data_1TYQ # _model_server_result.job_id m53dr0v2feoVZbd249ucfw _model_server_result.datetime_utc '2024-10-18 14:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1002}' # _entry.id 1TYQ # _exptl.entry_id 1TYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TYQ _cell.length_a 111.368 _cell.length_b 129.392 _cell.length_c 199.692 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H CA CA . A CA 500 1_555 I O2G ATP . A ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc2 H CA CA . A CA 500 1_555 I O1B ATP . A ATP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc3 J CA CA . B CA 501 1_555 K O1B ATP . B ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc4 J CA CA . B CA 501 1_555 K O2G ATP . B ATP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc5 J CA CA . B CA 501 1_555 M O HOH . B HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1TYQ _atom_sites.fract_transf_matrix[1][1] 0.008979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 CA A 1 500 500 CA CA . I 9 ATP A 1 1001 1 ATP ATP . J 8 CA B 1 501 501 CA CA . K 9 ATP B 1 1002 2 ATP ATP . L 10 HOH A 1 1002 5 HOH TIP . L 10 HOH A 2 1003 7 HOH TIP . L 10 HOH A 3 1004 39 HOH TIP . L 10 HOH A 4 1005 45 HOH TIP . L 10 HOH A 5 1006 53 HOH TIP . L 10 HOH A 6 1007 55 HOH TIP . L 10 HOH A 7 1008 57 HOH TIP . L 10 HOH A 8 1009 65 HOH TIP . L 10 HOH A 9 1010 76 HOH TIP . L 10 HOH A 10 1011 96 HOH TIP . L 10 HOH A 11 1012 100 HOH TIP . L 10 HOH A 12 1013 103 HOH TIP . L 10 HOH A 13 1014 117 HOH TIP . L 10 HOH A 14 1015 121 HOH TIP . L 10 HOH A 15 1016 123 HOH TIP . L 10 HOH A 16 1017 141 HOH TIP . L 10 HOH A 17 1018 142 HOH TIP . L 10 HOH A 18 1019 146 HOH TIP . L 10 HOH A 19 1020 153 HOH TIP . L 10 HOH A 20 1021 165 HOH TIP . L 10 HOH A 21 1022 166 HOH TIP . L 10 HOH A 22 1023 169 HOH TIP . M 10 HOH B 1 1003 28 HOH TIP . M 10 HOH B 2 1004 63 HOH TIP . M 10 HOH B 3 1005 67 HOH TIP . M 10 HOH B 4 1006 98 HOH TIP . M 10 HOH B 5 1007 101 HOH TIP . M 10 HOH B 6 1008 102 HOH TIP . M 10 HOH B 7 1009 114 HOH TIP . M 10 HOH B 8 1010 128 HOH TIP . M 10 HOH B 9 1011 138 HOH TIP . M 10 HOH B 10 1012 140 HOH TIP . M 10 HOH B 11 1013 162 HOH TIP . M 10 HOH B 12 1014 170 HOH TIP . M 10 HOH B 13 1015 181 HOH TIP . N 10 HOH C 1 373 4 HOH TIP . N 10 HOH C 2 374 6 HOH TIP . N 10 HOH C 3 375 13 HOH TIP . N 10 HOH C 4 376 14 HOH TIP . N 10 HOH C 5 377 15 HOH TIP . N 10 HOH C 6 378 16 HOH TIP . N 10 HOH C 7 379 17 HOH TIP . N 10 HOH C 8 380 20 HOH TIP . N 10 HOH C 9 381 29 HOH TIP . N 10 HOH C 10 382 32 HOH TIP . N 10 HOH C 11 383 34 HOH TIP . N 10 HOH C 12 384 35 HOH TIP . N 10 HOH C 13 385 38 HOH TIP . N 10 HOH C 14 386 42 HOH TIP . N 10 HOH C 15 387 44 HOH TIP . N 10 HOH C 16 388 52 HOH TIP . N 10 HOH C 17 389 54 HOH TIP . N 10 HOH C 18 390 58 HOH TIP . N 10 HOH C 19 391 59 HOH TIP . N 10 HOH C 20 392 60 HOH TIP . N 10 HOH C 21 393 64 HOH TIP . N 10 HOH C 22 394 69 HOH TIP . N 10 HOH C 23 395 71 HOH TIP . N 10 HOH C 24 396 73 HOH TIP . N 10 HOH C 25 397 74 HOH TIP . N 10 HOH C 26 398 81 HOH TIP . N 10 HOH C 27 399 83 HOH TIP . N 10 HOH C 28 400 86 HOH TIP . N 10 HOH C 29 401 87 HOH TIP . N 10 HOH C 30 402 88 HOH TIP . N 10 HOH C 31 403 90 HOH TIP . N 10 HOH C 32 404 92 HOH TIP . N 10 HOH C 33 405 95 HOH TIP . N 10 HOH C 34 406 104 HOH TIP . N 10 HOH C 35 407 105 HOH TIP . N 10 HOH C 36 408 107 HOH TIP . N 10 HOH C 37 409 108 HOH TIP . N 10 HOH C 38 410 115 HOH TIP . N 10 HOH C 39 411 118 HOH TIP . N 10 HOH C 40 412 122 HOH TIP . N 10 HOH C 41 413 124 HOH TIP . N 10 HOH C 42 414 129 HOH TIP . N 10 HOH C 43 415 131 HOH TIP . N 10 HOH C 44 416 133 HOH TIP . N 10 HOH C 45 417 135 HOH TIP . N 10 HOH C 46 418 136 HOH TIP . N 10 HOH C 47 419 139 HOH TIP . N 10 HOH C 48 420 144 HOH TIP . N 10 HOH C 49 421 147 HOH TIP . N 10 HOH C 50 422 148 HOH TIP . N 10 HOH C 51 423 152 HOH TIP . N 10 HOH C 52 424 154 HOH TIP . N 10 HOH C 53 425 156 HOH TIP . N 10 HOH C 54 426 163 HOH TIP . N 10 HOH C 55 427 164 HOH TIP . N 10 HOH C 56 428 168 HOH TIP . N 10 HOH C 57 429 172 HOH TIP . N 10 HOH C 58 430 175 HOH TIP . N 10 HOH C 59 431 180 HOH TIP . O 10 HOH D 1 301 9 HOH TIP . O 10 HOH D 2 302 12 HOH TIP . O 10 HOH D 3 303 21 HOH TIP . O 10 HOH D 4 304 22 HOH TIP . O 10 HOH D 5 305 26 HOH TIP . O 10 HOH D 6 306 27 HOH TIP . O 10 HOH D 7 307 30 HOH TIP . O 10 HOH D 8 308 31 HOH TIP . O 10 HOH D 9 309 33 HOH TIP . O 10 HOH D 10 310 36 HOH TIP . O 10 HOH D 11 311 37 HOH TIP . O 10 HOH D 12 312 41 HOH TIP . O 10 HOH D 13 313 43 HOH TIP . O 10 HOH D 14 314 46 HOH TIP . O 10 HOH D 15 315 48 HOH TIP . O 10 HOH D 16 316 49 HOH TIP . O 10 HOH D 17 317 56 HOH TIP . O 10 HOH D 18 318 62 HOH TIP . O 10 HOH D 19 319 78 HOH TIP . O 10 HOH D 20 320 80 HOH TIP . O 10 HOH D 21 321 82 HOH TIP . O 10 HOH D 22 322 84 HOH TIP . O 10 HOH D 23 323 85 HOH TIP . O 10 HOH D 24 324 89 HOH TIP . O 10 HOH D 25 325 91 HOH TIP . O 10 HOH D 26 326 93 HOH TIP . O 10 HOH D 27 327 97 HOH TIP . O 10 HOH D 28 328 106 HOH TIP . O 10 HOH D 29 329 109 HOH TIP . O 10 HOH D 30 330 120 HOH TIP . O 10 HOH D 31 331 125 HOH TIP . O 10 HOH D 32 332 126 HOH TIP . O 10 HOH D 33 333 130 HOH TIP . O 10 HOH D 34 334 134 HOH TIP . O 10 HOH D 35 335 143 HOH TIP . O 10 HOH D 36 336 151 HOH TIP . O 10 HOH D 37 337 161 HOH TIP . O 10 HOH D 38 338 173 HOH TIP . O 10 HOH D 39 339 176 HOH TIP . O 10 HOH D 40 340 177 HOH TIP . O 10 HOH D 41 341 178 HOH TIP . P 10 HOH E 1 179 167 HOH TIP . P 10 HOH E 2 180 174 HOH TIP . Q 10 HOH F 1 169 1 HOH TIP . Q 10 HOH F 2 170 2 HOH TIP . Q 10 HOH F 3 171 3 HOH TIP . Q 10 HOH F 4 172 8 HOH TIP . Q 10 HOH F 5 173 10 HOH TIP . Q 10 HOH F 6 174 11 HOH TIP . Q 10 HOH F 7 175 18 HOH TIP . Q 10 HOH F 8 176 19 HOH TIP . Q 10 HOH F 9 177 24 HOH TIP . Q 10 HOH F 10 178 25 HOH TIP . Q 10 HOH F 11 179 40 HOH TIP . Q 10 HOH F 12 180 47 HOH TIP . Q 10 HOH F 13 181 50 HOH TIP . Q 10 HOH F 14 182 51 HOH TIP . Q 10 HOH F 15 183 61 HOH TIP . Q 10 HOH F 16 184 66 HOH TIP . Q 10 HOH F 17 185 68 HOH TIP . Q 10 HOH F 18 186 70 HOH TIP . Q 10 HOH F 19 187 72 HOH TIP . Q 10 HOH F 20 188 77 HOH TIP . Q 10 HOH F 21 189 79 HOH TIP . Q 10 HOH F 22 190 94 HOH TIP . Q 10 HOH F 23 191 99 HOH TIP . Q 10 HOH F 24 192 111 HOH TIP . Q 10 HOH F 25 193 112 HOH TIP . Q 10 HOH F 26 194 113 HOH TIP . Q 10 HOH F 27 195 116 HOH TIP . Q 10 HOH F 28 196 127 HOH TIP . Q 10 HOH F 29 197 132 HOH TIP . Q 10 HOH F 30 198 137 HOH TIP . Q 10 HOH F 31 199 145 HOH TIP . Q 10 HOH F 32 200 150 HOH TIP . Q 10 HOH F 33 201 155 HOH TIP . Q 10 HOH F 34 202 158 HOH TIP . Q 10 HOH F 35 203 159 HOH TIP . Q 10 HOH F 36 204 160 HOH TIP . Q 10 HOH F 37 205 179 HOH TIP . R 10 HOH G 1 152 23 HOH TIP . R 10 HOH G 2 153 75 HOH TIP . R 10 HOH G 3 154 110 HOH TIP . R 10 HOH G 4 155 119 HOH TIP . R 10 HOH G 5 156 149 HOH TIP . R 10 HOH G 6 157 157 HOH TIP . R 10 HOH G 7 158 171 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 9 -22.022 31.583 25.485 1 74.5 ? PG ATP 1002 B 1 HETATM 2 O O1G ATP . . . K 9 -21.007 32.332 26.485 1 74.24 ? O1G ATP 1002 B 1 HETATM 3 O O2G ATP . . . K 9 -23.31 31.203 26.375 1 75.41 ? O2G ATP 1002 B 1 HETATM 4 O O3G ATP . . . K 9 -22.38 32.438 24.331 1 76.46 ? O3G ATP 1002 B 1 HETATM 5 P PB ATP . . . K 9 -22.057 28.784 25.179 1 72.93 ? PB ATP 1002 B 1 HETATM 6 O O1B ATP . . . K 9 -23.498 29.01 24.926 1 73.91 ? O1B ATP 1002 B 1 HETATM 7 O O2B ATP . . . K 9 -21.345 27.798 24.335 1 71.36 ? O2B ATP 1002 B 1 HETATM 8 O O3B ATP . . . K 9 -21.305 30.204 25.06 1 73.24 ? O3B ATP 1002 B 1 HETATM 9 P PA ATP . . . K 9 -22.674 27.263 27.474 1 67.97 ? PA ATP 1002 B 1 HETATM 10 O O1A ATP . . . K 9 -24.028 27.8 27.729 1 68.29 ? O1A ATP 1002 B 1 HETATM 11 O O2A ATP . . . K 9 -22.546 25.998 26.716 1 67.7 ? O2A ATP 1002 B 1 HETATM 12 O O3A ATP . . . K 9 -21.831 28.418 26.731 1 71.53 ? O3A ATP 1002 B 1 HETATM 13 O O5' ATP . . . K 9 -21.893 27.139 28.876 1 66.9 ? O5' ATP 1002 B 1 HETATM 14 C C5' ATP . . . K 9 -20.501 26.812 28.918 1 63.31 ? C5' ATP 1002 B 1 HETATM 15 C C4' ATP . . . K 9 -19.842 27.463 30.138 1 62.32 ? C4' ATP 1002 B 1 HETATM 16 O O4' ATP . . . K 9 -20.513 26.996 31.323 1 60.04 ? O4' ATP 1002 B 1 HETATM 17 C C3' ATP . . . K 9 -18.376 27.042 30.275 1 59.28 ? C3' ATP 1002 B 1 HETATM 18 O O3' ATP . . . K 9 -17.654 28.037 31.006 1 58.45 ? O3' ATP 1002 B 1 HETATM 19 C C2' ATP . . . K 9 -18.523 25.769 31.104 1 59.28 ? C2' ATP 1002 B 1 HETATM 20 O O2' ATP . . . K 9 -17.298 25.489 31.788 1 58.26 ? O2' ATP 1002 B 1 HETATM 21 C C1' ATP . . . K 9 -19.556 26.27 32.114 1 58.92 ? C1' ATP 1002 B 1 HETATM 22 N N9 ATP . . . K 9 -20.202 25.159 32.852 1 57.01 ? N9 ATP 1002 B 1 HETATM 23 C C8 ATP . . . K 9 -20.626 24.009 32.33 1 55.42 ? C8 ATP 1002 B 1 HETATM 24 N N7 ATP . . . K 9 -21.151 23.251 33.289 1 54.63 ? N7 ATP 1002 B 1 HETATM 25 C C5 ATP . . . K 9 -21.067 23.924 34.433 1 54.61 ? C5 ATP 1002 B 1 HETATM 26 C C6 ATP . . . K 9 -21.456 23.643 35.737 1 54.02 ? C6 ATP 1002 B 1 HETATM 27 N N6 ATP . . . K 9 -22.039 22.487 36.041 1 52.96 ? N6 ATP 1002 B 1 HETATM 28 N N1 ATP . . . K 9 -21.226 24.606 36.728 1 55.54 ? N1 ATP 1002 B 1 HETATM 29 C C2 ATP . . . K 9 -20.612 25.815 36.378 1 56.81 ? C2 ATP 1002 B 1 HETATM 30 N N3 ATP . . . K 9 -20.254 26.046 35.127 1 56.89 ? N3 ATP 1002 B 1 HETATM 31 C C4 ATP . . . K 9 -20.462 25.143 34.155 1 55.78 ? C4 ATP 1002 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #