data_1TYR # _model_server_result.job_id CZdSKVbln2gBGHwhgAkP1w _model_server_result.datetime_utc '2025-02-05 17:54:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tyr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":130}' # _entry.id 1TYR # _exptl.entry_id 1TYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TYR _cell.length_a 43.8 _cell.length_b 86.22 _cell.length_c 65.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 43.8 86.22 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 9CR doub 1 n n C15 C14 9CR sing 2 n n C15 O2 9CR sing 3 n n C14 C13 9CR doub 4 e n C13 C12 9CR sing 5 n n C13 C20 9CR sing 6 n n C12 C11 9CR doub 7 e n C11 C10 9CR sing 8 n n C18 C5 9CR sing 9 n n C10 C9 9CR doub 10 z n C9 C19 9CR sing 11 n n C9 C8 9CR sing 12 n n C8 C7 9CR doub 13 e n C5 C4 9CR sing 14 n n C5 C6 9CR doub 15 n n C4 C3 9CR sing 16 n n C7 C6 9CR sing 17 n n C6 C1 9CR sing 18 n n C3 C2 9CR sing 19 n n C1 C17 9CR sing 20 n n C1 C2 9CR sing 21 n n C1 C16 9CR sing 22 n n C2 H1 9CR sing 23 n n C2 H2 9CR sing 24 n n C3 H3 9CR sing 25 n n C3 H4 9CR sing 26 n n C4 H5 9CR sing 27 n n C4 H6 9CR sing 28 n n C7 H7 9CR sing 29 n n C8 H8 9CR sing 30 n n C10 H9 9CR sing 31 n n C11 H10 9CR sing 32 n n C12 H11 9CR sing 33 n n C14 H12 9CR sing 34 n n C16 H13 9CR sing 35 n n C16 H14 9CR sing 36 n n C16 H15 9CR sing 37 n n C17 H16 9CR sing 38 n n C17 H17 9CR sing 39 n n C17 H18 9CR sing 40 n n C18 H19 9CR sing 41 n n C18 H20 9CR sing 42 n n C18 H21 9CR sing 43 n n C19 H22 9CR sing 44 n n C19 H23 9CR sing 45 n n C19 H24 9CR sing 46 n n C20 H25 9CR sing 47 n n C20 H26 9CR sing 48 n n C20 H27 9CR sing 49 n n O2 H28 9CR sing 50 n n # _atom_sites.entry_id 1TYR _atom_sites.fract_transf_matrix[1][1] 0.022831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9CR A 1 131 131 9CR 9CR . D 2 9CR B 1 130 130 9CR 9CR . E 3 HOH A 1 201 201 HOH HOH . E 3 HOH A 2 202 202 HOH HOH . E 3 HOH A 3 203 203 HOH HOH . E 3 HOH A 4 204 204 HOH HOH . E 3 HOH A 5 205 205 HOH HOH . E 3 HOH A 6 206 206 HOH HOH . E 3 HOH A 7 207 207 HOH HOH . E 3 HOH A 8 208 208 HOH HOH . E 3 HOH A 9 209 209 HOH HOH . E 3 HOH A 10 210 210 HOH HOH . E 3 HOH A 11 211 211 HOH HOH . E 3 HOH A 12 212 212 HOH HOH . E 3 HOH A 13 213 213 HOH HOH . E 3 HOH A 14 214 214 HOH HOH . E 3 HOH A 15 215 215 HOH HOH . E 3 HOH A 16 216 216 HOH HOH . E 3 HOH A 17 217 217 HOH HOH . E 3 HOH A 18 218 218 HOH HOH . E 3 HOH A 19 219 219 HOH HOH . E 3 HOH A 20 220 220 HOH HOH . E 3 HOH A 21 221 221 HOH HOH . E 3 HOH A 22 223 223 HOH HOH . E 3 HOH A 23 224 224 HOH HOH . E 3 HOH A 24 225 225 HOH HOH . E 3 HOH A 25 226 226 HOH HOH . E 3 HOH A 26 227 227 HOH HOH . E 3 HOH A 27 228 228 HOH HOH . E 3 HOH A 28 229 229 HOH HOH . E 3 HOH A 29 230 230 HOH HOH . E 3 HOH A 30 231 231 HOH HOH . E 3 HOH A 31 232 232 HOH HOH . E 3 HOH A 32 233 233 HOH HOH . E 3 HOH A 33 234 234 HOH HOH . E 3 HOH A 34 267 267 HOH HOH . E 3 HOH A 35 268 268 HOH HOH . E 3 HOH A 36 271 271 HOH HOH . E 3 HOH A 37 272 272 HOH HOH . E 3 HOH A 38 273 273 HOH HOH . E 3 HOH A 39 276 276 HOH HOH . E 3 HOH A 40 278 278 HOH HOH . E 3 HOH A 41 279 279 HOH HOH . E 3 HOH A 42 280 280 HOH HOH . E 3 HOH A 43 282 282 HOH HOH . E 3 HOH A 44 283 283 HOH HOH . E 3 HOH A 45 284 284 HOH HOH . E 3 HOH A 46 285 285 HOH HOH . E 3 HOH A 47 286 286 HOH HOH . E 3 HOH A 48 289 289 HOH HOH . E 3 HOH A 49 290 290 HOH HOH . E 3 HOH A 50 291 291 HOH HOH . E 3 HOH A 51 292 292 HOH HOH . E 3 HOH A 52 295 295 HOH HOH . E 3 HOH A 53 296 296 HOH HOH . F 3 HOH B 1 200 200 HOH HOH . F 3 HOH B 2 222 222 HOH HOH . F 3 HOH B 3 235 235 HOH HOH . F 3 HOH B 4 236 236 HOH HOH . F 3 HOH B 5 237 237 HOH HOH . F 3 HOH B 6 238 238 HOH HOH . F 3 HOH B 7 239 239 HOH HOH . F 3 HOH B 8 240 240 HOH HOH . F 3 HOH B 9 241 241 HOH HOH . F 3 HOH B 10 242 242 HOH HOH . F 3 HOH B 11 243 243 HOH HOH . F 3 HOH B 12 244 244 HOH HOH . F 3 HOH B 13 245 245 HOH HOH . F 3 HOH B 14 246 246 HOH HOH . F 3 HOH B 15 247 247 HOH HOH . F 3 HOH B 16 248 248 HOH HOH . F 3 HOH B 17 249 249 HOH HOH . F 3 HOH B 18 250 250 HOH HOH . F 3 HOH B 19 251 251 HOH HOH . F 3 HOH B 20 252 252 HOH HOH . F 3 HOH B 21 253 253 HOH HOH . F 3 HOH B 22 254 254 HOH HOH . F 3 HOH B 23 255 255 HOH HOH . F 3 HOH B 24 256 256 HOH HOH . F 3 HOH B 25 257 257 HOH HOH . F 3 HOH B 26 258 258 HOH HOH . F 3 HOH B 27 259 259 HOH HOH . F 3 HOH B 28 260 260 HOH HOH . F 3 HOH B 29 261 261 HOH HOH . F 3 HOH B 30 262 262 HOH HOH . F 3 HOH B 31 263 263 HOH HOH . F 3 HOH B 32 264 264 HOH HOH . F 3 HOH B 33 265 265 HOH HOH . F 3 HOH B 34 266 266 HOH HOH . F 3 HOH B 35 269 269 HOH HOH . F 3 HOH B 36 270 270 HOH HOH . F 3 HOH B 37 274 274 HOH HOH . F 3 HOH B 38 275 275 HOH HOH . F 3 HOH B 39 277 277 HOH HOH . F 3 HOH B 40 281 281 HOH HOH . F 3 HOH B 41 287 287 HOH HOH . F 3 HOH B 42 288 288 HOH HOH . F 3 HOH B 43 293 293 HOH HOH . F 3 HOH B 44 294 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . D 2 21.125 44.867 56.3 1 29.7 ? C1 9CR 130 B 1 HETATM 2 C C2 9CR . . . D 2 21.064 44.852 54.765 1 28.11 ? C2 9CR 130 B 1 HETATM 3 C C3 9CR . . . D 2 21.829 43.82 54.125 1 26.46 ? C3 9CR 130 B 1 HETATM 4 C C4 9CR . . . D 2 21.365 42.423 54.498 1 26.08 ? C4 9CR 130 B 1 HETATM 5 C C5 9CR . . . D 2 21.265 42.262 55.999 1 28.86 ? C5 9CR 130 B 1 HETATM 6 C C6 9CR . . . D 2 21.148 43.355 56.852 1 30.29 ? C6 9CR 130 B 1 HETATM 7 C C7 9CR . . . D 2 20.883 43.237 58.319 1 29.88 ? C7 9CR 130 B 1 HETATM 8 C C8 9CR . . . D 2 21.819 42.893 59.422 1 32.14 ? C8 9CR 130 B 1 HETATM 9 C C9 9CR . . . D 2 21.613 42.717 60.832 1 32.15 ? C9 9CR 130 B 1 HETATM 10 C C10 9CR . . . D 2 22.711 42.364 61.556 1 33.84 ? C10 9CR 130 B 1 HETATM 11 C C11 9CR . . . D 2 22.778 42.089 62.977 1 33.39 ? C11 9CR 130 B 1 HETATM 12 C C12 9CR . . . D 2 23.903 41.613 63.576 1 30.46 ? C12 9CR 130 B 1 HETATM 13 C C13 9CR . . . D 2 25.126 41.259 62.869 1 32.39 ? C13 9CR 130 B 1 HETATM 14 C C14 9CR . . . D 2 26.186 40.793 63.578 1 32.99 ? C14 9CR 130 B 1 HETATM 15 C C15 9CR . . . D 2 26.942 41.653 64.476 1 33.56 ? C15 9CR 130 B 1 HETATM 16 C C16 9CR . . . D 2 19.89 45.648 56.812 1 30.78 ? C16 9CR 130 B 1 HETATM 17 C C17 9CR . . . D 2 22.392 45.607 56.744 1 31.83 ? C17 9CR 130 B 1 HETATM 18 C C18 9CR . . . D 2 21.433 40.795 56.403 1 23.36 ? C18 9CR 130 B 1 HETATM 19 C C19 9CR . . . D 2 20.177 42.865 61.376 1 33.51 ? C19 9CR 130 B 1 HETATM 20 C C20 9CR . . . D 2 25.083 41.216 61.295 1 29.77 ? C20 9CR 130 B 1 HETATM 21 O O1 9CR . . . D 2 26.616 41.832 65.848 1 34.65 ? O1 9CR 130 B 1 HETATM 22 O O2 9CR . . . D 2 28.026 42.52 64.528 1 45.91 ? O2 9CR 130 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 520 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #