data_1TZ3 # _model_server_result.job_id wzeNfm1XxaN8dSdNqEqUjQ _model_server_result.datetime_utc '2024-11-28 04:57:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1tz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 1TZ3 # _exptl.entry_id 1TZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-AMINOIMIDAZOLE RIBONUCLEOSIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1TZ3 _cell.length_a 135.851 _cell.length_b 54.098 _cell.length_c 89.796 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 167 A ARG 147 1_555 A N MSE 168 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 168 A MSE 148 1_555 A N ARG 169 A ARG 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LYS 184 A LYS 164 1_555 A N MSE 185 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 185 A MSE 165 1_555 A N TRP 186 A TRP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ALA 305 A ALA 285 1_555 A N MSE 306 A MSE 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 306 A MSE 286 1_555 A N ALA 307 A ALA 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C ALA 313 A ALA 293 1_555 A N MSE 314 A MSE 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 314 A MSE 294 1_555 A N THR 315 A THR 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale9 B C ARG 167 B ARG 147 1_555 B N MSE 168 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MSE 168 B MSE 148 1_555 B N ARG 169 B ARG 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 B C LYS 184 B LYS 164 1_555 B N MSE 185 B MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C MSE 185 B MSE 165 1_555 B N TRP 186 B TRP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C ALA 305 B ALA 285 1_555 B N MSE 306 B MSE 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C MSE 306 B MSE 286 1_555 B N ALA 307 B ALA 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 B C ALA 313 B ALA 293 1_555 B N MSE 314 B MSE 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C MSE 314 B MSE 294 1_555 B N THR 315 B THR 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A O ALA 200 A ALA 180 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc2 A O ALA 201 A ALA 181 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc3 A O ALA 203 A ALA 183 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc4 A O GLY 233 A GLY 213 1_555 D K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc5 A OD2 ASP 266 A ASP 246 1_555 C K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc6 A O ASP 266 A ASP 246 1_555 C K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc7 A O THR 268 A THR 248 1_555 C K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc8 A O ALA 307 A ALA 287 1_555 C K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc9 A O ALA 310 A ALA 290 1_555 C K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.609 ? metalc ? metalc10 A O GLY 312 A GLY 292 1_555 C K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc11 A N GLY 312 A GLY 292 1_555 C K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.527 ? metalc ? metalc12 D K K . A K 405 1_555 H O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.579 ? metalc ? metalc13 B O ALA 200 B ALA 180 1_555 F K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc14 B O ALA 201 B ALA 181 1_555 F K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc15 B O ALA 203 B ALA 183 1_555 F K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc16 B O GLY 233 B GLY 213 1_555 F K K . B K 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc17 B O ASP 266 B ASP 246 1_555 G K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc18 B OD2 ASP 266 B ASP 246 1_555 G K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc19 B O THR 268 B THR 248 1_555 G K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc20 B N THR 268 B THR 248 1_555 G K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.305 ? metalc ? metalc21 B O ALA 307 B ALA 287 1_555 G K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc22 B O ALA 310 B ALA 290 1_555 G K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc23 B O GLY 312 B GLY 292 1_555 G K K . B K 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.614 ? metalc ? metalc24 F K K . B K 406 1_555 I O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc25 F K K . B K 406 1_555 I O HOH . B HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc26 F K K . B K 406 1_555 I O HOH . B HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.517 ? # _chem_comp.formula 'C8 H13 N3 O4' _chem_comp.formula_weight 215.207 _chem_comp.id AIS _chem_comp.mon_nstd_flag . _chem_comp.name '5-AMINOIMIDAZOLE RIBONUCLEOSIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' AIS sing 1 n n O2' H1 AIS sing 2 n n C2' C3' AIS sing 3 n n C2' C1' AIS sing 4 n n C2' H2' AIS sing 5 n n C3' O3' AIS sing 6 n n C3' C4' AIS sing 7 n n C3' H3' AIS sing 8 n n O3' H3 AIS sing 9 n n C4' C5' AIS sing 10 n n C4' O4' AIS sing 11 n n C4' H4' AIS sing 12 n n C5' O5' AIS sing 13 n n C5' "H5'1" AIS sing 14 n n C5' "H5'2" AIS sing 15 n n O5' H5' AIS sing 16 n n O4' C1' AIS sing 17 n n C1' N1 AIS sing 18 n n C1' H1' AIS sing 19 n n N1 C2 AIS sing 20 n y N1 C5 AIS sing 21 n y C2 N3 AIS doub 22 n y C2 H2 AIS sing 23 n n N3 C4 AIS sing 24 n y C4 C5 AIS doub 25 n y C4 H4 AIS sing 26 n n C5 N6 AIS sing 27 n n N6 HN61 AIS sing 28 n n N6 HN62 AIS sing 29 n n # _atom_sites.entry_id 1TZ3 _atom_sites.fract_transf_matrix[1][1] 0.007361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 404 404 K K1 . D 2 K A 1 405 405 K K1 . E 3 AIS A 1 402 402 AIS AIS . F 2 K B 1 406 404 K K1 . G 2 K B 1 407 405 K K1 . H 4 HOH A 1 601 601 HOH HOH . H 4 HOH A 2 602 602 HOH HOH . H 4 HOH A 3 607 607 HOH HOH . H 4 HOH A 4 608 608 HOH HOH . H 4 HOH A 5 610 610 HOH HOH . H 4 HOH A 6 615 615 HOH HOH . H 4 HOH A 7 616 616 HOH HOH . H 4 HOH A 8 617 617 HOH HOH . H 4 HOH A 9 618 618 HOH HOH . H 4 HOH A 10 619 619 HOH HOH . H 4 HOH A 11 625 625 HOH HOH . H 4 HOH A 12 627 627 HOH HOH . H 4 HOH A 13 628 628 HOH HOH . H 4 HOH A 14 629 629 HOH HOH . H 4 HOH A 15 630 630 HOH HOH . H 4 HOH A 16 632 632 HOH HOH . H 4 HOH A 17 634 634 HOH HOH . H 4 HOH A 18 636 636 HOH HOH . H 4 HOH A 19 640 640 HOH HOH . H 4 HOH A 20 642 642 HOH HOH . I 4 HOH B 1 603 603 HOH HOH . I 4 HOH B 2 604 604 HOH HOH . I 4 HOH B 3 606 606 HOH HOH . I 4 HOH B 4 609 609 HOH HOH . I 4 HOH B 5 611 611 HOH HOH . I 4 HOH B 6 612 612 HOH HOH . I 4 HOH B 7 613 613 HOH HOH . I 4 HOH B 8 614 614 HOH HOH . I 4 HOH B 9 620 620 HOH HOH . I 4 HOH B 10 621 621 HOH HOH . I 4 HOH B 11 622 622 HOH HOH . I 4 HOH B 12 623 623 HOH HOH . I 4 HOH B 13 624 624 HOH HOH . I 4 HOH B 14 626 626 HOH HOH . I 4 HOH B 15 631 631 HOH HOH . I 4 HOH B 16 633 633 HOH HOH . I 4 HOH B 17 635 635 HOH HOH . I 4 HOH B 18 637 637 HOH HOH . I 4 HOH B 19 638 638 HOH HOH . I 4 HOH B 20 639 639 HOH HOH . I 4 HOH B 21 641 641 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2' AIS . . . E 3 19.492 -16.513 -12.392 1 75.3 ? O2' AIS 402 A 1 HETATM 2 C C2' AIS . . . E 3 19.959 -15.476 -11.524 1 75.3 ? C2' AIS 402 A 1 HETATM 3 C C3' AIS . . . E 3 21.027 -15.985 -10.555 1 75.3 ? C3' AIS 402 A 1 HETATM 4 O O3' AIS . . . E 3 21.03 -17.414 -10.569 1 75.3 ? O3' AIS 402 A 1 HETATM 5 C C4' AIS . . . E 3 20.545 -15.472 -9.196 1 75.3 ? C4' AIS 402 A 1 HETATM 6 C C5' AIS . . . E 3 21.726 -14.944 -8.379 1 75.3 ? C5' AIS 402 A 1 HETATM 7 O O5' AIS . . . E 3 21.268 -14.481 -7.105 1 75.3 ? O5' AIS 402 A 1 HETATM 8 O O4' AIS . . . E 3 19.663 -14.391 -9.534 1 75.3 ? O4' AIS 402 A 1 HETATM 9 C C1' AIS . . . E 3 18.87 -14.974 -10.577 1 75.3 ? C1' AIS 402 A 1 HETATM 10 N N1 AIS . . . E 3 17.921 -14.028 -11.211 1 75.3 ? N1 AIS 402 A 1 HETATM 11 C C2 AIS . . . E 3 18.088 -12.715 -11.353 1 75.3 ? C2 AIS 402 A 1 HETATM 12 N N3 AIS . . . E 3 17.008 -12.212 -11.946 1 75.3 ? N3 AIS 402 A 1 HETATM 13 C C4 AIS . . . E 3 16.154 -13.205 -12.183 1 75.3 ? C4 AIS 402 A 1 HETATM 14 C C5 AIS . . . E 3 16.728 -14.313 -11.727 1 75.3 ? C5 AIS 402 A 1 HETATM 15 N N6 AIS . . . E 3 16.179 -15.524 -11.777 1 75.3 ? N6 AIS 402 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #