 336 110 HOH WAT . M 4 HOH A 55 337 111 HOH WAT . M 4 HOH A 56 338 114 HOH WAT . M 4 HOH A 57 339 115 HOH WAT . M 4 HOH A 58 340 116 HOH WAT . M 4 HOH A 59 341 117 HOH WAT . M 4 HOH A 60 342 119 HOH WAT . M 4 HOH A 61 343 121 HOH WAT . M 4 HOH A 62 344 123 HOH WAT . M 4 HOH A 63 345 124 HOH WAT . M 4 HOH A 64 346 131 HOH WAT . M 4 HOH A 65 347 135 HOH WAT . M 4 HOH A 66 348 137 HOH WAT . M 4 HOH A 67 349 138 HOH WAT . M 4 HOH A 68 350 141 HOH WAT . M 4 HOH A 69 351 142 HOH WAT . M 4 HOH A 70 352 143 HOH WAT . M 4 HOH A 71 353 145 HOH WAT . M 4 HOH A 72 354 146 HOH WAT . M 4 HOH A 73 355 147 HOH WAT . M 4 HOH A 74 356 148 HOH WAT . M 4 HOH A 75 357 150 HOH WAT . M 4 HOH A 76 358 152 HOH WAT . M 4 HOH A 77 359 153 HOH WAT . M 4 HOH A 78 360 154 HOH WAT . M 4 HOH A 79 361 156 HOH WAT . M 4 HOH A 80 362 157 HOH WAT . M 4 HOH A 81 363 158 HOH WAT . M 4 HOH A 82 364 159 HOH WAT . M 4 HOH A 83 365 162 HOH WAT . N 4 HOH B 1 283 2 HOH WAT . N 4 HOH B 2 284 3 HOH WAT . N 4 HOH B 3 285 7 HOH WAT . N 4 HOH B 4 286 8 HOH WAT . N 4 HOH B 5 287 10 HOH WAT . N 4 HOH B 6 288 12 HOH WAT . N 4 HOH B 7 289 13 HOH WAT . N 4 HOH B 8 290 15 HOH WAT . N 4 HOH B 9 291 16 HOH WAT . N 4 HOH B 10 292 18 HOH WAT . N 4 HOH B 11 293 19 HOH WAT . N 4 HOH B 12 294 20 HOH WAT . N 4 HOH B 13 295 24 HOH WAT . N 4 HOH B 14 296 26 HOH WAT . N 4 HOH B 15 297 28 HOH WAT . N 4 HOH B 16 298 29 HOH WAT . N 4 HOH B 17 299 30 HOH WAT . N 4 HOH B 18 300 31 HOH WAT . N 4 HOH B 19 301 32 HOH WAT . N 4 HOH B 20 302 33 HOH WAT . N 4 HOH B 21 303 37 HOH WAT . N 4 HOH B 22 304 40 HOH WAT . N 4 HOH B 23 305 42 HOH WAT . N 4 HOH B 24 306 43 HOH WAT . N 4 HOH B 25 307 44 HOH WAT . N 4 HOH B 26 308 47 HOH WAT . N 4 HOH B 27 309 48 HOH WAT . N 4 HOH B 28 310 49 HOH WAT . N 4 HOH B 29 311 50 HOH WAT . N 4 HOH B 30 312 51 HOH WAT . N 4 HOH B 31 313 52 HOH WAT . N 4 HOH B 32 314 59 HOH WAT . N 4 HOH B 33 315 60 HOH WAT . N 4 HOH B 34 316 61 HOH WAT . N 4 HOH B 35 317 62 HOH WAT . N 4 HOH B 36 318 65 HOH WAT . N 4 HOH B 37 319 66 HOH WAT . N 4 HOH B 38 320 67 HOH WAT . N 4 HOH B 39 321 69 HOH WAT . N 4 HOH B 40 322 70 HOH WAT . N 4 HOH B 41 323 71 HOH WAT . N 4 HOH B 42 324 72 HOH WAT . N 4 HOH B 43 325 75 HOH WAT . N 4 HOH B 44 326 77 HOH WAT . N 4 HOH B 45 327 78 HOH WAT . N 4 HOH B 46 328 81 HOH WAT . N 4 HOH B 47 329 83 HOH WAT . N 4 HOH B 48 330 90 HOH WAT . N 4 HOH B 49 331 91 HOH WAT . N 4 HOH B 50 332 94 HOH WAT . N 4 HOH B 51 333 96 HOH WAT . N 4 HOH B 52 334 97 HOH WAT . N 4 HOH B 53 335 99 HOH WAT . N 4 HOH B 54 336 100 HOH WAT . N 4 HOH B 55 337 102 HOH WAT . N 4 HOH B 56 338 106 HOH WAT . N 4 HOH B 57 339 112 HOH WAT . N 4 HOH B 58 340 113 HOH WAT . N 4 HOH B 59 341 118 HOH WAT . N 4 HOH B 60 342 120 HOH WAT . N 4 HOH B 61 343 122 HOH WAT . N 4 HOH B 62 344 125 HOH WAT . N 4 HOH B 63 345 126 HOH WAT . N 4 HOH B 64 346 127 HOH WAT . N 4 HOH B 65 347 128 HOH WAT . N 4 HOH B 66 348 129 HOH WAT . N 4 HOH B 67 349 130 HOH WAT . N 4 HOH B 68 350 132 HOH WAT . N 4 HOH B 69 351 133 HOH WAT . N 4 HOH B 70 352 134 HOH WAT . N 4 HOH B 71 353 136 HOH WAT . N 4 HOH B 72 354 139 HOH WAT . N 4 HOH B 73 355 140 HOH WAT . N 4 HOH B 74 356 144 HOH WAT . N 4 HOH B 75 357 149 HOH WAT . N 4 HOH B 76 358 151 HOH WAT . N 4 HOH B 77 359 155 HOH WAT . N 4 HOH B 78 360 160 HOH WAT . N 4 HOH B 79 361 161 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HH2 . . . G 3 -78.98 86.799 93.003 1 90.53 ? N1 HH2 282 A 1 HETATM 2 C C2 HH2 . . . G 3 -78.189 87.037 94.087 1 92.44 ? C2 HH2 282 A 1 HETATM 3 C C3 HH2 . . . G 3 -77.098 86.218 94.4 1 88.65 ? C3 HH2 282 A 1 HETATM 4 N N4 HH2 . . . G 3 -76.815 85.177 93.62 1 86.63 ? N4 HH2 282 A 1 HETATM 5 N N5 HH2 . . . G 3 -77.306 83.84 91.745 1 84.16 ? N5 HH2 282 A 1 HETATM 6 C C6 HH2 . . . G 3 -78.069 83.611 90.653 1 85.25 ? C6 HH2 282 A 1 HETATM 7 N N6 HH2 . . . G 3 -77.785 82.56 89.873 1 85.05 ? N6 HH2 282 A 1 HETATM 8 N N7 HH2 . . . G 3 -79.144 84.404 90.334 1 85.98 ? N7 HH2 282 A 1 HETATM 9 C C8 HH2 . . . G 3 -79.478 85.476 91.106 1 85.04 ? C8 HH2 282 A 1 HETATM 10 O O8 HH2 . . . G 3 -80.515 86.232 90.798 1 79.17 ? O8 HH2 282 A 1 HETATM 11 C C9 HH2 . . . G 3 -78.687 85.747 92.218 1 87.27 ? C9 HH2 282 A 1 HETATM 12 C C10 HH2 . . . G 3 -77.591 84.91 92.536 1 86.68 ? C10 HH2 282 A 1 HETATM 13 C C11 HH2 . . . G 3 -78.523 88.232 94.938 1 94.68 ? C11 HH2 282 A 1 HETATM 14 O O4 HH2 . . . G 3 -77.772 88.188 96.141 1 95.44 ? O4 HH2 282 A 1 HETATM 15 P P1 HH2 . . . G 3 -78.187 89.039 97.46 1 96.97 ? P1 HH2 282 A 1 HETATM 16 O O1P HH2 . . . G 3 -79.429 89.917 97.206 1 95.78 ? O1P HH2 282 A 1 HETATM 17 O O2P HH2 . . . G 3 -76.858 89.621 97.992 1 96.07 ? O2P HH2 282 A 1 HETATM 18 O O3P HH2 . . . G 3 -78.626 87.959 98.557 1 88.78 ? O3P HH2 282 A 1 HETATM 19 P P2 HH2 . . . G 3 -79.422 86.653 98.197 1 83.97 ? P2 HH2 282 A 1 HETATM 20 O O4P HH2 . . . G 3 -80.337 87.067 97.078 1 85.86 ? O4P HH2 282 A 1 HETATM 21 O O5P HH2 . . . G 3 -80.157 86.294 99.481 1 85.8 ? O5P HH2 282 A 1 HETATM 22 O O6P HH2 . . . G 3 -78.287 85.77 97.8 1 84.06 ? O6P HH2 282 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #